2021-05-17T21:32:07.4800213Z ##[section]Starting: Request a runner to run this job 2021-05-17T21:32:07.9318490Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-17T21:32:07.9976372Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-17T21:32:08.0756323Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-17T21:32:08.1600652Z ##[section]Finishing: Request a runner to run this job 2021-05-17T21:32:15.0000327Z Current runner version: '2.278.0' 2021-05-17T21:32:15.0024531Z ##[group]Operating System 2021-05-17T21:32:15.0025378Z Ubuntu 2021-05-17T21:32:15.0025833Z 20.04.2 2021-05-17T21:32:15.0026490Z LTS 2021-05-17T21:32:15.0026913Z ##[endgroup] 2021-05-17T21:32:15.0027492Z ##[group]Virtual Environment 2021-05-17T21:32:15.0028079Z Environment: ubuntu-20.04 2021-05-17T21:32:15.0028654Z Version: 20210510.0 2021-05-17T21:32:15.0029643Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210510.0/images/linux/Ubuntu2004-README.md 2021-05-17T21:32:15.0030955Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210510.0 2021-05-17T21:32:15.0031812Z ##[endgroup] 2021-05-17T21:32:15.0033588Z ##[group]GITHUB_TOKEN Permissions 2021-05-17T21:32:15.0034800Z Actions: write 2021-05-17T21:32:15.0035280Z Checks: write 2021-05-17T21:32:15.0035788Z Contents: write 2021-05-17T21:32:15.0036279Z Deployments: write 2021-05-17T21:32:15.0036892Z Issues: write 2021-05-17T21:32:15.0037484Z Metadata: read 2021-05-17T21:32:15.0037953Z Packages: write 2021-05-17T21:32:15.0038497Z PullRequests: write 2021-05-17T21:32:15.0039074Z RepositoryProjects: write 2021-05-17T21:32:15.0039709Z SecurityEvents: write 2021-05-17T21:32:15.0040297Z Statuses: write 2021-05-17T21:32:15.0040864Z ##[endgroup] 2021-05-17T21:32:15.0043648Z Prepare workflow directory 2021-05-17T21:32:15.0985070Z Prepare all required actions 2021-05-17T21:32:15.0995717Z Getting action download info 2021-05-17T21:32:15.5148373Z Download action repository 'actions/checkout@v2' 2021-05-17T21:32:17.1933027Z Download action repository 'r-lib/actions@master' 2021-05-17T21:32:17.6723543Z Download action repository 'adigherman/actions@master' 2021-05-17T21:32:18.7194164Z Download action repository 'msys2/setup-msys2@v2' 2021-05-17T21:32:18.8861666Z Download action repository 'actions/cache@v1' 2021-05-17T21:32:19.0428224Z Download action repository 'actions/upload-artifact@master' 2021-05-17T21:32:19.2014934Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-17T21:32:19.5159300Z ##[group]Run actions/checkout@v2 2021-05-17T21:32:19.5159888Z with: 2021-05-17T21:32:19.5160315Z repository: neuroconductor/aal 2021-05-17T21:32:19.5161226Z token: *** 2021-05-17T21:32:19.5161596Z ssh-strict: true 2021-05-17T21:32:19.5162072Z persist-credentials: true 2021-05-17T21:32:19.5162534Z clean: true 2021-05-17T21:32:19.5162895Z fetch-depth: 1 2021-05-17T21:32:19.5163260Z lfs: false 2021-05-17T21:32:19.5163631Z submodules: false 2021-05-17T21:32:19.5163976Z env: 2021-05-17T21:32:19.5164397Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:32:19.5164837Z TIC_DEPLOY_KEY: 2021-05-17T21:32:19.5165617Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:32:19.5166748Z GITHUB_PAT: *** 2021-05-17T21:32:19.5167520Z COVERALLS_TOKEN: *** 2021-05-17T21:32:19.5167995Z continue-on-error: true 2021-05-17T21:32:19.5168454Z VDIFFR_RUN_TESTS: 2021-05-17T21:32:19.5168820Z ##[endgroup] 2021-05-17T21:32:20.7042868Z Syncing repository: neuroconductor/aal 2021-05-17T21:32:20.7043641Z ##[group]Getting Git version info 2021-05-17T21:32:20.7044743Z Working directory is '/home/runner/work/aal/aal' 2021-05-17T21:32:20.7045315Z [command]/usr/bin/git version 2021-05-17T21:32:20.7045714Z git version 2.31.1 2021-05-17T21:32:20.7046505Z ##[endgroup] 2021-05-17T21:32:20.7047165Z Deleting the contents of '/home/runner/work/aal/aal' 2021-05-17T21:32:20.7048195Z ##[group]Initializing the repository 2021-05-17T21:32:20.7048770Z [command]/usr/bin/git init /home/runner/work/aal/aal 2021-05-17T21:32:20.7049637Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-17T21:32:20.7050398Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-17T21:32:20.7051171Z hint: of your new repositories, which will suppress this warning, call: 2021-05-17T21:32:20.7051722Z hint: 2021-05-17T21:32:20.7052377Z hint: git config --global init.defaultBranch 2021-05-17T21:32:20.7053162Z hint: 2021-05-17T21:32:20.7053855Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-17T21:32:20.7054782Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-17T21:32:20.7055358Z hint: 2021-05-17T21:32:20.7055841Z hint: git branch -m 2021-05-17T21:32:20.7056440Z Initialized empty Git repository in /home/runner/work/aal/aal/.git/ 2021-05-17T21:32:20.7057294Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/aal 2021-05-17T21:32:20.7057947Z ##[endgroup] 2021-05-17T21:32:20.7058464Z ##[group]Disabling automatic garbage collection 2021-05-17T21:32:20.7059201Z [command]/usr/bin/git config --local gc.auto 0 2021-05-17T21:32:20.7059670Z ##[endgroup] 2021-05-17T21:32:20.7060979Z ##[group]Setting up auth 2021-05-17T21:32:20.7061805Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-17T21:32:20.7063226Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-17T21:32:20.7064669Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-17T21:32:20.7066680Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-17T21:32:20.7068444Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-17T21:32:20.7069226Z ##[endgroup] 2021-05-17T21:32:20.7069688Z ##[group]Fetching the repository 2021-05-17T21:32:20.7071267Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +d69483bfc9a3301afc4bdfa6987639370f0e597b:refs/tags/0.1.1.s 2021-05-17T21:32:20.7072460Z remote: Enumerating objects: 69, done. 2021-05-17T21:32:20.7073151Z remote: Counting objects: 1% (1/69) 2021-05-17T21:32:20.7073650Z remote: Counting objects: 2% (2/69) 2021-05-17T21:32:20.7074156Z remote: Counting objects: 4% (3/69) 2021-05-17T21:32:20.7074653Z remote: Counting objects: 5% (4/69) 2021-05-17T21:32:20.7075136Z remote: Counting objects: 7% (5/69) 2021-05-17T21:32:20.7075632Z remote: Counting objects: 8% (6/69) 2021-05-17T21:32:20.7076116Z remote: Counting objects: 10% (7/69) 2021-05-17T21:32:20.7076621Z remote: Counting objects: 11% (8/69) 2021-05-17T21:32:20.7077120Z remote: Counting objects: 13% (9/69) 2021-05-17T21:32:20.7077603Z remote: Counting objects: 14% (10/69) 2021-05-17T21:32:20.7078104Z remote: Counting objects: 15% (11/69) 2021-05-17T21:32:20.7078602Z remote: Counting objects: 17% (12/69) 2021-05-17T21:32:20.7079090Z remote: Counting objects: 18% (13/69) 2021-05-17T21:32:20.7079585Z remote: Counting objects: 20% (14/69) 2021-05-17T21:32:20.7080075Z remote: Counting objects: 21% (15/69) 2021-05-17T21:32:20.7080565Z remote: Counting objects: 23% (16/69) 2021-05-17T21:32:20.7081068Z remote: Counting objects: 24% (17/69) 2021-05-17T21:32:20.7081550Z remote: Counting objects: 26% (18/69) 2021-05-17T21:32:20.7082040Z remote: Counting objects: 27% (19/69) 2021-05-17T21:32:20.7082522Z remote: Counting objects: 28% (20/69) 2021-05-17T21:32:20.7083010Z remote: Counting objects: 30% (21/69) 2021-05-17T21:32:20.7083504Z remote: Counting objects: 31% (22/69) 2021-05-17T21:32:20.7083981Z remote: Counting objects: 33% (23/69) 2021-05-17T21:32:20.7084474Z remote: Counting objects: 34% (24/69) 2021-05-17T21:32:20.7084963Z remote: Counting objects: 36% (25/69) 2021-05-17T21:32:20.7085442Z remote: Counting objects: 37% (26/69) 2021-05-17T21:32:20.7085934Z remote: Counting objects: 39% (27/69) 2021-05-17T21:32:20.7086516Z remote: Counting objects: 40% (28/69) 2021-05-17T21:32:20.7087006Z remote: Counting objects: 42% (29/69) 2021-05-17T21:32:20.7087500Z remote: Counting objects: 43% (30/69) 2021-05-17T21:32:20.7087975Z remote: Counting objects: 44% (31/69) 2021-05-17T21:32:20.7088469Z remote: Counting objects: 46% (32/69) 2021-05-17T21:32:20.7088949Z remote: Counting objects: 47% (33/69) 2021-05-17T21:32:20.7089437Z remote: Counting objects: 49% (34/69) 2021-05-17T21:32:20.7089926Z remote: Counting objects: 50% (35/69) 2021-05-17T21:32:20.7090407Z remote: Counting objects: 52% (36/69) 2021-05-17T21:32:20.7090898Z remote: Counting objects: 53% (37/69) 2021-05-17T21:32:20.7091390Z remote: Counting objects: 55% (38/69) 2021-05-17T21:32:20.7091873Z remote: Counting objects: 56% (39/69) 2021-05-17T21:32:20.7092363Z remote: Counting objects: 57% (40/69) 2021-05-17T21:32:20.7092846Z remote: Counting objects: 59% (41/69) 2021-05-17T21:32:20.7093346Z remote: Counting objects: 60% (42/69) 2021-05-17T21:32:20.7093835Z remote: Counting objects: 62% (43/69) 2021-05-17T21:32:20.7094314Z remote: Counting objects: 63% (44/69) 2021-05-17T21:32:20.7094801Z remote: Counting objects: 65% (45/69) 2021-05-17T21:32:20.7095279Z remote: Counting objects: 66% (46/69) 2021-05-17T21:32:20.7095773Z remote: Counting objects: 68% (47/69) 2021-05-17T21:32:20.7096263Z remote: Counting objects: 69% (48/69) 2021-05-17T21:32:20.7096744Z remote: Counting objects: 71% (49/69) 2021-05-17T21:32:20.7097234Z remote: Counting objects: 72% (50/69) 2021-05-17T21:32:20.7097712Z remote: Counting objects: 73% (51/69) 2021-05-17T21:32:20.7098208Z remote: Counting objects: 75% (52/69) 2021-05-17T21:32:20.7098699Z remote: Counting objects: 76% (53/69) 2021-05-17T21:32:20.7099175Z remote: Counting objects: 78% (54/69) 2021-05-17T21:32:20.7099715Z remote: Counting objects: 79% (55/69) 2021-05-17T21:32:20.7100211Z remote: Counting objects: 81% (56/69) 2021-05-17T21:32:20.7100699Z remote: Counting objects: 82% (57/69) 2021-05-17T21:32:20.7101196Z remote: Counting objects: 84% (58/69) 2021-05-17T21:32:20.7101676Z remote: Counting objects: 85% (59/69) 2021-05-17T21:32:20.7102167Z remote: Counting objects: 86% (60/69) 2021-05-17T21:32:20.7102661Z remote: Counting objects: 88% (61/69) 2021-05-17T21:32:20.7103144Z remote: Counting objects: 89% (62/69) 2021-05-17T21:32:20.7103646Z remote: Counting objects: 91% (63/69) 2021-05-17T21:32:20.7104135Z remote: Counting objects: 92% (64/69) 2021-05-17T21:32:20.7104614Z remote: Counting objects: 94% (65/69) 2021-05-17T21:32:20.7105109Z remote: Counting objects: 95% (66/69) 2021-05-17T21:32:20.7105604Z remote: Counting objects: 97% (67/69) 2021-05-17T21:32:20.7106323Z remote: Counting objects: 98% (68/69) 2021-05-17T21:32:20.7106833Z remote: Counting objects: 100% (69/69) 2021-05-17T21:32:20.7107337Z remote: Counting objects: 100% (69/69), done. 2021-05-17T21:32:20.7107879Z remote: Compressing objects: 1% (1/60) 2021-05-17T21:32:20.7108425Z remote: Compressing objects: 3% (2/60) 2021-05-17T21:32:20.7108953Z remote: Compressing objects: 5% (3/60) 2021-05-17T21:32:20.7109489Z remote: Compressing objects: 6% (4/60) 2021-05-17T21:32:20.7110030Z remote: Compressing objects: 8% (5/60) 2021-05-17T21:32:20.7110560Z remote: Compressing objects: 10% (6/60) 2021-05-17T21:32:20.7111101Z remote: Compressing objects: 11% (7/60) 2021-05-17T21:32:20.7111628Z remote: Compressing objects: 13% (8/60) 2021-05-17T21:32:20.7112163Z remote: Compressing objects: 15% (9/60) 2021-05-17T21:32:20.7112707Z remote: Compressing objects: 16% (10/60) 2021-05-17T21:32:20.7113240Z remote: Compressing objects: 18% (11/60) 2021-05-17T21:32:20.7113869Z remote: Compressing objects: 20% (12/60) 2021-05-17T21:32:20.7114397Z remote: Compressing objects: 21% (13/60) 2021-05-17T21:32:20.7114934Z remote: Compressing objects: 23% (14/60) 2021-05-17T21:32:20.7115468Z remote: Compressing objects: 25% (15/60) 2021-05-17T21:32:20.7115991Z remote: Compressing objects: 26% (16/60) 2021-05-17T21:32:20.7116533Z remote: Compressing objects: 28% (17/60) 2021-05-17T21:32:20.7117069Z remote: Compressing objects: 30% (18/60) 2021-05-17T21:32:20.7117593Z remote: Compressing objects: 31% (19/60) 2021-05-17T21:32:20.7118131Z remote: Compressing objects: 33% (20/60) 2021-05-17T21:32:20.7118653Z remote: Compressing objects: 35% (21/60) 2021-05-17T21:32:20.7119192Z remote: Compressing objects: 36% (22/60) 2021-05-17T21:32:20.7119728Z remote: Compressing objects: 38% (23/60) 2021-05-17T21:32:20.7120251Z remote: Compressing objects: 40% (24/60) 2021-05-17T21:32:20.7120792Z remote: Compressing objects: 41% (25/60) 2021-05-17T21:32:20.7121314Z remote: Compressing objects: 43% (26/60) 2021-05-17T21:32:20.7121854Z remote: Compressing objects: 45% (27/60) 2021-05-17T21:32:20.7122389Z remote: Compressing objects: 46% (28/60) 2021-05-17T21:32:20.7122914Z remote: Compressing objects: 48% (29/60) 2021-05-17T21:32:20.7123449Z remote: Compressing objects: 50% (30/60) 2021-05-17T21:32:20.7123985Z remote: Compressing objects: 51% (31/60) 2021-05-17T21:32:20.7124507Z remote: Compressing objects: 53% (32/60) 2021-05-17T21:32:20.7125044Z remote: Compressing objects: 55% (33/60) 2021-05-17T21:32:20.7125566Z remote: Compressing objects: 56% (34/60) 2021-05-17T21:32:20.7126099Z remote: Compressing objects: 58% (35/60) 2021-05-17T21:32:20.7126637Z remote: Compressing objects: 60% (36/60) 2021-05-17T21:32:20.7127160Z remote: Compressing objects: 61% (37/60) 2021-05-17T21:32:20.7127754Z remote: Compressing objects: 63% (38/60) 2021-05-17T21:32:20.7128294Z remote: Compressing objects: 65% (39/60) 2021-05-17T21:32:20.7128815Z remote: Compressing objects: 66% (40/60) 2021-05-17T21:32:20.7129350Z remote: Compressing objects: 68% (41/60) 2021-05-17T21:32:20.7129873Z remote: Compressing objects: 70% (42/60) 2021-05-17T21:32:20.7130407Z remote: Compressing objects: 71% (43/60) 2021-05-17T21:32:20.7130941Z remote: Compressing objects: 73% (44/60) 2021-05-17T21:32:20.7131463Z remote: Compressing objects: 75% (45/60) 2021-05-17T21:32:20.7132001Z remote: Compressing objects: 76% (46/60) 2021-05-17T21:32:20.7133007Z remote: Compressing objects: 78% (47/60) 2021-05-17T21:32:20.7133545Z remote: Compressing objects: 80% (48/60) 2021-05-17T21:32:20.7134089Z remote: Compressing objects: 81% (49/60) 2021-05-17T21:32:20.7134618Z remote: Compressing objects: 83% (50/60) 2021-05-17T21:32:20.7135165Z remote: Compressing objects: 85% (51/60) 2021-05-17T21:32:20.7135711Z remote: Compressing objects: 86% (52/60) 2021-05-17T21:32:20.7136235Z remote: Compressing objects: 88% (53/60) 2021-05-17T21:32:20.7136771Z remote: Compressing objects: 90% (54/60) 2021-05-17T21:32:20.7137296Z remote: Compressing objects: 91% (55/60) 2021-05-17T21:32:20.7137844Z remote: Compressing objects: 93% (56/60) 2021-05-17T21:32:20.7138381Z remote: Compressing objects: 95% (57/60) 2021-05-17T21:32:20.7138906Z remote: Compressing objects: 96% (58/60) 2021-05-17T21:32:20.7139444Z remote: Compressing objects: 98% (59/60) 2021-05-17T21:32:20.7139972Z remote: Compressing objects: 100% (60/60) 2021-05-17T21:32:20.7140541Z remote: Compressing objects: 100% (60/60), done. 2021-05-17T21:32:20.7141498Z remote: Total 69 (delta 5), reused 66 (delta 5), pack-reused 0 2021-05-17T21:32:20.7142282Z From https://github.com/neuroconductor/aal 2021-05-17T21:32:20.7143491Z * [new ref] d69483bfc9a3301afc4bdfa6987639370f0e597b -> 0.1.1.s 2021-05-17T21:32:20.7144160Z ##[endgroup] 2021-05-17T21:32:20.7144764Z ##[group]Determining the checkout info 2021-05-17T21:32:20.7145234Z ##[endgroup] 2021-05-17T21:32:20.7145635Z ##[group]Checking out the ref 2021-05-17T21:32:20.7146544Z [command]/usr/bin/git checkout --progress --force refs/tags/0.1.1.s 2021-05-17T21:32:20.7147278Z Note: switching to 'refs/tags/0.1.1.s'. 2021-05-17T21:32:20.7147591Z 2021-05-17T21:32:20.7148274Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-17T21:32:20.7149032Z changes and commit them, and you can discard any commits you make in this 2021-05-17T21:32:20.7149752Z state without impacting any branches by switching back to a branch. 2021-05-17T21:32:20.7150179Z 2021-05-17T21:32:20.7150679Z If you want to create a new branch to retain commits you create, you may 2021-05-17T21:32:20.7151536Z do so (now or later) by using -c with the switch command. Example: 2021-05-17T21:32:20.7151920Z 2021-05-17T21:32:20.7152459Z git switch -c 2021-05-17T21:32:20.7152793Z 2021-05-17T21:32:20.7153150Z Or undo this operation with: 2021-05-17T21:32:20.7153449Z 2021-05-17T21:32:20.7153877Z git switch - 2021-05-17T21:32:20.7154119Z 2021-05-17T21:32:20.7154693Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-17T21:32:20.7155201Z 2021-05-17T21:32:20.7155590Z HEAD is now at d69483b Version id 122 stable 2021-05-17T21:32:20.7156029Z ##[endgroup] 2021-05-17T21:32:20.7156609Z [command]/usr/bin/git log -1 --format='%H' 2021-05-17T21:32:20.7157471Z 'd69483bfc9a3301afc4bdfa6987639370f0e597b' 2021-05-17T21:32:20.7236677Z ##[group]Run r-lib/actions/setup-r@master 2021-05-17T21:32:20.7237136Z with: 2021-05-17T21:32:20.7237478Z r-version: devel 2021-05-17T21:32:20.7237842Z Ncpus: 1 2021-05-17T21:32:20.7238238Z crayon.enabled: NULL 2021-05-17T21:32:20.7238748Z remove-openmp-macos: true 2021-05-17T21:32:20.7239287Z http-user-agent: default 2021-05-17T21:32:20.7239720Z install-r: true 2021-05-17T21:32:20.7240270Z windows-path-include-mingw: true 2021-05-17T21:32:20.7240784Z env: 2021-05-17T21:32:20.7241182Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:32:20.7241628Z TIC_DEPLOY_KEY: 2021-05-17T21:32:20.7242390Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:32:20.7243614Z GITHUB_PAT: *** 2021-05-17T21:32:20.7244386Z COVERALLS_TOKEN: *** 2021-05-17T21:32:20.7244853Z continue-on-error: true 2021-05-17T21:32:20.7245302Z VDIFFR_RUN_TESTS: 2021-05-17T21:32:20.7245673Z ##[endgroup] 2021-05-17T21:32:21.4857620Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-17T21:32:23.4269180Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-17T21:32:23.4303424Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-17T21:32:23.4308305Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-17T21:32:23.4930164Z Hit:4 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-17T21:32:23.4995730Z Get:5 http://security.ubuntu.com/ubuntu focal-security InRelease [109 kB] 2021-05-17T21:32:23.5442371Z Hit:6 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-17T21:32:23.6380803Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [983 kB] 2021-05-17T21:32:23.6567484Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [223 kB] 2021-05-17T21:32:23.6602073Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.3 kB] 2021-05-17T21:32:23.6604149Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-17T21:32:23.6630004Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [33.3 kB] 2021-05-17T21:32:23.6639403Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [775 kB] 2021-05-17T21:32:23.6697560Z Get:13 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-17T21:32:23.6724571Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [167 kB] 2021-05-17T21:32:23.6776690Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.5 kB] 2021-05-17T21:32:23.7011328Z Get:16 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-17T21:32:23.9464568Z Hit:17 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-17T21:32:24.0324573Z Get:18 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [656 kB] 2021-05-17T21:32:24.0978701Z Get:19 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [132 kB] 2021-05-17T21:32:24.0996738Z Get:20 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7508 B] 2021-05-17T21:32:24.1153207Z Get:21 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [203 kB] 2021-05-17T21:32:24.1155259Z Get:22 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [29.7 kB] 2021-05-17T21:32:24.1188559Z Get:23 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [566 kB] 2021-05-17T21:32:24.1200589Z Get:24 http://security.ubuntu.com/ubuntu focal-security/universe Translation-en [85.2 kB] 2021-05-17T21:32:24.1214660Z Get:25 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.1 kB] 2021-05-17T21:32:24.2733735Z Get:26 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.2 kB] 2021-05-17T21:32:30.2330113Z Fetched 4554 kB in 1s (4519 kB/s) 2021-05-17T21:32:30.9816372Z Reading package lists... 2021-05-17T21:32:31.0069337Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-17T21:32:32.7708138Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-17T21:32:32.8332905Z Reading package lists... 2021-05-17T21:32:32.9899615Z Building dependency tree... 2021-05-17T21:32:32.9914942Z Reading state information... 2021-05-17T21:32:33.1383672Z The following additional packages will be installed: 2021-05-17T21:32:33.1385291Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-17T21:32:33.1386940Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-17T21:32:33.1392900Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-17T21:32:33.1394703Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-17T21:32:33.1396356Z libcommon-sense-perl libconst-fast-perl libcontextual-return-perl 2021-05-17T21:32:33.1397767Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-17T21:32:33.1399278Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-17T21:32:33.1400988Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-17T21:32:33.1402506Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-17T21:32:33.1403917Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-17T21:32:33.1405418Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-17T21:32:33.1406904Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-17T21:32:33.1408336Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-17T21:32:33.1409752Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-17T21:32:33.1410963Z libipc-run-perl libjson-maybexs-perl libjson-perl libjson-xs-perl 2021-05-17T21:32:33.1412195Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-17T21:32:33.1413391Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-17T21:32:33.1414772Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-17T21:32:33.1416596Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-17T21:32:33.1417991Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-17T21:32:33.1419253Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-17T21:32:33.1420549Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-17T21:32:33.1422045Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-17T21:32:33.1423577Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-17T21:32:33.1424936Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-17T21:32:33.1426407Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-17T21:32:33.1427837Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-17T21:32:33.1429305Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-17T21:32:33.1430766Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-17T21:32:33.1432199Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-17T21:32:33.1433651Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-17T21:32:33.1435211Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-17T21:32:33.1436720Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-17T21:32:33.1438146Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-17T21:32:33.1439523Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-17T21:32:33.1441049Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-17T21:32:33.1442393Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-17T21:32:33.1443446Z python3-magic python3-unidiff python3-xdg t1utils wdiff 2021-05-17T21:32:33.1444218Z Suggested packages: 2021-05-17T21:32:33.1445089Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-17T21:32:33.1446209Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-17T21:32:33.1447458Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-17T21:32:33.1448756Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-17T21:32:33.1449959Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-17T21:32:33.1451151Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-17T21:32:33.1452288Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-17T21:32:33.1453627Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-17T21:32:33.1455192Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-17T21:32:33.1456483Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-17T21:32:33.5942796Z The following NEW packages will be installed: 2021-05-17T21:32:33.5948658Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-17T21:32:33.5955246Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-17T21:32:33.5957223Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-17T21:32:33.5958936Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-17T21:32:33.5960295Z libclone-perl libcommon-sense-perl libconst-fast-perl 2021-05-17T21:32:33.5961552Z libcontextual-return-perl libcpanel-json-xs-perl libcroco3 2021-05-17T21:32:33.5962956Z libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-17T21:32:33.5964378Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-17T21:32:33.5965880Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-17T21:32:33.5967330Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-17T21:32:33.5974405Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-17T21:32:33.5978657Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-17T21:32:33.5980688Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-17T21:32:33.5982368Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-17T21:32:33.5983821Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-17T21:32:33.5985329Z libjson-perl libjson-xs-perl liblinux-epoll-perl liblist-compare-perl 2021-05-17T21:32:33.5988198Z liblist-moreutils-perl liblist-someutils-perl liblist-someutils-xs-perl 2021-05-17T21:32:33.5989874Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-17T21:32:33.5991420Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-17T21:32:33.5992790Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-17T21:32:33.5994057Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-17T21:32:33.5995283Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-17T21:32:33.5996728Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-17T21:32:33.5998251Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-17T21:32:33.5999610Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-17T21:32:33.6000978Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-17T21:32:33.6002369Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-17T21:32:33.6003792Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-17T21:32:33.6005411Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-17T21:32:33.6006845Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-17T21:32:33.6008322Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-17T21:32:33.6009866Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-17T21:32:33.6011348Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-17T21:32:33.6012737Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-17T21:32:33.6014050Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-17T21:32:33.6015496Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-17T21:32:33.6016813Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-17T21:32:33.6017850Z python3-magic python3-unidiff python3-xdg qpdf t1utils wdiff 2021-05-17T21:32:33.6172073Z 0 upgraded, 130 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:32:34.2015120Z Need to get 8648 kB of archives. 2021-05-17T21:32:34.2034176Z After this operation, 32.3 MB of additional disk space will be used. 2021-05-17T21:32:34.2036954Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-17T21:32:34.2038987Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-17T21:32:34.2040808Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-17T21:32:34.2042449Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-17T21:32:34.2047606Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-17T21:32:34.2049511Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-17T21:32:34.2051548Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-17T21:32:34.2053475Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-17T21:32:34.2055696Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-17T21:32:34.2058249Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-17T21:32:34.2060289Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-17T21:32:34.2062277Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-17T21:32:34.2064031Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-17T21:32:34.2065885Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-17T21:32:34.2067978Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-17T21:32:34.2069641Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-17T21:32:34.2071306Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-17T21:32:34.2072975Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-17T21:32:34.2074364Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-17T21:32:34.2076051Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-17T21:32:34.2077715Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-17T21:32:34.2079278Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-17T21:32:34.2080991Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-17T21:32:34.2082670Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-17T21:32:34.2084270Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-17T21:32:34.2085972Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-17T21:32:34.2087678Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-17T21:32:34.2089503Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-17T21:32:34.2091367Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-17T21:32:34.2093283Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-17T21:32:34.2095046Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-17T21:32:34.2096940Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-17T21:32:34.2098728Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-17T21:32:34.2100463Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-17T21:32:34.2102126Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-17T21:32:34.2103746Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-17T21:32:34.2105354Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-17T21:32:34.2133797Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcommon-sense-perl amd64 3.74-2build6 [20.1 kB] 2021-05-17T21:32:34.2135610Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-17T21:32:34.2137245Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-17T21:32:34.2138824Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-17T21:32:34.2140368Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-17T21:32:34.2141922Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-17T21:32:34.2143458Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-17T21:32:34.2145050Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-17T21:32:34.2146905Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-17T21:32:34.2148631Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-17T21:32:34.2150288Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-17T21:32:34.2151890Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-17T21:32:34.2153449Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-17T21:32:34.2154880Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-17T21:32:34.2156552Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-17T21:32:34.2158177Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-17T21:32:34.2159737Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-17T21:32:34.2161357Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-17T21:32:34.2162905Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-17T21:32:34.2164490Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-17T21:32:34.2166056Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-17T21:32:34.2167574Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-17T21:32:34.2169100Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-17T21:32:34.2170585Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-17T21:32:34.2172121Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-17T21:32:34.2173918Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-17T21:32:34.2175672Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-17T21:32:34.2177210Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-17T21:32:34.2178887Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-17T21:32:34.2180558Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-17T21:32:34.2182019Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-perl all 4.02000-2 [80.9 kB] 2021-05-17T21:32:34.2183500Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-17T21:32:34.2185272Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-17T21:32:34.2187127Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-17T21:32:34.2188769Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-17T21:32:34.2190341Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-17T21:32:34.2191905Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-17T21:32:34.2193511Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-17T21:32:34.2195036Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-17T21:32:34.2196581Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-17T21:32:34.2198242Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-17T21:32:34.2199895Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-17T21:32:34.2201370Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-17T21:32:34.2202906Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-17T21:32:34.2204607Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-17T21:32:34.2206330Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtypes-serialiser-perl all 1.0-1 [12.1 kB] 2021-05-17T21:32:34.2207975Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-xs-perl amd64 4.020-1build1 [83.7 kB] 2021-05-17T21:32:34.2209503Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-17T21:32:34.2211096Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-17T21:32:34.2212740Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-17T21:32:34.2214364Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-17T21:32:34.2216050Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-17T21:32:34.2217702Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-17T21:32:34.2219238Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-17T21:32:34.2220805Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-17T21:32:34.2222398Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-17T21:32:34.2223956Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-17T21:32:34.2225556Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-17T21:32:34.2227420Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-17T21:32:34.2229133Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-17T21:32:34.2230830Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-17T21:32:34.2232455Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-17T21:32:34.2234111Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-17T21:32:34.2235647Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-17T21:32:34.2237186Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-17T21:32:34.2238724Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-17T21:32:34.2240234Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-17T21:32:34.2241799Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-17T21:32:34.2243512Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-17T21:32:34.2245275Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-17T21:32:34.2246993Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-17T21:32:34.2248690Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-17T21:32:34.2250302Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-17T21:32:34.2251828Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-17T21:32:34.2253484Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-17T21:32:34.2255179Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-17T21:32:34.2256809Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-17T21:32:34.2258506Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-17T21:32:34.2260093Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-17T21:32:34.2261616Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-17T21:32:34.2263281Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-17T21:32:34.2264933Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-17T21:32:34.2266713Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-17T21:32:34.2268313Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-17T21:32:34.2269943Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-17T21:32:34.2271444Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-17T21:32:34.2273026Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-17T21:32:34.2274511Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-17T21:32:34.2275644Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-17T21:32:34.2277081Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-17T21:32:34.2278653Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-17T21:32:34.2280212Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-17T21:32:34.2281610Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-17T21:32:34.4805709Z Fetched 8648 kB in 0s (43.7 MB/s) 2021-05-17T21:32:34.5166905Z Selecting previously unselected package dctrl-tools. 2021-05-17T21:32:34.5355327Z (Reading database ... 2021-05-17T21:32:34.5355861Z (Reading database ... 5% 2021-05-17T21:32:34.5356438Z (Reading database ... 10% 2021-05-17T21:32:34.5356928Z (Reading database ... 15% 2021-05-17T21:32:34.5357371Z (Reading database ... 20% 2021-05-17T21:32:34.5357848Z (Reading database ... 25% 2021-05-17T21:32:34.5358309Z (Reading database ... 30% 2021-05-17T21:32:34.5358819Z (Reading database ... 35% 2021-05-17T21:32:34.5359252Z (Reading database ... 40% 2021-05-17T21:32:34.5359725Z (Reading database ... 45% 2021-05-17T21:32:34.5360203Z (Reading database ... 50% 2021-05-17T21:32:34.5675716Z (Reading database ... 55% 2021-05-17T21:32:34.6086809Z (Reading database ... 60% 2021-05-17T21:32:34.6458932Z (Reading database ... 65% 2021-05-17T21:32:34.6845024Z (Reading database ... 70% 2021-05-17T21:32:34.7607428Z (Reading database ... 75% 2021-05-17T21:32:34.8429280Z (Reading database ... 80% 2021-05-17T21:32:34.9239937Z (Reading database ... 85% 2021-05-17T21:32:34.9742141Z (Reading database ... 90% 2021-05-17T21:32:35.0130567Z (Reading database ... 95% 2021-05-17T21:32:35.0131020Z (Reading database ... 100% 2021-05-17T21:32:35.0131638Z (Reading database ... 254809 files and directories currently installed.) 2021-05-17T21:32:35.0255014Z Preparing to unpack .../000-dctrl-tools_2.24-3_amd64.deb ... 2021-05-17T21:32:35.0347501Z Unpacking dctrl-tools (2.24-3) ... 2021-05-17T21:32:35.0628420Z Selecting previously unselected package libfile-which-perl. 2021-05-17T21:32:35.0881132Z Preparing to unpack .../001-libfile-which-perl_1.23-1_all.deb ... 2021-05-17T21:32:35.0887992Z Unpacking libfile-which-perl (1.23-1) ... 2021-05-17T21:32:35.1096908Z Selecting previously unselected package libfile-homedir-perl. 2021-05-17T21:32:35.1364913Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb 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Done 2021-05-17T21:33:03.3329211Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/R /usr/local/bin/R 2021-05-17T21:33:03.3446315Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/Rscript /usr/local/bin/Rscript 2021-05-17T21:33:03.3735534Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-05-17T21:33:03.3736034Z env: 2021-05-17T21:33:03.3736444Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:33:03.3736896Z TIC_DEPLOY_KEY: 2021-05-17T21:33:03.3737678Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:33:03.3739357Z GITHUB_PAT: *** 2021-05-17T21:33:03.3740131Z COVERALLS_TOKEN: *** 2021-05-17T21:33:03.3740602Z continue-on-error: true 2021-05-17T21:33:03.3741041Z VDIFFR_RUN_TESTS: 2021-05-17T21:33:03.3741506Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:33:03.3741918Z TZ: UTC 2021-05-17T21:33:03.3742287Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:33:03.3742793Z NOT_CRAN: true 2021-05-17T21:33:03.3743139Z ##[endgroup] 2021-05-17T21:33:03.4221553Z [command]sudo apt-get install -y texinfo 2021-05-17T21:33:03.5881176Z Reading package lists... 2021-05-17T21:33:03.7400632Z Building dependency tree... 2021-05-17T21:33:03.7416199Z Reading state information... 2021-05-17T21:33:03.9388461Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-17T21:33:03.9391136Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:04.1609358Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-17T21:33:04.1749110Z --2021-05-17 21:33:04-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-17T21:33:04.1844807Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-17T21:33:04.1897053Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-17T21:33:04.2342490Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-17T21:33:04.2344383Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-17T21:33:04.2346369Z --2021-05-17 21:33:04-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-17T21:33:04.3087049Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-17T21:33:04.3701470Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-17T21:33:04.6277776Z HTTP request sent, awaiting response... 302 Found 2021-05-17T21:33:04.6285283Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=6XOYhgSDXs7HUhivymSu1ngAcXlOGV5ioDSjLL4EHYc%3D&st=2021-05-17T21%3A32%3A04Z&se=2021-05-17T21%3A38%3A04Z&sp=r [following] 2021-05-17T21:33:04.6289909Z --2021-05-17 21:33:04-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=6XOYhgSDXs7HUhivymSu1ngAcXlOGV5ioDSjLL4EHYc%3D&st=2021-05-17T21%3A32%3A04Z&se=2021-05-17T21%3A38%3A04Z&sp=r 2021-05-17T21:33:04.6715522Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-17T21:33:04.7302650Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-17T21:33:04.9681914Z HTTP request sent, awaiting response... 200 OK 2021-05-17T21:33:04.9683465Z Length: 67306919 (64M) [application/octet-stream] 2021-05-17T21:33:04.9685347Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-17T21:33:05.5554021Z 2021-05-17T21:33:06.9896585Z 0K ........ ........ ........ ........ 49% 16.5M 2s 2021-05-17T21:33:08.1022076Z 32768K ........ ........ ........ ........ 99% 28.2M 0s 2021-05-17T21:33:08.1029051Z 65536K 100% 3.15M=3.1s 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2021-05-17T21:33:20.3388214Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/t4uO8KR4Vn/8vBKjBJGTI. 2021-05-17T21:33:20.3390137Z OK: optex.fmt/luatex 2021-05-17T21:33:20.3391523Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-17T21:33:20.3393166Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-17T21:33:21.5006649Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-17T21:33:21.5008441Z tlmgr: no updates available 2021-05-17T21:33:21.6043370Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-17T21:33:21.6043862Z with: 2021-05-17T21:33:21.6044255Z pandoc-version: 2.7.3 2021-05-17T21:33:21.6044622Z env: 2021-05-17T21:33:21.6045039Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:33:21.6045480Z TIC_DEPLOY_KEY: 2021-05-17T21:33:21.6046269Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:33:21.6048027Z GITHUB_PAT: *** 2021-05-17T21:33:21.6048802Z COVERALLS_TOKEN: *** 2021-05-17T21:33:21.6049283Z continue-on-error: true 2021-05-17T21:33:21.6049740Z VDIFFR_RUN_TESTS: 2021-05-17T21:33:21.6050195Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:33:21.6050625Z TZ: UTC 2021-05-17T21:33:21.6050985Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:33:21.6051385Z NOT_CRAN: true 2021-05-17T21:33:21.6051749Z ##[endgroup] 2021-05-17T21:33:21.9956875Z [command]sudo apt-get install -y gdebi-core 2021-05-17T21:33:22.0599666Z Reading package lists... 2021-05-17T21:33:22.2094092Z Building dependency tree... 2021-05-17T21:33:22.2112249Z Reading state information... 2021-05-17T21:33:22.4272856Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-17T21:33:22.4278991Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:22.4298178Z [command]sudo gdebi 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2021-05-17T21:33:23.0389113Z 2021-05-17T21:33:23.0389609Z Reading state information... 87% 2021-05-17T21:33:23.0425048Z 2021-05-17T21:33:23.0425556Z Reading state information... 89% 2021-05-17T21:33:23.0459126Z 2021-05-17T21:33:23.0459646Z Reading state information... 91% 2021-05-17T21:33:23.0496016Z 2021-05-17T21:33:23.0496512Z Reading state information... 93% 2021-05-17T21:33:23.0532341Z 2021-05-17T21:33:23.0532839Z Reading state information... 95% 2021-05-17T21:33:23.0571020Z 2021-05-17T21:33:23.0571534Z Reading state information... 97% 2021-05-17T21:33:23.0607753Z 2021-05-17T21:33:23.0608306Z Reading state information... 99% 2021-05-17T21:33:23.3277779Z Selecting previously unselected package pandoc. 2021-05-17T21:33:23.4401997Z (Reading database ... 261973 files and directories currently installed.) 2021-05-17T21:33:23.4523240Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-17T21:33:24.2130765Z Unpacking pandoc (2.7.3-1) ... 2021-05-17T21:33:25.4142961Z Setting up pandoc (2.7.3-1) ... 2021-05-17T21:33:25.4174131Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:33:26.1203374Z 2021-05-17T21:33:26.1204247Z 2021-05-17T21:33:26.1205021Z Reading state information... Done 2021-05-17T21:33:26.1552506Z ##[group]Run git config user.name adigherman 2021-05-17T21:33:26.1553161Z git config user.name adigherman 2021-05-17T21:33:26.1553713Z git config user.email adig@jhu.edu 2021-05-17T21:33:26.1594283Z shell: /usr/bin/bash -e {0} 2021-05-17T21:33:26.1594693Z env: 2021-05-17T21:33:26.1595145Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:33:26.1595603Z TIC_DEPLOY_KEY: 2021-05-17T21:33:26.1596406Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:33:26.1598206Z GITHUB_PAT: *** 2021-05-17T21:33:26.1599112Z COVERALLS_TOKEN: *** 2021-05-17T21:33:26.1599603Z continue-on-error: true 2021-05-17T21:33:26.1600063Z VDIFFR_RUN_TESTS: 2021-05-17T21:33:26.1600544Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:33:26.1600992Z TZ: UTC 2021-05-17T21:33:26.1601363Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:33:26.1601776Z NOT_CRAN: true 2021-05-17T21:33:26.1602158Z ##[endgroup] 2021-05-17T21:33:26.1860788Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-17T21:33:26.1861390Z env: 2021-05-17T21:33:26.1861834Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:33:26.1862275Z TIC_DEPLOY_KEY: 2021-05-17T21:33:26.1863072Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:33:26.1864709Z GITHUB_PAT: *** 2021-05-17T21:33:26.1865497Z COVERALLS_TOKEN: *** 2021-05-17T21:33:26.1865958Z continue-on-error: true 2021-05-17T21:33:26.1866567Z VDIFFR_RUN_TESTS: 2021-05-17T21:33:26.1867019Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:33:26.1867453Z TZ: UTC 2021-05-17T21:33:26.1867826Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:33:26.1868210Z NOT_CRAN: true 2021-05-17T21:33:26.1868567Z ##[endgroup] 2021-05-17T21:33:26.3814802Z Reading package lists... 2021-05-17T21:33:26.5315616Z Building dependency tree... 2021-05-17T21:33:26.5332898Z Reading state information... 2021-05-17T21:33:26.6647960Z The following additional packages will be installed: 2021-05-17T21:33:26.6650951Z cmake-data libjsoncpp1 librhash0 2021-05-17T21:33:26.6656778Z Suggested packages: 2021-05-17T21:33:26.6657594Z cmake-doc ninja-build 2021-05-17T21:33:26.7089453Z The following NEW packages will be installed: 2021-05-17T21:33:26.7100334Z cmake cmake-data libjsoncpp1 librhash0 2021-05-17T21:33:26.7274422Z 0 upgraded, 4 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:26.7275144Z Need to get 5470 kB of archives. 2021-05-17T21:33:26.7276456Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-17T21:33:26.7278320Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-17T21:33:26.7462487Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-17T21:33:26.7471010Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-17T21:33:26.7480858Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-17T21:33:27.1575913Z Fetched 5470 kB in 0s (90.4 MB/s) 2021-05-17T21:33:27.1931003Z Selecting previously unselected package cmake-data. 2021-05-17T21:33:27.2001591Z (Reading database ... 2021-05-17T21:33:27.2002169Z (Reading database ... 5% 2021-05-17T21:33:27.2002647Z (Reading database ... 10% 2021-05-17T21:33:27.2003108Z (Reading database ... 15% 2021-05-17T21:33:27.2003576Z (Reading database ... 20% 2021-05-17T21:33:27.2004033Z (Reading database ... 25% 2021-05-17T21:33:27.2004498Z (Reading database ... 30% 2021-05-17T21:33:27.2004964Z (Reading database ... 35% 2021-05-17T21:33:27.2005417Z (Reading database ... 40% 2021-05-17T21:33:27.2005880Z (Reading database ... 45% 2021-05-17T21:33:27.2006332Z (Reading database ... 50% 2021-05-17T21:33:27.2041262Z (Reading database ... 55% 2021-05-17T21:33:27.2080223Z (Reading database ... 60% 2021-05-17T21:33:27.2117241Z (Reading database ... 65% 2021-05-17T21:33:27.2243365Z (Reading database ... 70% 2021-05-17T21:33:27.2357740Z (Reading database ... 75% 2021-05-17T21:33:27.2638333Z (Reading database ... 80% 2021-05-17T21:33:27.2953514Z (Reading database ... 85% 2021-05-17T21:33:27.3102511Z (Reading database ... 90% 2021-05-17T21:33:27.3185336Z (Reading database ... 95% 2021-05-17T21:33:27.3186211Z (Reading database ... 100% 2021-05-17T21:33:27.3187067Z (Reading database ... 261980 files and directories currently installed.) 2021-05-17T21:33:27.3319045Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ... 2021-05-17T21:33:27.3464892Z Unpacking cmake-data (3.16.3-1ubuntu1) ... 2021-05-17T21:33:27.7924828Z Selecting previously unselected package libjsoncpp1:amd64. 2021-05-17T21:33:27.8176441Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... 2021-05-17T21:33:27.8230009Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-17T21:33:27.8587311Z Selecting previously unselected package librhash0:amd64. 2021-05-17T21:33:27.8814222Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-17T21:33:27.8825573Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-17T21:33:27.9228151Z Selecting previously unselected package cmake. 2021-05-17T21:33:27.9426268Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-17T21:33:27.9437594Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-17T21:33:28.3406025Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-17T21:33:28.3431262Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-17T21:33:28.3811155Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-17T21:33:28.3834533Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-17T21:33:28.3866509Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:33:29.4117343Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:33:31.3687919Z Reading package lists... 2021-05-17T21:33:31.5419268Z Building dependency tree... 2021-05-17T21:33:31.5435742Z Reading state information... 2021-05-17T21:33:31.6991681Z Suggested packages: 2021-05-17T21:33:31.6992910Z libssh-doc 2021-05-17T21:33:31.7453763Z The following NEW packages will be installed: 2021-05-17T21:33:31.7457714Z libssh-dev 2021-05-17T21:33:31.7666572Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:31.7667352Z Need to get 219 kB of archives. 2021-05-17T21:33:31.7668064Z After this operation, 1127 kB of additional disk space will be used. 2021-05-17T21:33:31.7669917Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-17T21:33:32.1583360Z Fetched 219 kB in 0s (10.7 MB/s) 2021-05-17T21:33:32.1863397Z Selecting previously unselected package libssh-dev:amd64. 2021-05-17T21:33:32.1933912Z (Reading database ... 2021-05-17T21:33:32.1934734Z (Reading database ... 5% 2021-05-17T21:33:32.1935381Z (Reading database ... 10% 2021-05-17T21:33:32.1935961Z (Reading database ... 15% 2021-05-17T21:33:32.1936544Z (Reading database ... 20% 2021-05-17T21:33:32.1937129Z (Reading database ... 25% 2021-05-17T21:33:32.1937754Z (Reading database ... 30% 2021-05-17T21:33:32.1938342Z (Reading database ... 35% 2021-05-17T21:33:32.1938907Z (Reading database ... 40% 2021-05-17T21:33:32.1939480Z (Reading database ... 45% 2021-05-17T21:33:32.1940056Z (Reading database ... 50% 2021-05-17T21:33:32.1958460Z (Reading database ... 55% 2021-05-17T21:33:32.1998728Z (Reading database ... 60% 2021-05-17T21:33:32.2037248Z (Reading database ... 65% 2021-05-17T21:33:32.2163928Z (Reading database ... 70% 2021-05-17T21:33:32.2282823Z (Reading database ... 75% 2021-05-17T21:33:32.2561833Z (Reading database ... 80% 2021-05-17T21:33:32.2885617Z (Reading database ... 85% 2021-05-17T21:33:32.3035629Z (Reading database ... 90% 2021-05-17T21:33:32.3116764Z (Reading database ... 95% 2021-05-17T21:33:32.3117728Z (Reading database ... 100% 2021-05-17T21:33:32.3118745Z (Reading database ... 264764 files and directories currently installed.) 2021-05-17T21:33:32.3256472Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-17T21:33:32.3264862Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-17T21:33:32.3989212Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-17T21:33:34.3460262Z Reading package lists... 2021-05-17T21:33:34.5041626Z Building dependency tree... 2021-05-17T21:33:34.5059873Z Reading state information... 2021-05-17T21:33:34.6974023Z The following NEW packages will be installed: 2021-05-17T21:33:34.6978378Z jags 2021-05-17T21:33:34.7214091Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:34.7214853Z Need to get 1562 kB of archives. 2021-05-17T21:33:34.7215560Z After this operation, 3615 kB of additional disk space will be used. 2021-05-17T21:33:34.7217321Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-17T21:33:35.1168154Z Fetched 1562 kB in 0s (41.5 MB/s) 2021-05-17T21:33:35.1508385Z Selecting previously unselected package jags. 2021-05-17T21:33:35.1518202Z (Reading database ... 2021-05-17T21:33:35.1518924Z (Reading database ... 5% 2021-05-17T21:33:35.1519393Z (Reading database ... 10% 2021-05-17T21:33:35.1520245Z (Reading database ... 15% 2021-05-17T21:33:35.1520719Z (Reading database ... 20% 2021-05-17T21:33:35.1521196Z (Reading database ... 25% 2021-05-17T21:33:35.1521678Z (Reading database ... 30% 2021-05-17T21:33:35.1522145Z (Reading database ... 35% 2021-05-17T21:33:35.1522594Z (Reading database ... 40% 2021-05-17T21:33:35.1523055Z (Reading database ... 45% 2021-05-17T21:33:35.1523507Z (Reading database ... 50% 2021-05-17T21:33:35.1557807Z (Reading database ... 55% 2021-05-17T21:33:35.1592718Z (Reading database ... 60% 2021-05-17T21:33:35.1629501Z (Reading database ... 65% 2021-05-17T21:33:35.1750555Z (Reading database ... 70% 2021-05-17T21:33:35.1859592Z (Reading database ... 75% 2021-05-17T21:33:35.2128731Z (Reading database ... 80% 2021-05-17T21:33:35.2442720Z (Reading database ... 85% 2021-05-17T21:33:35.2588391Z (Reading database ... 90% 2021-05-17T21:33:35.2666695Z (Reading database ... 95% 2021-05-17T21:33:35.2667351Z (Reading database ... 100% 2021-05-17T21:33:35.2668202Z (Reading database ... 264783 files and directories currently installed.) 2021-05-17T21:33:35.2796669Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-17T21:33:35.2821366Z Unpacking jags (4.3.0-3build1) ... 2021-05-17T21:33:35.4292532Z Setting up jags (4.3.0-3build1) ... 2021-05-17T21:33:35.4398969Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:33:36.1161982Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:33:38.1391213Z Reading package lists... 2021-05-17T21:33:38.3027930Z Building dependency tree... 2021-05-17T21:33:38.3046042Z Reading state information... 2021-05-17T21:33:38.4567529Z The following additional packages will be installed: 2021-05-17T21:33:38.4569701Z libnode64 libuv1-dev 2021-05-17T21:33:38.5040949Z The following NEW packages will be installed: 2021-05-17T21:33:38.5045051Z libnode-dev libnode64 libuv1-dev 2021-05-17T21:33:38.5311836Z 0 upgraded, 3 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:38.5312921Z Need to get 6239 kB of archives. 2021-05-17T21:33:38.5314073Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-17T21:33:38.5315993Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-17T21:33:38.5380156Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-17T21:33:38.6588252Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-17T21:33:39.0589584Z Fetched 6239 kB in 0s (37.9 MB/s) 2021-05-17T21:33:39.0858021Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-17T21:33:39.0926420Z (Reading database ... 2021-05-17T21:33:39.0927159Z (Reading database ... 5% 2021-05-17T21:33:39.0927801Z (Reading database ... 10% 2021-05-17T21:33:39.0928493Z (Reading database ... 15% 2021-05-17T21:33:39.0929155Z (Reading database ... 20% 2021-05-17T21:33:39.0929782Z (Reading database ... 25% 2021-05-17T21:33:39.0930418Z (Reading database ... 30% 2021-05-17T21:33:39.0931058Z (Reading database ... 35% 2021-05-17T21:33:39.0931675Z (Reading database ... 40% 2021-05-17T21:33:39.0932499Z (Reading database ... 45% 2021-05-17T21:33:39.0933134Z (Reading database ... 50% 2021-05-17T21:33:39.0951076Z (Reading database ... 55% 2021-05-17T21:33:39.0985814Z (Reading database ... 60% 2021-05-17T21:33:39.1025450Z (Reading database ... 65% 2021-05-17T21:33:39.1143137Z (Reading database ... 70% 2021-05-17T21:33:39.1254815Z (Reading database ... 75% 2021-05-17T21:33:39.1530279Z (Reading database ... 80% 2021-05-17T21:33:39.1836952Z (Reading database ... 85% 2021-05-17T21:33:39.1979632Z (Reading database ... 90% 2021-05-17T21:33:39.2056223Z (Reading database ... 95% 2021-05-17T21:33:39.2059367Z (Reading database ... 100% 2021-05-17T21:33:39.2060223Z (Reading database ... 264923 files and directories currently installed.) 2021-05-17T21:33:39.2187976Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-17T21:33:39.2198464Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-17T21:33:39.2506686Z Selecting previously unselected package libnode64:amd64. 2021-05-17T21:33:39.2791865Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T21:33:39.2807838Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T21:33:39.8708071Z Selecting previously unselected package libnode-dev:amd64. 2021-05-17T21:33:39.8929252Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T21:33:39.8940228Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T21:33:39.9793969Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-17T21:33:39.9824948Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T21:33:39.9847659Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T21:33:39.9871008Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:33:41.9769470Z Reading package lists... 2021-05-17T21:33:42.1489588Z Building dependency tree... 2021-05-17T21:33:42.1507023Z Reading state information... 2021-05-17T21:33:42.3057576Z The following additional packages will be installed: 2021-05-17T21:33:42.3060537Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-17T21:33:42.3065257Z Suggested packages: 2021-05-17T21:33:42.3066664Z libfftw3-doc 2021-05-17T21:33:42.3513992Z The following NEW packages will be installed: 2021-05-17T21:33:42.3520448Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-17T21:33:42.3718088Z 0 upgraded, 5 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:42.3718783Z Need to get 3986 kB of archives. 2021-05-17T21:33:42.3719563Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-17T21:33:42.3721392Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-17T21:33:42.3883470Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-17T21:33:42.4194254Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-17T21:33:42.5497072Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-17T21:33:42.5499012Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-17T21:33:42.9826618Z Fetched 3986 kB in 0s (17.4 MB/s) 2021-05-17T21:33:43.1406285Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-17T21:33:43.1482028Z (Reading database ... 2021-05-17T21:33:43.1483519Z (Reading database ... 5% 2021-05-17T21:33:43.1484008Z (Reading database ... 10% 2021-05-17T21:33:43.1484497Z (Reading database ... 15% 2021-05-17T21:33:43.1484953Z (Reading database ... 20% 2021-05-17T21:33:43.1485418Z (Reading database ... 25% 2021-05-17T21:33:43.1485892Z (Reading database ... 30% 2021-05-17T21:33:43.1486361Z (Reading database ... 35% 2021-05-17T21:33:43.1486825Z (Reading database ... 40% 2021-05-17T21:33:43.1487276Z (Reading database ... 45% 2021-05-17T21:33:43.1487912Z (Reading database ... 50% 2021-05-17T21:33:43.1522846Z (Reading database ... 55% 2021-05-17T21:33:43.1559027Z (Reading database ... 60% 2021-05-17T21:33:43.1596510Z (Reading database ... 65% 2021-05-17T21:33:43.1723788Z (Reading database ... 70% 2021-05-17T21:33:43.1845906Z (Reading database ... 75% 2021-05-17T21:33:43.2126387Z (Reading database ... 80% 2021-05-17T21:33:43.2447008Z (Reading database ... 85% 2021-05-17T21:33:43.2594475Z (Reading database ... 90% 2021-05-17T21:33:43.2672677Z (Reading database ... 95% 2021-05-17T21:33:43.2673262Z (Reading database ... 100% 2021-05-17T21:33:43.2674110Z (Reading database ... 265059 files and directories currently installed.) 2021-05-17T21:33:43.2810211Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:33:43.2835678Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.3348142Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-17T21:33:43.3629543Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:33:43.3639738Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.4529517Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-17T21:33:43.4753023Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:33:43.4769978Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.5668355Z Selecting previously unselected package libfftw3-bin. 2021-05-17T21:33:43.5946498Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:33:43.5957509Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.6269531Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-17T21:33:43.6520091Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:33:43.6528872Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.9207752Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.9232924Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.9255965Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.9278389Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.9306928Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:33:43.9335776Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:33:44.6659280Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:33:46.6390991Z Reading package lists... 2021-05-17T21:33:46.7971942Z Building dependency tree... 2021-05-17T21:33:46.7988244Z Reading state information... 2021-05-17T21:33:46.9436343Z The following additional packages will be installed: 2021-05-17T21:33:46.9438776Z libdcmtk14 2021-05-17T21:33:46.9892084Z The following NEW packages will be installed: 2021-05-17T21:33:46.9896579Z dcmtk libdcmtk14 2021-05-17T21:33:47.0081338Z 0 upgraded, 2 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:47.0082078Z Need to get 5546 kB of archives. 2021-05-17T21:33:47.0082816Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-17T21:33:47.0084643Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-17T21:33:47.0967703Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-17T21:33:47.5003187Z Fetched 5546 kB in 0s (45.4 MB/s) 2021-05-17T21:33:47.5347463Z Selecting previously unselected package libdcmtk14. 2021-05-17T21:33:47.5348227Z (Reading database ... 2021-05-17T21:33:47.5348695Z (Reading database ... 5% 2021-05-17T21:33:47.5349170Z (Reading database ... 10% 2021-05-17T21:33:47.5349645Z (Reading database ... 15% 2021-05-17T21:33:47.5350103Z (Reading database ... 20% 2021-05-17T21:33:47.5350588Z (Reading database ... 25% 2021-05-17T21:33:47.5351044Z (Reading database ... 30% 2021-05-17T21:33:47.5351506Z (Reading database ... 35% 2021-05-17T21:33:47.5351971Z (Reading database ... 40% 2021-05-17T21:33:47.5352427Z (Reading database ... 45% 2021-05-17T21:33:47.5353065Z (Reading database ... 50% 2021-05-17T21:33:47.5380465Z (Reading database ... 55% 2021-05-17T21:33:47.5416541Z (Reading database ... 60% 2021-05-17T21:33:47.5453588Z (Reading database ... 65% 2021-05-17T21:33:47.5571591Z (Reading database ... 70% 2021-05-17T21:33:47.5680213Z (Reading database ... 75% 2021-05-17T21:33:47.5936107Z (Reading database ... 80% 2021-05-17T21:33:47.6246195Z (Reading database ... 85% 2021-05-17T21:33:47.6389092Z (Reading database ... 90% 2021-05-17T21:33:47.6466688Z (Reading database ... 95% 2021-05-17T21:33:47.6467494Z (Reading database ... 100% 2021-05-17T21:33:47.6468421Z (Reading database ... 265150 files and directories currently installed.) 2021-05-17T21:33:47.6600059Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-17T21:33:47.6615655Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-17T21:33:48.1438741Z Selecting previously unselected package dcmtk. 2021-05-17T21:33:48.1589352Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-17T21:33:48.2523171Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-17T21:33:48.3827029Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-17T21:33:48.3848114Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-17T21:33:48.3964831Z Adding `dcmtk' group to system ... 2021-05-17T21:33:48.4800737Z Adding `dcmtk' user to system ... 2021-05-17T21:33:48.6834998Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-17T21:33:48.9360326Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:33:50.4270883Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:33:52.3796131Z Reading package lists... 2021-05-17T21:33:52.5398260Z Building dependency tree... 2021-05-17T21:33:52.5415248Z Reading state information... 2021-05-17T21:33:52.7577919Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-17T21:33:52.7579262Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:52.8185799Z Reading package lists... 2021-05-17T21:33:52.9846566Z Building dependency tree... 2021-05-17T21:33:52.9863660Z Reading state information... 2021-05-17T21:33:53.2249316Z libpng-dev is already the newest version (1.6.37-2). 2021-05-17T21:33:53.2250879Z libpng-dev set to manually installed. 2021-05-17T21:33:53.2256819Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:53.2866752Z Reading package lists... 2021-05-17T21:33:53.4577450Z Building dependency tree... 2021-05-17T21:33:53.4594986Z Reading state information... 2021-05-17T21:33:53.6119940Z The following additional packages will be installed: 2021-05-17T21:33:53.6122930Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-17T21:33:53.6128482Z Suggested packages: 2021-05-17T21:33:53.6130053Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-17T21:33:53.6131859Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-17T21:33:53.6133292Z fonts-arphic-uming fonts-nanum 2021-05-17T21:33:53.6608368Z The following NEW packages will be installed: 2021-05-17T21:33:53.6610604Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-17T21:33:53.6615427Z libpoppler97 poppler-data 2021-05-17T21:33:53.6796524Z 0 upgraded, 6 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:53.6797527Z Need to get 2582 kB of archives. 2021-05-17T21:33:53.6798683Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-17T21:33:53.6800748Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-17T21:33:53.7062381Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-17T21:33:53.7090025Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-17T21:33:53.7239549Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-17T21:33:53.7249100Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-17T21:33:53.7254096Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-17T21:33:54.1168160Z Fetched 2582 kB in 0s (43.3 MB/s) 2021-05-17T21:33:54.1483128Z Selecting previously unselected package poppler-data. 2021-05-17T21:33:54.1550341Z (Reading database ... 2021-05-17T21:33:54.1551145Z (Reading database ... 5% 2021-05-17T21:33:54.1551824Z (Reading database ... 10% 2021-05-17T21:33:54.1552480Z (Reading database ... 15% 2021-05-17T21:33:54.1553149Z (Reading database ... 20% 2021-05-17T21:33:54.1553957Z (Reading database ... 25% 2021-05-17T21:33:54.1554620Z (Reading database ... 30% 2021-05-17T21:33:54.1555242Z (Reading database ... 35% 2021-05-17T21:33:54.1555879Z (Reading database ... 40% 2021-05-17T21:33:54.1556504Z (Reading database ... 45% 2021-05-17T21:33:54.1557133Z (Reading database ... 50% 2021-05-17T21:33:54.1587222Z (Reading database ... 55% 2021-05-17T21:33:54.1621291Z (Reading database ... 60% 2021-05-17T21:33:54.1657768Z (Reading database ... 65% 2021-05-17T21:33:54.1779333Z (Reading database ... 70% 2021-05-17T21:33:54.1891418Z (Reading database ... 75% 2021-05-17T21:33:54.2150591Z (Reading database ... 80% 2021-05-17T21:33:54.2460455Z (Reading database ... 85% 2021-05-17T21:33:54.2606479Z (Reading database ... 90% 2021-05-17T21:33:54.2684479Z (Reading database ... 95% 2021-05-17T21:33:54.2685072Z (Reading database ... 100% 2021-05-17T21:33:54.2685903Z (Reading database ... 265385 files and directories currently installed.) 2021-05-17T21:33:54.2817145Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-17T21:33:54.2825791Z Unpacking poppler-data (0.4.9-2) ... 2021-05-17T21:33:54.5188611Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-17T21:33:54.5412029Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-17T21:33:54.5475076Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-17T21:33:54.5868249Z Selecting previously unselected package libpoppler97:amd64. 2021-05-17T21:33:54.6120146Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T21:33:54.6130316Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:33:54.7268799Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-17T21:33:54.7503964Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T21:33:54.7520090Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:33:54.7828082Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-17T21:33:54.8049846Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T21:33:54.8066749Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:33:54.8347804Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-17T21:33:54.8568808Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T21:33:54.8581147Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:33:54.9199095Z Setting up poppler-data (0.4.9-2) ... 2021-05-17T21:33:54.9308059Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-17T21:33:54.9397361Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:33:54.9425150Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:33:54.9444113Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:33:54.9466580Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:33:54.9502831Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T21:33:54.9869507Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:33:56.9490992Z Reading package lists... 2021-05-17T21:33:57.1072645Z Building dependency tree... 2021-05-17T21:33:57.1091753Z Reading state information... 2021-05-17T21:33:57.2581683Z The following additional packages will be installed: 2021-05-17T21:33:57.2587822Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-17T21:33:57.2594259Z Suggested packages: 2021-05-17T21:33:57.2596350Z libhdf5-doc 2021-05-17T21:33:57.3031351Z The following NEW packages will be installed: 2021-05-17T21:33:57.3034817Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-17T21:33:57.3036910Z libsz2 2021-05-17T21:33:57.3212794Z 0 upgraded, 7 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:57.3214033Z Need to get 4074 kB of archives. 2021-05-17T21:33:57.3214951Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-17T21:33:57.3217249Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-17T21:33:57.3227429Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-17T21:33:57.3231690Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-17T21:33:57.3236094Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-17T21:33:57.3448248Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-17T21:33:57.3460151Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-17T21:33:57.3464395Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-17T21:33:57.7581246Z Fetched 4074 kB in 0s (68.8 MB/s) 2021-05-17T21:33:57.7909312Z Selecting previously unselected package hdf5-helpers. 2021-05-17T21:33:57.7979335Z (Reading database ... 2021-05-17T21:33:57.7979824Z (Reading database ... 5% 2021-05-17T21:33:57.7980285Z (Reading database ... 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2021-05-17T21:33:57.9092216Z (Reading database ... 265945 files and directories currently installed.) 2021-05-17T21:33:57.9223766Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T21:33:57.9238062Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:33:57.9507284Z Selecting previously unselected package libaec0:amd64. 2021-05-17T21:33:57.9793034Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-17T21:33:57.9901957Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-17T21:33:58.0121253Z Selecting previously unselected package libsz2:amd64. 2021-05-17T21:33:58.0408885Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-17T21:33:58.0507343Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-17T21:33:58.0788604Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-17T21:33:58.1030361Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T21:33:58.1040253Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:33:58.2429483Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-17T21:33:58.2682722Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T21:33:58.2695140Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:33:58.3129229Z Selecting previously unselected package libaec-dev:amd64. 2021-05-17T21:33:58.3388970Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-17T21:33:58.3488675Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-17T21:33:58.3788593Z Selecting previously unselected package libhdf5-dev. 2021-05-17T21:33:58.4026502Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T21:33:58.4037641Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:33:58.7330624Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:33:58.7389636Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-17T21:33:58.7414242Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-17T21:33:58.7439857Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-17T21:33:58.7461455Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:33:58.7487536Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:33:58.7507740Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:33:58.7589209Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-17T21:33:58.7617910Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:33:59.4839940Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:01.5592826Z Reading package lists... 2021-05-17T21:34:01.7474096Z Building dependency tree... 2021-05-17T21:34:01.7492347Z Reading state information... 2021-05-17T21:34:01.9045288Z The following additional packages will be installed: 2021-05-17T21:34:01.9048916Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-17T21:34:01.9527834Z The following NEW packages will be installed: 2021-05-17T21:34:01.9533047Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-17T21:34:01.9535767Z mesa-common-dev 2021-05-17T21:34:01.9713240Z 0 upgraded, 6 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:01.9714330Z Need to get 1761 kB of archives. 2021-05-17T21:34:01.9715465Z After this operation, 5442 kB of additional disk space will be used. 2021-05-17T21:34:01.9718087Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-17T21:34:01.9754669Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-17T21:34:01.9759529Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-17T21:34:01.9773469Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-17T21:34:01.9793401Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-17T21:34:01.9822204Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-17T21:34:02.3872084Z Fetched 1761 kB in 0s (49.7 MB/s) 2021-05-17T21:34:02.4160262Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-17T21:34:02.4230349Z (Reading database ... 2021-05-17T21:34:02.4231073Z (Reading database ... 5% 2021-05-17T21:34:02.4231765Z (Reading database ... 10% 2021-05-17T21:34:02.4232400Z (Reading database ... 15% 2021-05-17T21:34:02.4233043Z (Reading database ... 20% 2021-05-17T21:34:02.4233678Z (Reading database ... 25% 2021-05-17T21:34:02.4234316Z (Reading database ... 30% 2021-05-17T21:34:02.4234953Z (Reading 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(2.4.102-1ubuntu1~20.04.1) ... 2021-05-17T21:34:02.5910105Z Selecting previously unselected package libglx-dev:amd64. 2021-05-17T21:34:02.6199432Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T21:34:02.6207027Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T21:34:02.6749558Z Selecting previously unselected package libgl-dev:amd64. 2021-05-17T21:34:02.6992994Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T21:34:02.7007307Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T21:34:02.7388020Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-17T21:34:02.7630473Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-17T21:34:02.7658989Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-17T21:34:02.8034318Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-17T21:34:02.8329038Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-17T21:34:03.7232613Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-17T21:34:03.7238642Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-17T21:34:03.7240001Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-17T21:34:03.7241304Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T21:34:03.7242913Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-17T21:34:03.7243810Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T21:34:03.7244675Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-17T21:34:03.7245531Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T21:34:03.7246391Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-17T21:34:03.7247343Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T21:34:03.7248189Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:04.4204618Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:06.4069310Z Reading package lists... 2021-05-17T21:34:06.5750355Z Building dependency tree... 2021-05-17T21:34:06.5767059Z Reading state information... 2021-05-17T21:34:06.7316538Z The following additional packages will be installed: 2021-05-17T21:34:06.7318716Z libprotobuf-lite17 libprotoc17 2021-05-17T21:34:06.7781569Z The following NEW packages will be installed: 2021-05-17T21:34:06.7787928Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-17T21:34:06.7791943Z protobuf-compiler 2021-05-17T21:34:06.7975368Z 0 upgraded, 5 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:06.7976660Z Need to get 2754 kB of archives. 2021-05-17T21:34:06.7977468Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-17T21:34:06.7979442Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-17T21:34:06.8037330Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-17T21:34:06.8252745Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-17T21:34:06.8506861Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-17T21:34:06.8616626Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-17T21:34:07.2540280Z Fetched 2754 kB in 0s (35.1 MB/s) 2021-05-17T21:34:07.2827582Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-17T21:34:07.2900762Z (Reading database ... 2021-05-17T21:34:07.2901298Z (Reading database ... 5% 2021-05-17T21:34:07.2901758Z (Reading database ... 10% 2021-05-17T21:34:07.2902232Z (Reading database ... 15% 2021-05-17T21:34:07.2902706Z (Reading 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2021-05-17T21:34:07.4254997Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:07.4272706Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.4669058Z Selecting previously unselected package libprotoc17:amd64. 2021-05-17T21:34:07.4893807Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:07.4903120Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.5788725Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-17T21:34:07.6020988Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:07.6034126Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.7588898Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-17T21:34:07.7842313Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:07.7852548Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.8948933Z Selecting previously unselected package protobuf-compiler. 2021-05-17T21:34:07.9205535Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:07.9222911Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.9794016Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.9824761Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.9858205Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.9891154Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.9916497Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:07.9952090Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:08.6881112Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:10.7060684Z Reading package lists... 2021-05-17T21:34:10.8813375Z Building dependency tree... 2021-05-17T21:34:10.8831485Z Reading state information... 2021-05-17T21:34:11.0404311Z The following additional packages will be installed: 2021-05-17T21:34:11.0406778Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-17T21:34:11.0408538Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-17T21:34:11.0410995Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-17T21:34:11.0413106Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-17T21:34:11.0414678Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-17T21:34:11.0416140Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-17T21:34:11.0417708Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-17T21:34:11.0419056Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-17T21:34:11.0420353Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-17T21:34:11.0421660Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-17T21:34:11.0423209Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-17T21:34:11.0424488Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-17T21:34:11.0425762Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-17T21:34:11.0428668Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-17T21:34:11.0430368Z Suggested packages: 2021-05-17T21:34:11.0431414Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-17T21:34:11.0432626Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-17T21:34:11.0433993Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-17T21:34:11.0435234Z nvidia-legacy-304xx-vdpau-driver 2021-05-17T21:34:11.1132520Z The following NEW packages will be installed: 2021-05-17T21:34:11.1137309Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-17T21:34:11.1138545Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-17T21:34:11.1141147Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-17T21:34:11.1143631Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-17T21:34:11.1148143Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-17T21:34:11.1151881Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-17T21:34:11.1154711Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-17T21:34:11.1158819Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-17T21:34:11.1161205Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-17T21:34:11.1163699Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-17T21:34:11.1166181Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-17T21:34:11.1168568Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-17T21:34:11.1172705Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-17T21:34:11.1179055Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-17T21:34:11.1393197Z 0 upgraded, 76 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:11.1393942Z Need to get 47.1 MB of archives. 2021-05-17T21:34:11.1394656Z After this operation, 195 MB of additional disk space will be used. 2021-05-17T21:34:11.1396379Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-17T21:34:11.1602095Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-17T21:34:11.1611989Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-17T21:34:11.1620412Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-17T21:34:11.1630505Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-17T21:34:11.1640283Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-17T21:34:11.1648204Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-17T21:34:11.1692342Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-17T21:34:11.3169908Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-17T21:34:11.3180626Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-17T21:34:11.3202108Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-17T21:34:11.3231074Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-17T21:34:11.3239762Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-17T21:34:11.3271152Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-17T21:34:11.3281727Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-17T21:34:11.3299508Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-17T21:34:11.3320449Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-17T21:34:11.3350914Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-17T21:34:11.3365286Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-17T21:34:11.3410786Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-17T21:34:11.3433365Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-17T21:34:11.3526897Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-17T21:34:11.3690046Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-17T21:34:11.3719500Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-17T21:34:11.3730231Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-17T21:34:11.3822840Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-17T21:34:11.4760913Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-17T21:34:11.4768665Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-17T21:34:11.4788194Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-17T21:34:11.4810601Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-17T21:34:11.4839008Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-17T21:34:11.4849268Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-17T21:34:11.4879687Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-17T21:34:11.4916509Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-17T21:34:11.5070921Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-17T21:34:11.5145489Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-17T21:34:11.5390539Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-17T21:34:11.5397139Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-17T21:34:11.7751111Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-17T21:34:11.7759764Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-17T21:34:11.7766163Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-17T21:34:11.7775597Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-17T21:34:11.7784457Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-17T21:34:11.7798142Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-17T21:34:11.7812078Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-17T21:34:11.7972317Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-17T21:34:11.7988929Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-17T21:34:11.8020546Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-17T21:34:11.8028657Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-17T21:34:11.8236481Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-17T21:34:11.8262105Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-17T21:34:11.8341208Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-17T21:34:11.8350671Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-17T21:34:11.8357304Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-17T21:34:11.8378187Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-17T21:34:11.8385479Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-17T21:34:11.8436105Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-17T21:34:11.8486694Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-17T21:34:11.8498226Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-17T21:34:11.8581763Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-17T21:34:11.8591545Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-17T21:34:11.8614175Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-17T21:34:11.8646927Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-17T21:34:11.8688953Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-17T21:34:11.8777822Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-17T21:34:11.8792907Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-17T21:34:11.8807410Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-17T21:34:11.9039303Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-17T21:34:11.9054120Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-17T21:34:11.9372663Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-17T21:34:11.9384282Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-17T21:34:11.9399249Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-17T21:34:11.9861207Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-17T21:34:12.0349232Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-17T21:34:12.0487712Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-17T21:34:12.0492745Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-17T21:34:12.6062395Z Fetched 47.1 MB in 1s (50.9 MB/s) 2021-05-17T21:34:12.6372908Z Selecting previously unselected package libaom0:amd64. 2021-05-17T21:34:12.6443949Z (Reading database ... 2021-05-17T21:34:12.6444609Z (Reading database ... 5% 2021-05-17T21:34:12.6445206Z (Reading database ... 10% 2021-05-17T21:34:12.6445756Z (Reading database ... 15% 2021-05-17T21:34:12.6446346Z (Reading database ... 20% 2021-05-17T21:34:12.6446910Z (Reading database ... 25% 2021-05-17T21:34:12.6447450Z (Reading database ... 30% 2021-05-17T21:34:12.6447999Z (Reading database ... 35% 2021-05-17T21:34:12.6448554Z (Reading database ... 40% 2021-05-17T21:34:12.6449101Z (Reading database ... 45% 2021-05-17T21:34:12.6449652Z (Reading database ... 50% 2021-05-17T21:34:12.6487443Z (Reading database ... 55% 2021-05-17T21:34:12.6520808Z (Reading database ... 60% 2021-05-17T21:34:12.6557753Z (Reading database ... 65% 2021-05-17T21:34:12.6682083Z (Reading database ... 70% 2021-05-17T21:34:12.6801578Z (Reading database ... 75% 2021-05-17T21:34:12.7068563Z (Reading database ... 80% 2021-05-17T21:34:12.7382994Z (Reading database ... 85% 2021-05-17T21:34:12.7530082Z (Reading database ... 90% 2021-05-17T21:34:12.7609409Z (Reading database ... 95% 2021-05-17T21:34:12.7610027Z (Reading database ... 100% 2021-05-17T21:34:12.7610883Z (Reading database ... 266807 files and directories currently installed.) 2021-05-17T21:34:12.7743853Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ... 2021-05-17T21:34:12.7767759Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-17T21:34:12.9107922Z Selecting previously unselected package libva2:amd64. 2021-05-17T21:34:12.9341533Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ... 2021-05-17T21:34:12.9352453Z Unpacking libva2:amd64 (2.7.0-2) ... 2021-05-17T21:34:12.9668240Z Selecting previously unselected package libva-drm2:amd64. 2021-05-17T21:34:12.9907171Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-17T21:34:12.9920142Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-17T21:34:13.0228065Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-17T21:34:13.0449911Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-17T21:34:13.0461344Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-17T21:34:13.0748378Z Selecting previously unselected package libvdpau1:amd64. 2021-05-17T21:34:13.0992450Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-17T21:34:13.1002298Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-17T21:34:13.1308663Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-17T21:34:13.1588781Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-17T21:34:13.1604799Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-17T21:34:13.1947963Z Selecting previously unselected package libavutil56:amd64. 2021-05-17T21:34:13.2167236Z Preparing to unpack .../06-libavutil56_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-17T21:34:13.2177017Z Unpacking libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:13.2668641Z Selecting previously unselected package libcodec2-0.9:amd64. 2021-05-17T21:34:13.2920180Z Preparing to unpack .../07-libcodec2-0.9_0.9.2-2_amd64.deb ... 2021-05-17T21:34:13.2933724Z Unpacking libcodec2-0.9:amd64 (0.9.2-2) ... 2021-05-17T21:34:13.9747708Z Selecting previously unselected package libgsm1:amd64. 2021-05-17T21:34:13.9967314Z Preparing to unpack .../08-libgsm1_1.0.18-2_amd64.deb ... 2021-05-17T21:34:13.9977918Z Unpacking libgsm1:amd64 (1.0.18-2) ... 2021-05-17T21:34:14.0307723Z Selecting previously unselected package libmp3lame0:amd64. 2021-05-17T21:34:14.0518008Z Preparing to unpack .../09-libmp3lame0_3.100-3_amd64.deb ... 2021-05-17T21:34:14.0529115Z Unpacking libmp3lame0:amd64 (3.100-3) ... 2021-05-17T21:34:14.0934436Z Selecting previously unselected package libopus0:amd64. 2021-05-17T21:34:14.1228696Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-17T21:34:14.1241547Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-17T21:34:14.1748328Z Selecting previously unselected package libshine3:amd64. 2021-05-17T21:34:14.2018761Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-17T21:34:14.2032952Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-17T21:34:14.2347369Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-17T21:34:14.2570336Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-17T21:34:14.2579640Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-17T21:34:14.2868068Z Selecting previously unselected package libspeex1:amd64. 2021-05-17T21:34:14.3114240Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 2021-05-17T21:34:14.3124120Z Unpacking libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1) ... 2021-05-17T21:34:14.3407990Z Selecting previously unselected package libsoxr0:amd64. 2021-05-17T21:34:14.3699955Z Preparing to unpack .../14-libsoxr0_0.1.3-2build1_amd64.deb ... 2021-05-17T21:34:14.3710227Z Unpacking libsoxr0:amd64 (0.1.3-2build1) ... 2021-05-17T21:34:14.4107444Z Selecting previously unselected package libswresample3:amd64. 2021-05-17T21:34:14.4316002Z Preparing to unpack .../15-libswresample3_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-17T21:34:14.4330496Z Unpacking libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:14.4667427Z Selecting previously unselected package libtheora0:amd64. 2021-05-17T21:34:14.4908387Z Preparing to unpack .../16-libtheora0_1.1.1+dfsg.1-15ubuntu2_amd64.deb ... 2021-05-17T21:34:14.4917312Z Unpacking libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-17T21:34:14.5347777Z Selecting previously unselected package libtwolame0:amd64. 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Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-17T21:34:21.1673679Z Setting up libasyncns0:amd64 (0.8-6) ... 2021-05-17T21:34:21.1709103Z Setting up libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-17T21:34:21.1745287Z Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-17T21:34:21.1770242Z Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... 2021-05-17T21:34:21.1797428Z Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-17T21:34:21.1822089Z Setting up libopenal-data (1:1.19.1-1) ... 2021-05-17T21:34:21.1853695Z Setting up mesa-va-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T21:34:21.1887420Z Setting up libbluray2:amd64 (1:1.2.0-1) ... 2021-05-17T21:34:21.1916727Z Setting up libsamplerate0:amd64 (0.1.9-2) ... 2021-05-17T21:34:21.1942884Z Setting up libva-x11-2:amd64 (2.7.0-2) ... 2021-05-17T21:34:21.1968134Z Setting up libopenmpt0:amd64 (0.4.11-1build1) ... 2021-05-17T21:34:21.1999439Z Setting up libzvbi-common (0.2.35-17) ... 2021-05-17T21:34:21.2036324Z Setting up libmp3lame0:amd64 (3.100-3) ... 2021-05-17T21:34:21.2064803Z Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... 2021-05-17T21:34:21.2103653Z Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-17T21:34:21.2131973Z Setting up libiec61883-0:amd64 (1.2.0-3) ... 2021-05-17T21:34:21.2161594Z Setting up libserd-0-0:amd64 (0.30.2-1) ... 2021-05-17T21:34:21.2201583Z Setting up libavc1394-0:amd64 (0.5.4-5) ... 2021-05-17T21:34:21.2231526Z Setting up mesa-vdpau-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T21:34:21.2254945Z Setting up libzvbi0:amd64 (0.2.35-17) ... 2021-05-17T21:34:21.2281402Z Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... 2021-05-17T21:34:21.2313353Z Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... 2021-05-17T21:34:21.2341285Z Setting up libopenal1:amd64 (1:1.19.1-1) ... 2021-05-17T21:34:21.2444028Z Setting up libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.2463082Z Setting up va-driver-all:amd64 (2.7.0-2) ... 2021-05-17T21:34:21.2495511Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.2522528Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-05-17T21:34:21.2556537Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-05-17T21:34:21.2592115Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-05-17T21:34:21.2624728Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-05-17T21:34:21.2665534Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-17T21:34:21.2691334Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.2718219Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-05-17T21:34:21.2743442Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-17T21:34:21.2766395Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-05-17T21:34:21.2858767Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.2888983Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.2924563Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.2961491Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-17T21:34:21.2988748Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-17T21:34:21.3023073Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.3058604Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.3093005Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.3127058Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:21.3210586Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:22.3344637Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:24.3254684Z Reading package lists... 2021-05-17T21:34:24.4829641Z Building dependency tree... 2021-05-17T21:34:24.4848646Z Reading state information... 2021-05-17T21:34:24.6322644Z The following additional packages will be installed: 2021-05-17T21:34:24.6325636Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-17T21:34:24.6796042Z The following NEW packages will be installed: 2021-05-17T21:34:24.6798031Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-17T21:34:24.6802014Z libmagick++-dev 2021-05-17T21:34:24.7005312Z 0 upgraded, 4 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:24.7005999Z Need to get 309 kB of archives. 2021-05-17T21:34:24.7006914Z After this operation, 2202 kB of additional disk space will be used. 2021-05-17T21:34:24.7009654Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-17T21:34:24.7031170Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-17T21:34:24.7054022Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-17T21:34:24.7072292Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-17T21:34:25.1038687Z Fetched 309 kB in 0s (13.4 MB/s) 2021-05-17T21:34:25.1388854Z Selecting previously unselected package libmagick++-6-headers. 2021-05-17T21:34:25.1437140Z (Reading database ... 2021-05-17T21:34:25.1437848Z (Reading database ... 5% 2021-05-17T21:34:25.1438542Z (Reading database ... 10% 2021-05-17T21:34:25.1439220Z (Reading database ... 15% 2021-05-17T21:34:25.1439860Z (Reading database ... 20% 2021-05-17T21:34:25.1440483Z (Reading database ... 25% 2021-05-17T21:34:25.1441110Z (Reading database ... 30% 2021-05-17T21:34:25.1441764Z (Reading database ... 35% 2021-05-17T21:34:25.1442384Z (Reading database ... 40% 2021-05-17T21:34:25.1443015Z (Reading database ... 45% 2021-05-17T21:34:25.1443630Z (Reading database ... 50% 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Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-17T21:34:25.4375290Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:34:25.4788220Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-17T21:34:25.5005955Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-17T21:34:25.5018153Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:34:25.5708788Z Selecting previously unselected package libmagick++-dev. 2021-05-17T21:34:25.5956131Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-17T21:34:25.6030137Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:34:25.6587151Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:34:25.6676872Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:34:25.6707685Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:34:25.6733172Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:34:25.6815368Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:27.6593806Z Reading package lists... 2021-05-17T21:34:27.8213881Z Building dependency tree... 2021-05-17T21:34:27.8234820Z Reading state information... 2021-05-17T21:34:27.9699283Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-17T21:34:27.9700587Z The following additional packages will be installed: 2021-05-17T21:34:27.9703662Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-17T21:34:27.9709266Z libijs-0.35 libjbig2dec0 2021-05-17T21:34:27.9716828Z Suggested packages: 2021-05-17T21:34:27.9719118Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-17T21:34:27.9720469Z ghostscript-x 2021-05-17T21:34:28.0178894Z The following NEW packages will be installed: 2021-05-17T21:34:28.0183868Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-17T21:34:28.0192275Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-17T21:34:28.0377620Z 0 upgraded, 8 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:28.0378358Z Need to get 11.2 MB of archives. 2021-05-17T21:34:28.0379078Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-17T21:34:28.0380815Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-17T21:34:28.0928434Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-17T21:34:28.0949604Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-17T21:34:28.2069462Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-17T21:34:28.2174921Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-17T21:34:28.2190449Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-17T21:34:28.2197606Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-17T21:34:28.2422705Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-17T21:34:28.6422453Z Fetched 11.2 MB in 0s (51.2 MB/s) 2021-05-17T21:34:28.6768700Z Selecting previously unselected package fonts-droid-fallback. 2021-05-17T21:34:28.6842777Z (Reading database ... 2021-05-17T21:34:28.6843460Z (Reading database ... 5% 2021-05-17T21:34:28.6844060Z (Reading 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... 100% 2021-05-17T21:34:28.8007227Z (Reading database ... 267393 files and directories currently installed.) 2021-05-17T21:34:28.8134009Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-17T21:34:28.8355115Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-17T21:34:29.0309162Z Selecting previously unselected package fonts-noto-mono. 2021-05-17T21:34:29.0550869Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-17T21:34:29.0560313Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-17T21:34:29.0908595Z Selecting previously unselected package fonts-urw-base35. 2021-05-17T21:34:29.1144441Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-17T21:34:29.1718516Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-17T21:34:29.5428571Z Selecting previously unselected package libgs9-common. 2021-05-17T21:34:29.5690679Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-05-17T21:34:29.5707617Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:34:29.6668895Z Selecting previously unselected package libijs-0.35:amd64. 2021-05-17T21:34:29.6902653Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-05-17T21:34:29.6923371Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-05-17T21:34:29.7227660Z Selecting previously unselected package libjbig2dec0:amd64. 2021-05-17T21:34:29.7457532Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-05-17T21:34:29.7467063Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-17T21:34:29.7828448Z Selecting previously unselected package libgs9:amd64. 2021-05-17T21:34:29.8083419Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-17T21:34:29.8092996Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:34:30.0667782Z Selecting previously unselected package ghostscript. 2021-05-17T21:34:30.0924614Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-17T21:34:30.0937437Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:34:30.1576525Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-17T21:34:30.1637730Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-17T21:34:30.1663544Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-17T21:34:30.2260022Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-17T21:34:30.2287340Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-17T21:34:30.2515819Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:34:30.2535864Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:34:30.2556614Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:34:30.2677581Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T21:34:30.3689851Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:30.3898337Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:33.3422432Z Reading package lists... 2021-05-17T21:34:33.4939787Z Building dependency tree... 2021-05-17T21:34:33.4960359Z Reading state information... 2021-05-17T21:34:33.6433205Z The following additional packages will be installed: 2021-05-17T21:34:33.6437171Z libudunits2-0 libudunits2-data 2021-05-17T21:34:33.6898538Z The following NEW packages will be installed: 2021-05-17T21:34:33.6901430Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-17T21:34:33.7119726Z 0 upgraded, 3 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:33.7120467Z Need to get 429 kB of archives. 2021-05-17T21:34:33.7121532Z After this operation, 1026 kB of additional disk space will be used. 2021-05-17T21:34:33.7123402Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-17T21:34:33.7162033Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-17T21:34:33.7172234Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-17T21:34:34.1164753Z Fetched 429 kB in 0s (15.8 MB/s) 2021-05-17T21:34:34.1508920Z Selecting previously unselected package libudunits2-data. 2021-05-17T21:34:34.1529655Z (Reading database ... 2021-05-17T21:34:34.1530226Z (Reading database ... 5% 2021-05-17T21:34:34.1530710Z (Reading database ... 10% 2021-05-17T21:34:34.1531178Z (Reading database ... 15% 2021-05-17T21:34:34.1531655Z (Reading database ... 20% 2021-05-17T21:34:34.1532125Z (Reading database ... 25% 2021-05-17T21:34:34.1532583Z (Reading database ... 30% 2021-05-17T21:34:34.1533048Z (Reading database ... 35% 2021-05-17T21:34:34.1533501Z (Reading database ... 40% 2021-05-17T21:34:34.1534167Z (Reading database ... 45% 2021-05-17T21:34:34.1534646Z (Reading database ... 50% 2021-05-17T21:34:34.1576167Z (Reading database ... 55% 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(2.2.26-5) ... 2021-05-17T21:34:34.3788001Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-17T21:34:34.4029956Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-17T21:34:34.4040541Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-17T21:34:34.4756375Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-17T21:34:34.4787738Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-17T21:34:34.4818722Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-17T21:34:34.4868577Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T21:34:34.5866600Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:36.5661086Z Reading package lists... 2021-05-17T21:34:36.7236758Z Building dependency tree... 2021-05-17T21:34:36.7257048Z Reading state information... 2021-05-17T21:34:36.9187028Z The following NEW packages will be installed: 2021-05-17T21:34:36.9192173Z libjq-dev 2021-05-17T21:34:36.9369185Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:36.9369923Z Need to get 11.2 kB of archives. 2021-05-17T21:34:36.9370635Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-17T21:34:36.9372583Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-17T21:34:37.3312729Z Fetched 11.2 kB in 0s (786 kB/s) 2021-05-17T21:34:37.3598574Z Selecting previously unselected package libjq-dev:amd64. 2021-05-17T21:34:37.3675296Z (Reading database ... 2021-05-17T21:34:37.3676070Z (Reading database ... 5% 2021-05-17T21:34:37.3676795Z (Reading database ... 10% 2021-05-17T21:34:37.3677549Z (Reading database ... 15% 2021-05-17T21:34:37.3678219Z (Reading database ... 20% 2021-05-17T21:34:37.3678928Z (Reading database ... 25% 2021-05-17T21:34:37.3679650Z (Reading database ... 30% 2021-05-17T21:34:37.3680301Z (Reading database ... 35% 2021-05-17T21:34:37.3681046Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-17T21:34:39.5034721Z Reading package lists... 2021-05-17T21:34:39.6633036Z Building dependency tree... 2021-05-17T21:34:39.6651121Z Reading state information... 2021-05-17T21:34:39.8593423Z The following NEW packages will be installed: 2021-05-17T21:34:39.8597054Z libmng2 2021-05-17T21:34:39.8773407Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:39.8774152Z Need to get 168 kB of archives. 2021-05-17T21:34:39.8775403Z After this operation, 571 kB of additional disk space will be used. 2021-05-17T21:34:39.8777215Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-17T21:34:40.2722758Z Fetched 168 kB in 0s (10.2 MB/s) 2021-05-17T21:34:40.3042922Z Selecting previously unselected package libmng2:amd64. 2021-05-17T21:34:40.3120229Z (Reading database ... 2021-05-17T21:34:40.3121268Z (Reading database ... 5% 2021-05-17T21:34:40.3121835Z (Reading database ... 10% 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2021-05-17T21:34:40.4288008Z (Reading database ... 267992 files and directories currently installed.) 2021-05-17T21:34:40.4420459Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-17T21:34:40.4439843Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-17T21:34:40.5148949Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-17T21:34:40.5192825Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:42.4851925Z Reading package lists... 2021-05-17T21:34:42.6556332Z Building dependency tree... 2021-05-17T21:34:42.6576043Z Reading state information... 2021-05-17T21:34:42.8894812Z E: Unable to locate package libmng1 2021-05-17T21:34:42.9511021Z Reading package lists... 2021-05-17T21:34:43.1200661Z Building dependency tree... 2021-05-17T21:34:43.1219629Z Reading state information... 2021-05-17T21:34:43.2392482Z E: Unable to locate package libapparmor-devel 2021-05-17T21:34:43.3001631Z Reading package lists... 2021-05-17T21:34:43.4704490Z Building dependency tree... 2021-05-17T21:34:43.4724559Z Reading state information... 2021-05-17T21:34:43.6316249Z The following additional packages will be installed: 2021-05-17T21:34:43.6319214Z libij-java 2021-05-17T21:34:43.6774736Z The following NEW packages will be installed: 2021-05-17T21:34:43.6784325Z imagej libij-java 2021-05-17T21:34:43.6999480Z 0 upgraded, 2 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:43.7000185Z Need to get 2328 kB of archives. 2021-05-17T21:34:43.7000897Z After this operation, 2498 kB of additional disk space will be used. 2021-05-17T21:34:43.7002650Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-17T21:34:43.7944267Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-17T21:34:44.1941670Z Fetched 2328 kB in 0s (20.3 MB/s) 2021-05-17T21:34:44.2235354Z Selecting previously unselected package libij-java. 2021-05-17T21:34:44.2309342Z (Reading 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lists... 2021-05-17T21:34:47.7150767Z Building dependency tree... 2021-05-17T21:34:47.7171983Z Reading state information... 2021-05-17T21:34:47.8702711Z Suggested packages: 2021-05-17T21:34:47.8704663Z bowtie2-examples 2021-05-17T21:34:47.9141088Z The following NEW packages will be installed: 2021-05-17T21:34:47.9150522Z bowtie2 2021-05-17T21:34:47.9397611Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:47.9398330Z Need to get 1324 kB of archives. 2021-05-17T21:34:47.9399049Z After this operation, 5630 kB of additional disk space will be used. 2021-05-17T21:34:47.9400833Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-17T21:34:48.3555845Z Fetched 1324 kB in 0s (33.3 MB/s) 2021-05-17T21:34:48.3855168Z Selecting previously unselected package bowtie2. 2021-05-17T21:34:48.3932048Z (Reading database ... 2021-05-17T21:34:48.3932569Z (Reading database ... 5% 2021-05-17T21:34:48.3933082Z (Reading database ... 10% 2021-05-17T21:34:48.3933564Z (Reading database ... 15% 2021-05-17T21:34:48.3934016Z (Reading database ... 20% 2021-05-17T21:34:48.3934502Z (Reading database ... 25% 2021-05-17T21:34:48.3934967Z (Reading database ... 30% 2021-05-17T21:34:48.3935420Z (Reading database ... 35% 2021-05-17T21:34:48.3935881Z (Reading database ... 40% 2021-05-17T21:34:48.3936344Z (Reading database ... 45% 2021-05-17T21:34:48.3936985Z (Reading database ... 50% 2021-05-17T21:34:48.3968861Z (Reading database ... 55% 2021-05-17T21:34:48.4018391Z (Reading database ... 60% 2021-05-17T21:34:48.4044017Z (Reading database ... 65% 2021-05-17T21:34:48.4171332Z (Reading database ... 70% 2021-05-17T21:34:48.4293620Z (Reading database ... 75% 2021-05-17T21:34:48.4319329Z (Reading database ... 80% 2021-05-17T21:34:48.4880933Z (Reading database ... 85% 2021-05-17T21:34:48.5057406Z (Reading database ... 90% 2021-05-17T21:34:48.5136645Z (Reading database ... 95% 2021-05-17T21:34:48.5137235Z (Reading database ... 100% 2021-05-17T21:34:48.5138059Z (Reading database ... 268021 files and directories currently installed.) 2021-05-17T21:34:48.5273296Z Preparing to unpack .../bowtie2_2.3.5.1-6build1_amd64.deb ... 2021-05-17T21:34:48.5284699Z Unpacking bowtie2 (2.3.5.1-6build1) ... 2021-05-17T21:34:48.7045618Z Setting up bowtie2 (2.3.5.1-6build1) ... 2021-05-17T21:34:48.7088825Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:51.4513256Z Reading package lists... 2021-05-17T21:34:51.6161578Z Building dependency tree... 2021-05-17T21:34:51.6179771Z Reading state information... 2021-05-17T21:34:51.8142451Z E: Unable to locate package install 2021-05-17T21:34:51.8143507Z E: Unable to locate package gdal 2021-05-17T21:34:51.8761218Z Reading package lists... 2021-05-17T21:34:52.0460847Z Building dependency tree... 2021-05-17T21:34:52.0479774Z Reading state information... 2021-05-17T21:34:52.0743366Z Package insighttoolkit4-python is not available, but is referred to by another package. 2021-05-17T21:34:52.0745088Z This may mean that the package is missing, has been obsoleted, or 2021-05-17T21:34:52.0746226Z is only available from another source 2021-05-17T21:34:52.0746808Z 2021-05-17T21:34:52.1714539Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-17T21:34:52.2325828Z Reading package lists... 2021-05-17T21:34:52.4021731Z Building dependency tree... 2021-05-17T21:34:52.4040826Z Reading state information... 2021-05-17T21:34:52.4293726Z Package libav-tools is not available, but is referred to by another package. 2021-05-17T21:34:52.4295429Z This may mean that the package is missing, has been obsoleted, or 2021-05-17T21:34:52.4296450Z is only available from another source 2021-05-17T21:34:52.4297406Z However the following packages replace it: 2021-05-17T21:34:52.4298179Z ffmpeg 2021-05-17T21:34:52.4298665Z 2021-05-17T21:34:52.5246912Z E: Package 'libav-tools' has no installation candidate 2021-05-17T21:34:52.5856794Z Reading package lists... 2021-05-17T21:34:52.7408155Z Building dependency tree... 2021-05-17T21:34:52.7426849Z Reading state information... 2021-05-17T21:34:52.8932816Z The following additional packages will be installed: 2021-05-17T21:34:52.8935273Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-17T21:34:52.8937256Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-17T21:34:52.8938559Z libssh2-1-dev 2021-05-17T21:34:52.8939817Z Suggested packages: 2021-05-17T21:34:52.8940907Z libgcrypt20-doc libmbedtls-doc 2021-05-17T21:34:52.9395232Z The following NEW packages will be installed: 2021-05-17T21:34:52.9397471Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-17T21:34:52.9399228Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-17T21:34:52.9401503Z libssh2-1-dev 2021-05-17T21:34:52.9577762Z 0 upgraded, 11 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:52.9578525Z Need to get 2667 kB of archives. 2021-05-17T21:34:52.9579246Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-17T21:34:52.9581063Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-17T21:34:52.9615762Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-17T21:34:52.9657079Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-17T21:34:52.9663267Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-17T21:34:52.9674201Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-17T21:34:52.9680025Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-17T21:34:52.9685061Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-17T21:34:52.9728090Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-17T21:34:52.9767855Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-17T21:34:52.9789661Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-17T21:34:52.9793043Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-17T21:34:53.3853709Z Fetched 2667 kB in 0s (60.1 MB/s) 2021-05-17T21:34:53.4150112Z Selecting previously unselected package libgpg-error-dev. 2021-05-17T21:34:53.4210587Z (Reading database ... 2021-05-17T21:34:53.4211135Z (Reading database ... 5% 2021-05-17T21:34:53.4211613Z (Reading database 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2021-05-17T21:34:53.5308622Z (Reading database ... 268047 files and directories currently installed.) 2021-05-17T21:34:53.5434793Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-17T21:34:53.5462969Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-17T21:34:53.5868817Z Selecting previously unselected package libgcrypt20-dev. 2021-05-17T21:34:53.6098356Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-17T21:34:53.6108393Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-17T21:34:53.6827958Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-17T21:34:53.7067266Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-17T21:34:53.7089384Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-17T21:34:53.7387815Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-17T21:34:53.7634138Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T21:34:53.7648821Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:34:53.8002837Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-17T21:34:53.8291196Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T21:34:53.8299889Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:34:53.8627850Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-17T21:34:53.8863208Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T21:34:53.8871557Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:34:53.9150296Z Selecting previously unselected package libgit2-28:amd64. 2021-05-17T21:34:53.9435604Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-17T21:34:53.9443161Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T21:34:54.0068177Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-17T21:34:54.0293764Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T21:34:54.0321750Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:34:54.0988323Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-17T21:34:54.1255196Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-17T21:34:54.1272189Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-17T21:34:54.1828330Z Selecting previously unselected package libhttp-parser-dev. 2021-05-17T21:34:54.2059093Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-17T21:34:54.2075305Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-17T21:34:54.2387872Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-17T21:34:54.2623050Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-17T21:34:54.2632617Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T21:34:54.3784426Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-17T21:34:54.3814753Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:34:54.3850576Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-17T21:34:54.3885879Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-17T21:34:54.3923674Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:34:54.3972584Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:34:54.4005623Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:34:54.4044837Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-17T21:34:54.4072271Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-17T21:34:54.4112519Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T21:34:54.4144066Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T21:34:54.4181962Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:58.8865303Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T21:34:58.9897510Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:00.9258418Z Reading package lists... 2021-05-17T21:35:01.1117134Z Building dependency tree... 2021-05-17T21:35:01.1136939Z Reading state information... 2021-05-17T21:35:01.3532435Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-17T21:35:01.3533924Z libtiff-dev set to manually installed. 2021-05-17T21:35:01.3534943Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:01.4136734Z Reading package lists... 2021-05-17T21:35:01.5685398Z Building dependency tree... 2021-05-17T21:35:01.5703390Z Reading state information... 2021-05-17T21:35:01.7894541Z unixodbc-dev is already the newest version (2.3.7). 2021-05-17T21:35:01.7895875Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:01.8504651Z Reading package lists... 2021-05-17T21:35:02.0201274Z Building dependency tree... 2021-05-17T21:35:02.0219689Z Reading state information... 2021-05-17T21:35:02.2111487Z The following NEW packages will be installed: 2021-05-17T21:35:02.2114709Z libsodium-dev 2021-05-17T21:35:02.2294113Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:02.2294856Z Need to get 169 kB of archives. 2021-05-17T21:35:02.2295547Z After this operation, 826 kB of additional disk space will be used. 2021-05-17T21:35:02.2297265Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-17T21:35:02.6193332Z Fetched 169 kB in 0s (8409 kB/s) 2021-05-17T21:35:02.6486393Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-17T21:35:02.6559369Z (Reading database ... 2021-05-17T21:35:02.6560335Z (Reading database ... 5% 2021-05-17T21:35:02.6561001Z (Reading database ... 10% 2021-05-17T21:35:02.6561672Z (Reading database ... 15% 2021-05-17T21:35:02.6562320Z (Reading database ... 20% 2021-05-17T21:35:02.6562944Z (Reading database ... 25% 2021-05-17T21:35:02.6563581Z (Reading database ... 30% 2021-05-17T21:35:02.6564215Z (Reading database ... 35% 2021-05-17T21:35:02.6564835Z (Reading database ... 40% 2021-05-17T21:35:02.6565468Z (Reading database ... 45% 2021-05-17T21:35:02.6566113Z (Reading database ... 50% 2021-05-17T21:35:02.6602534Z (Reading database ... 55% 2021-05-17T21:35:02.6646812Z (Reading database ... 60% 2021-05-17T21:35:02.6670174Z (Reading database ... 65% 2021-05-17T21:35:02.6785485Z (Reading database ... 70% 2021-05-17T21:35:02.6897489Z (Reading database ... 75% 2021-05-17T21:35:02.6924174Z (Reading database ... 80% 2021-05-17T21:35:02.7436039Z (Reading database ... 85% 2021-05-17T21:35:02.7594942Z (Reading database ... 90% 2021-05-17T21:35:02.7668739Z (Reading database ... 95% 2021-05-17T21:35:02.7669536Z (Reading database ... 100% 2021-05-17T21:35:02.7670521Z (Reading database ... 268550 files and directories currently installed.) 2021-05-17T21:35:02.7797620Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-17T21:35:02.7808863Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-17T21:35:02.8543731Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-17T21:35:04.7487928Z Reading package lists... 2021-05-17T21:35:04.9050979Z Building dependency tree... 2021-05-17T21:35:04.9069180Z Reading state information... 2021-05-17T21:35:05.0503481Z The following additional packages will be installed: 2021-05-17T21:35:05.0507037Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-17T21:35:05.0953199Z The following NEW packages will be installed: 2021-05-17T21:35:05.0961889Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-17T21:35:05.0964753Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-17T21:35:05.1147265Z 0 upgraded, 8 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:05.1148004Z Need to get 10.4 MB of archives. 2021-05-17T21:35:05.1148717Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-17T21:35:05.1151191Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-17T21:35:05.1261411Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-17T21:35:05.1417763Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-17T21:35:05.1540403Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-17T21:35:05.1632116Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-17T21:35:05.1737423Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-17T21:35:05.1853240Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-17T21:35:05.2276694Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-17T21:35:05.6196839Z Fetched 10.4 MB in 0s (81.2 MB/s) 2021-05-17T21:35:05.6477277Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-17T21:35:05.6548685Z (Reading database ... 2021-05-17T21:35:05.6549624Z (Reading database ... 5% 2021-05-17T21:35:05.6550174Z (Reading database ... 10% 2021-05-17T21:35:05.6550656Z (Reading database ... 15% 2021-05-17T21:35:05.6551159Z (Reading database ... 20% 2021-05-17T21:35:05.6551648Z (Reading database ... 25% 2021-05-17T21:35:05.6552108Z (Reading database ... 30% 2021-05-17T21:35:05.6552576Z (Reading database ... 35% 2021-05-17T21:35:05.6553050Z (Reading database ... 40% 2021-05-17T21:35:05.6553504Z (Reading database ... 45% 2021-05-17T21:35:05.6554158Z (Reading database 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.../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-17T21:35:06.2402267Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-17T21:35:06.2403448Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-17T21:35:06.2406148Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-17T21:35:06.2407793Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-17T21:35:06.2408626Z Selecting previously unselected package libtesseract4:amd64. 2021-05-17T21:35:06.2409661Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-17T21:35:06.2410642Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-17T21:35:06.3108836Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-17T21:35:06.3336987Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-17T21:35:06.3348409Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-17T21:35:06.4988755Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-17T21:35:06.5245356Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-17T21:35:06.5253036Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-17T21:35:06.6867965Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-17T21:35:06.7109624Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-17T21:35:06.7121811Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-17T21:35:07.0668086Z Selecting previously unselected package tesseract-ocr. 2021-05-17T21:35:07.0887409Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-17T21:35:07.0896734Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-17T21:35:07.1714080Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-17T21:35:07.1749721Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-17T21:35:07.1779682Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-17T21:35:07.1808285Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-17T21:35:07.1831872Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-17T21:35:07.1863047Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-17T21:35:07.1896994Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-17T21:35:07.1918028Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-17T21:35:07.1945383Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:35:09.9070808Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:11.8108905Z Reading package lists... 2021-05-17T21:35:11.9580782Z Building dependency tree... 2021-05-17T21:35:11.9598707Z Reading state information... 2021-05-17T21:35:12.1710520Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-17T21:35:12.1711847Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:12.2316752Z Reading package lists... 2021-05-17T21:35:12.3870223Z Building dependency tree... 2021-05-17T21:35:12.3890153Z Reading state information... 2021-05-17T21:35:12.5331855Z The following additional packages will be installed: 2021-05-17T21:35:12.5333766Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-17T21:35:12.5335085Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-17T21:35:12.5338985Z Suggested packages: 2021-05-17T21:35:12.5339878Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-17T21:35:12.5788444Z The following NEW packages will be installed: 2021-05-17T21:35:12.5790819Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-17T21:35:12.5793750Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-17T21:35:12.5984551Z 0 upgraded, 10 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:12.5985483Z Need to get 1459 kB of archives. 2021-05-17T21:35:12.5986326Z After this operation, 7754 kB of additional disk space will be used. 2021-05-17T21:35:12.5988094Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-17T21:35:12.6016216Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-17T21:35:12.6022349Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-17T21:35:12.6030088Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-17T21:35:12.6045388Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-17T21:35:12.6047374Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-17T21:35:12.6064963Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-17T21:35:12.6121105Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-17T21:35:12.6154461Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-17T21:35:12.6159695Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-17T21:35:13.0085229Z Fetched 1459 kB in 0s (40.2 MB/s) 2021-05-17T21:35:13.0379045Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-17T21:35:13.0452221Z (Reading database ... 2021-05-17T21:35:13.0453023Z (Reading database ... 5% 2021-05-17T21:35:13.0453698Z (Reading database ... 10% 2021-05-17T21:35:13.0454357Z (Reading database ... 15% 2021-05-17T21:35:13.0454985Z (Reading database ... 20% 2021-05-17T21:35:13.0455631Z (Reading database ... 25% 2021-05-17T21:35:13.0456291Z (Reading database ... 30% 2021-05-17T21:35:13.0456917Z (Reading database ... 35% 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2021-05-17T21:35:13.2028181Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-17T21:35:13.2263971Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:35:13.2278852Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.2539961Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-17T21:35:13.2818956Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:35:13.2829175Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.3148192Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-17T21:35:13.3389699Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:35:13.3398509Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.3709045Z Selecting previously unselected package comerr-dev:amd64. 2021-05-17T21:35:13.3941424Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-17T21:35:13.3972915Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-17T21:35:13.4228139Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-17T21:35:13.4506380Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:35:13.4514434Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.4868584Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-17T21:35:13.5109368Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-17T21:35:13.5121331Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-17T21:35:13.5828427Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-17T21:35:13.6059010Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T21:35:13.6067596Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-17T21:35:13.6459627Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-17T21:35:13.6745676Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:35:13.6754556Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.6989766Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-17T21:35:13.7274995Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-17T21:35:13.7282648Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-17T21:35:13.8403184Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-17T21:35:13.8435041Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.8464563Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-17T21:35:13.8496321Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-17T21:35:13.8529794Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.8553434Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.8577934Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.8604053Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.8628322Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:35:13.8651248Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-17T21:35:13.8680556Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:13.8879770Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:35:16.8141607Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T21:35:18.8257435Z Reading package lists... 2021-05-17T21:35:18.9728654Z Building dependency tree... 2021-05-17T21:35:18.9747686Z Reading state information... 2021-05-17T21:35:19.1234021Z E: Unable to locate package udunits 2021-05-17T21:35:19.1842846Z Reading package lists... 2021-05-17T21:35:19.3332875Z Building dependency tree... 2021-05-17T21:35:19.3351086Z Reading state information... 2021-05-17T21:35:19.4772485Z The following additional packages will be installed: 2021-05-17T21:35:19.4774980Z libwebpdemux2 2021-05-17T21:35:19.5213116Z The following NEW packages will be installed: 2021-05-17T21:35:19.5215071Z libwebp-dev libwebpdemux2 2021-05-17T21:35:19.5477373Z 0 upgraded, 2 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:19.5478494Z Need to get 277 kB of archives. 2021-05-17T21:35:19.5479682Z After this operation, 965 kB of additional disk space will be used. 2021-05-17T21:35:19.5481564Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-17T21:35:19.5495150Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-17T21:35:19.9429363Z Fetched 277 kB in 0s (9372 kB/s) 2021-05-17T21:35:19.9737241Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-17T21:35:19.9812019Z (Reading database ... 2021-05-17T21:35:19.9812746Z (Reading database ... 5% 2021-05-17T21:35:19.9813398Z (Reading 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... 100% 2021-05-17T21:35:20.1015689Z (Reading database ... 269145 files and directories currently installed.) 2021-05-17T21:35:20.1153784Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-17T21:35:20.1171142Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-17T21:35:20.1468391Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-17T21:35:20.1685353Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-17T21:35:20.1696283Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-17T21:35:20.2489173Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-17T21:35:20.2523008Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-17T21:35:20.2562448Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:22.1760746Z Reading package lists... 2021-05-17T21:35:22.3211836Z Building dependency tree... 2021-05-17T21:35:22.3229977Z Reading state information... 2021-05-17T21:35:22.4649257Z The following additional packages will be installed: 2021-05-17T21:35:22.4653992Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-17T21:35:22.4658167Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-17T21:35:22.4659519Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-17T21:35:22.4660237Z Suggested packages: 2021-05-17T21:35:22.4661119Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-17T21:35:22.4661801Z Recommended packages: 2021-05-17T21:35:22.4662280Z cargo 2021-05-17T21:35:22.5128205Z The following NEW packages will be installed: 2021-05-17T21:35:22.5131480Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-17T21:35:22.5133110Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-17T21:35:22.5134525Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-17T21:35:22.5389523Z 0 upgraded, 13 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:22.5391189Z Need to get 108 MB of archives. 2021-05-17T21:35:22.5392402Z After this operation, 501 MB of additional disk space will be used. 2021-05-17T21:35:22.5394803Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-17T21:35:22.5462198Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-17T21:35:22.5470716Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-17T21:35:22.5485202Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-17T21:35:22.5548383Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-17T21:35:22.5570007Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-17T21:35:22.5590181Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-17T21:35:22.6917918Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-17T21:35:24.4963355Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-17T21:35:24.8624649Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-17T21:35:24.8798918Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-17T21:35:24.9464469Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-17T21:35:25.0662766Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-17T21:35:25.4639811Z Fetched 108 MB in 3s (42.3 MB/s) 2021-05-17T21:35:25.4958615Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-17T21:35:25.5038793Z (Reading database ... 2021-05-17T21:35:25.5039382Z (Reading database ... 5% 2021-05-17T21:35:25.5039852Z (Reading database ... 10% 2021-05-17T21:35:25.5040328Z (Reading database ... 15% 2021-05-17T21:35:25.5040801Z (Reading database ... 20% 2021-05-17T21:35:25.5041255Z (Reading database ... 25% 2021-05-17T21:35:25.5041729Z (Reading database ... 30% 2021-05-17T21:35:25.5042197Z (Reading database ... 35% 2021-05-17T21:35:25.5044164Z (Reading database ... 40% 2021-05-17T21:35:25.5044821Z (Reading database ... 45% 2021-05-17T21:35:25.5045457Z (Reading database ... 50% 2021-05-17T21:35:25.5077983Z (Reading database ... 55% 2021-05-17T21:35:25.5121090Z (Reading database ... 60% 2021-05-17T21:35:25.5149218Z (Reading database ... 65% 2021-05-17T21:35:25.5265004Z (Reading database ... 70% 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.../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-05-17T21:35:25.7504622Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-17T21:35:25.7948657Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-05-17T21:35:25.8211504Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-05-17T21:35:25.8227882Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-17T21:35:25.8987833Z Selecting previously unselected package libsource-highlight4v5. 2021-05-17T21:35:25.9228592Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-05-17T21:35:25.9243245Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-17T21:35:25.9713264Z Selecting previously unselected package libxxhash0:amd64. 2021-05-17T21:35:26.0007244Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-05-17T21:35:26.0556559Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-05-17T21:35:26.0839897Z Selecting previously unselected package gdb. 2021-05-17T21:35:26.1132492Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-05-17T21:35:26.1143647Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-17T21:35:26.4188623Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-05-17T21:35:26.4443648Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T21:35:26.4458251Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:35:32.0106534Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-05-17T21:35:32.0395991Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T21:35:32.0404281Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:35:34.7668144Z Selecting previously unselected package rustc. 2021-05-17T21:35:34.7957874Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T21:35:34.7980091Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:35:34.9708598Z Selecting previously unselected package cargo. 2021-05-17T21:35:34.9997741Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T21:35:35.0006246Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-17T21:35:35.3044173Z Selecting previously unselected package libc6-dbg:amd64. 2021-05-17T21:35:35.3336168Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ... 2021-05-17T21:35:35.3347523Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-17T21:35:36.4108684Z Selecting previously unselected package rust-gdb. 2021-05-17T21:35:36.4336056Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ... 2021-05-17T21:35:36.4342690Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:35:36.4920221Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:35:36.4945399Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-17T21:35:36.4965564Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-17T21:35:36.4985131Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:35:36.5004309Z Setting up libipt2 (2.0.1-1) ... 2021-05-17T21:35:36.5024852Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-17T21:35:36.5047002Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-17T21:35:36.5067112Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:35:36.5086442Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-17T21:35:36.5109758Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-17T21:35:36.5132255Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-17T21:35:36.5152797Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-17T21:35:36.5178219Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:35:36.5201113Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:36.5389934Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:35:39.5633449Z Reading package lists... 2021-05-17T21:35:39.7109808Z Building dependency tree... 2021-05-17T21:35:39.7129727Z Reading state information... 2021-05-17T21:35:39.8648665Z The following additional packages will be installed: 2021-05-17T21:35:39.8651244Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-17T21:35:39.8653088Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-17T21:35:39.8655299Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-17T21:35:39.8656961Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-17T21:35:39.8658689Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-17T21:35:39.8661035Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-17T21:35:39.8662602Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-17T21:35:39.8664238Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-17T21:35:39.8665913Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-17T21:35:39.8667958Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-17T21:35:39.8669618Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-17T21:35:39.8671275Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-17T21:35:39.8673006Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-17T21:35:39.8674904Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-17T21:35:39.8676739Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-17T21:35:39.8678486Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-17T21:35:39.8680220Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-17T21:35:39.8682026Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-17T21:35:39.8684935Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-17T21:35:39.8687226Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-17T21:35:39.8689450Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-17T21:35:39.8690825Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-17T21:35:39.8692104Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-17T21:35:39.8694270Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-17T21:35:39.8695316Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-17T21:35:39.8696637Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-17T21:35:39.8697904Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-17T21:35:39.8699214Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-17T21:35:39.8700537Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-17T21:35:39.8701751Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-17T21:35:39.8702926Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-17T21:35:39.8704068Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-17T21:35:39.8705286Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-17T21:35:39.8706668Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-17T21:35:39.8708039Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-17T21:35:39.8709394Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-17T21:35:39.8710674Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-17T21:35:39.8711906Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-17T21:35:39.8713107Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-17T21:35:39.8714410Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-17T21:35:39.8715719Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-17T21:35:39.8716918Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-17T21:35:39.8718139Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-17T21:35:39.8719556Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-17T21:35:39.8721229Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-17T21:35:39.8722513Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-17T21:35:39.8723756Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-17T21:35:39.8725124Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-17T21:35:39.8726272Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-17T21:35:39.8726942Z Suggested packages: 2021-05-17T21:35:39.8727896Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-17T21:35:39.8729052Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-17T21:35:39.8730395Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-17T21:35:39.8731722Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-17T21:35:39.8732848Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-17T21:35:39.8734076Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-17T21:35:39.8735374Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-17T21:35:39.8736662Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-17T21:35:39.8737888Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-17T21:35:39.8739135Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-17T21:35:39.8740505Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-17T21:35:39.8741897Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-17T21:35:39.8743178Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-17T21:35:39.8744138Z wpagui libengine-pkcs11-openssl 2021-05-17T21:35:39.9526330Z The following NEW packages will be installed: 2021-05-17T21:35:39.9530962Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-17T21:35:39.9534053Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-17T21:35:39.9537291Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-17T21:35:39.9540178Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-17T21:35:39.9542767Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-17T21:35:39.9545156Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-17T21:35:39.9546411Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-17T21:35:39.9549917Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-17T21:35:39.9552467Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-17T21:35:39.9555081Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-17T21:35:39.9557782Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-17T21:35:39.9560478Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-17T21:35:39.9561876Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-17T21:35:39.9563371Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-17T21:35:39.9566134Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-17T21:35:39.9567537Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-17T21:35:39.9568836Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-17T21:35:39.9570165Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-17T21:35:39.9571555Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-17T21:35:39.9572661Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-17T21:35:39.9573748Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-17T21:35:39.9575202Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-17T21:35:39.9577427Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-17T21:35:39.9578488Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-17T21:35:39.9579546Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-17T21:35:39.9580855Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-17T21:35:39.9627372Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-17T21:35:39.9628748Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-17T21:35:39.9630277Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-17T21:35:39.9631530Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-17T21:35:39.9641049Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-17T21:35:39.9642348Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-17T21:35:39.9643599Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-17T21:35:39.9644857Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-17T21:35:39.9646331Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-17T21:35:39.9647715Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-17T21:35:39.9648991Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-17T21:35:39.9650235Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-17T21:35:39.9651456Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-17T21:35:39.9652748Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-17T21:35:39.9654066Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-17T21:35:39.9655300Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-17T21:35:39.9656522Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-17T21:35:39.9657951Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-17T21:35:39.9659434Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-17T21:35:39.9660731Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-17T21:35:39.9661986Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-17T21:35:39.9663348Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-17T21:35:39.9664517Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-17T21:35:39.9961629Z 0 upgraded, 214 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:39.9962409Z Need to get 183 MB of archives. 2021-05-17T21:35:39.9963756Z After this operation, 776 MB of additional disk space will be used. 2021-05-17T21:35:39.9965745Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-17T21:35:39.9990478Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-17T21:35:40.0416985Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-17T21:35:40.0431936Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-17T21:35:40.0440678Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-17T21:35:40.0448183Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-17T21:35:40.0454174Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-17T21:35:40.0470586Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-17T21:35:40.0477589Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-17T21:35:40.0486867Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-17T21:35:40.0505569Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-17T21:35:40.0524538Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-17T21:35:40.0584775Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-17T21:35:40.0589970Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-17T21:35:40.0594239Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-17T21:35:40.0597814Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-17T21:35:40.0617419Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-17T21:35:40.0621466Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-17T21:35:40.0625269Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-17T21:35:40.0628917Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-17T21:35:40.0632523Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-17T21:35:40.0636315Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-17T21:35:40.0639962Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-17T21:35:40.1326370Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-17T21:35:40.1517931Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-17T21:35:40.1533115Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-17T21:35:40.1551481Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4 [735 kB] 2021-05-17T21:35:40.1614457Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-17T21:35:40.1619749Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-17T21:35:40.1639305Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-17T21:35:40.1658538Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-17T21:35:40.1776583Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-17T21:35:40.1884873Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-17T21:35:40.1896627Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-17T21:35:40.1903947Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-17T21:35:40.1910518Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-17T21:35:40.7383777Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-17T21:35:40.7389600Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-17T21:35:40.7484852Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-17T21:35:40.7510862Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-17T21:35:40.7528092Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-17T21:35:40.7539968Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-17T21:35:40.7546767Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-17T21:35:40.7564244Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-17T21:35:40.7574648Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-17T21:35:40.7590106Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-17T21:35:40.7603605Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-17T21:35:40.7643265Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-17T21:35:40.7652661Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-17T21:35:40.7691185Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-17T21:35:40.7701368Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-17T21:35:40.7710865Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-17T21:35:40.7716808Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-17T21:35:40.7729101Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-17T21:35:40.7772013Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-17T21:35:40.7780088Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-17T21:35:40.8430578Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-17T21:35:40.8578926Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-17T21:35:40.8586494Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-17T21:35:40.8611462Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-17T21:35:40.8614273Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-17T21:35:40.8620495Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-17T21:35:40.8626187Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-17T21:35:40.8640874Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-17T21:35:40.8650135Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-17T21:35:40.8740664Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-17T21:35:40.8756648Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-17T21:35:40.8775225Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-17T21:35:40.8948299Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-17T21:35:40.9020639Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-17T21:35:40.9461703Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-17T21:35:40.9468195Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-17T21:35:40.9475110Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-17T21:35:40.9479788Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-17T21:35:40.9491446Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-17T21:35:40.9517105Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-17T21:35:40.9524470Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-17T21:35:41.2513981Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-17T21:35:41.2518898Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-17T21:35:41.2524121Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-17T21:35:41.2770478Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-17T21:35:41.2778025Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-17T21:35:41.2791549Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-17T21:35:41.2848468Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-17T21:35:41.3283619Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-17T21:35:41.3562018Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-17T21:35:41.3571269Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-17T21:35:41.3577656Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-17T21:35:41.3584980Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-17T21:35:41.3653056Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-17T21:35:41.3656284Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-17T21:35:41.3672377Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-17T21:35:41.3685179Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-17T21:35:41.3709320Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-17T21:35:41.3726087Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-17T21:35:41.3751778Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-17T21:35:41.4050351Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-17T21:35:41.4105338Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-17T21:35:41.4132049Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-17T21:35:41.4137055Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-17T21:35:41.4160574Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-17T21:35:41.4202151Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-17T21:35:41.4281569Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-17T21:35:41.4310615Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-17T21:35:41.4331865Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-17T21:35:41.4534851Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-17T21:35:41.4553018Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-17T21:35:42.3987214Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-17T21:35:42.4000962Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-17T21:35:42.4011331Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-17T21:35:42.4472122Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-17T21:35:42.6623765Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-17T21:35:42.6632376Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-17T21:35:42.6643747Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4 [619 kB] 2021-05-17T21:35:42.6726534Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-17T21:35:42.6753085Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-17T21:35:42.7774145Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-17T21:35:42.8055913Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-17T21:35:42.8092194Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-17T21:35:42.8097663Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-17T21:35:42.8122220Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-17T21:35:42.8188101Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-17T21:35:42.8225717Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-17T21:35:42.8240719Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-17T21:35:42.8246830Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-17T21:35:42.8276215Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-17T21:35:42.8293933Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-17T21:35:42.8299174Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-17T21:35:42.8304942Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-17T21:35:42.8317018Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-17T21:35:42.8336046Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-17T21:35:42.8356629Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-17T21:35:42.8397500Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-17T21:35:42.8791402Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-17T21:35:42.8823503Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-17T21:35:42.8839250Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-17T21:35:42.8879559Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-17T21:35:42.9111415Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-17T21:35:42.9158093Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-17T21:35:42.9192663Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-17T21:35:42.9210055Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-17T21:35:42.9265833Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-17T21:35:42.9290289Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-17T21:35:42.9308377Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-17T21:35:42.9343188Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-17T21:35:42.9375082Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-17T21:35:42.9380747Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-17T21:35:42.9447143Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-17T21:35:42.9748906Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-17T21:35:43.0712778Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-17T21:35:43.0750023Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-17T21:35:43.0913022Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-17T21:35:43.0964844Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-17T21:35:43.0985212Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-17T21:35:43.1111674Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-17T21:35:43.1130484Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-17T21:35:43.1999049Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-17T21:35:43.2195528Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-17T21:35:43.2579164Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-17T21:35:43.3441940Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-17T21:35:43.3524437Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-17T21:35:43.3645816Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-17T21:35:43.3664714Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-17T21:35:43.3797594Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-17T21:35:43.3805240Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-17T21:35:43.3871568Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-17T21:35:43.3877438Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-17T21:35:43.4085078Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-17T21:35:43.4223416Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-17T21:35:43.5417287Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-17T21:35:43.5436961Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-17T21:35:43.5464144Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-17T21:35:43.5478688Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-17T21:35:43.5495672Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-17T21:35:43.5504814Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-17T21:35:43.5617013Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-17T21:35:43.5625119Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-17T21:35:43.5667579Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-17T21:35:43.5675598Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-17T21:35:43.5688419Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-17T21:35:43.5711573Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-17T21:35:43.5732571Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-17T21:35:43.6477575Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-17T21:35:43.6500436Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-17T21:35:43.7969340Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-17T21:35:43.7993502Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-17T21:35:43.8009149Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-17T21:35:43.8133519Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-17T21:35:43.8144238Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-17T21:35:43.8187575Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.3 [363 kB] 2021-05-17T21:35:43.8301068Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-17T21:35:43.8312817Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-17T21:35:43.8820057Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-17T21:35:43.8856297Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-17T21:35:43.8891406Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-17T21:35:43.9585406Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-17T21:35:43.9662802Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-17T21:35:43.9697176Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-17T21:35:43.9715243Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-17T21:35:43.9758410Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-17T21:35:44.0454696Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-17T21:35:44.3011122Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-17T21:35:44.3046461Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-17T21:35:44.3125185Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-17T21:35:44.6371108Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-17T21:35:44.6799338Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-17T21:35:44.6845860Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-17T21:35:44.6859780Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-17T21:35:44.6912652Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-17T21:35:44.6926804Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-17T21:35:44.7050364Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-17T21:35:44.7157510Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-17T21:35:44.7165904Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-17T21:35:44.7170858Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-17T21:35:46.2463172Z Fetched 183 MB in 5s (38.5 MB/s) 2021-05-17T21:35:46.2472700Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-17T21:35:46.2473892Z (Reading database ... 2021-05-17T21:35:46.2474494Z (Reading database ... 5% 2021-05-17T21:35:46.2475082Z (Reading database ... 10% 2021-05-17T21:35:46.2475663Z (Reading database ... 15% 2021-05-17T21:35:46.2476268Z (Reading database ... 20% 2021-05-17T21:35:46.2476855Z (Reading database ... 25% 2021-05-17T21:35:46.2477440Z (Reading database ... 30% 2021-05-17T21:35:46.2478001Z (Reading database ... 35% 2021-05-17T21:35:46.2478576Z (Reading database ... 40% 2021-05-17T21:35:46.2479131Z (Reading database ... 45% 2021-05-17T21:35:46.2479699Z (Reading database ... 50% 2021-05-17T21:35:46.2480268Z (Reading database ... 55% 2021-05-17T21:35:46.2480846Z (Reading database ... 60% 2021-05-17T21:35:46.2481408Z (Reading database ... 65% 2021-05-17T21:35:46.2481984Z (Reading database ... 70% 2021-05-17T21:35:46.2482548Z (Reading database ... 75% 2021-05-17T21:35:46.2483116Z (Reading database ... 80% 2021-05-17T21:35:46.2483683Z (Reading database ... 85% 2021-05-17T21:35:46.2484252Z (Reading database ... 90% 2021-05-17T21:35:46.2484809Z (Reading database ... 95% 2021-05-17T21:35:46.2485379Z (Reading database ... 100% 2021-05-17T21:35:46.2486202Z (Reading database ... 269928 files and directories currently installed.) 2021-05-17T21:35:46.2487621Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-05-17T21:35:46.2488878Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-05-17T21:35:46.2489906Z Selecting previously unselected package libqt5core5a:amd64. 2021-05-17T21:35:46.2491111Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-17T21:35:46.2492222Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:35:46.2493324Z Selecting previously unselected package libegl-mesa0:amd64. 2021-05-17T21:35:46.2494551Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-17T21:35:46.2495670Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T21:35:46.2496585Z Selecting previously unselected package libegl1:amd64. 2021-05-17T21:35:46.2732017Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T21:35:46.2745361Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T21:35:46.3107284Z Selecting previously unselected package libevdev2:amd64. 2021-05-17T21:35:46.3326220Z Preparing to unpack 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2021-05-17T21:36:18.4461710Z Setting up libkmldom1:amd64 (1.3.0-8build1) ... 2021-05-17T21:36:18.4485512Z Setting up libspatialite7:amd64 (4.3.0a-6build1) ... 2021-05-17T21:36:18.4512209Z Setting up libgcr-ui-3-1:amd64 (3.36.0-2build1) ... 2021-05-17T21:36:18.4538121Z Setting up python3-matplotlib (3.1.2-1ubuntu4) ... 2021-05-17T21:36:19.3506152Z Setting up libkmlengine1:amd64 (1.3.0-8build1) ... 2021-05-17T21:36:19.3534982Z Setting up libqt5keychain1:amd64 (0.10.0-1build1) ... 2021-05-17T21:36:19.3565828Z Setting up libsqlite3-mod-spatialite:amd64 (4.3.0a-6build1) ... 2021-05-17T21:36:19.3596457Z Setting up qdoc-qt5 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:19.3622875Z Setting up libqt5positioning5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:19.3644499Z Setting up proj-bin (6.3.1-1) ... 2021-05-17T21:36:19.3666400Z Setting up libqca-qt5-2-plugins:amd64 (2.2.1-2build1) ... 2021-05-17T21:36:19.3693476Z Setting up libgstreamer-plugins-base1.0-0:amd64 (1.16.2-4) ... 2021-05-17T21:36:19.3716382Z Setting up geoclue-2.0 (2.5.6-0ubuntu1) ... 2021-05-17T21:36:19.7787666Z geoclue.service is a disabled or a static unit, not starting it. 2021-05-17T21:36:19.7806093Z Setting up libqt5serialport5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:19.7824342Z Setting up python3-nbformat (5.0.4-1) ... 2021-05-17T21:36:19.9373646Z Setting up libmbim-proxy (1.22.0-2) ... 2021-05-17T21:36:19.9394157Z Setting up python3-pyproj (2.5.0+ds-1) ... 2021-05-17T21:36:20.0955232Z Setting up libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:20.0978015Z Setting up python3-bs4 (4.8.2-1) ... 2021-05-17T21:36:20.2817529Z Setting up libgeotiff5:amd64 (1.5.1-2) ... 2021-05-17T21:36:20.2849935Z Setting up gcr (3.36.0-2build1) ... 2021-05-17T21:36:20.2880054Z Setting up libqt5sql5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:20.2903623Z Setting up wpasupplicant (2:2.9-1ubuntu4.3) ... 2021-05-17T21:36:20.4147176Z Created symlink /etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-17T21:36:20.4165798Z Created symlink /etc/systemd/system/multi-user.target.wants/wpa_supplicant.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-17T21:36:20.9234125Z Setting up python3-pil:amd64 (7.0.0-4ubuntu0.3) ... 2021-05-17T21:36:21.1822840Z Setting up libqt5xml5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:21.1859416Z Setting up gstreamer1.0-plugins-base:amd64 (1.16.2-4) ... 2021-05-17T21:36:21.1889908Z Setting up libqt5qml5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:21.1922375Z Setting up qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:21.1944297Z Setting up qtattributionsscanner-qt5 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:21.1971928Z Setting up libqt5webchannel5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:21.2000645Z Setting up python3-plotly (4.4.1+dfsg-1) ... 2021-05-17T21:36:21.3484294Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:21.3486312Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-17T21:36:21.3487839Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:21.3489260Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-17T21:36:21.3880533Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:21.3881978Z if direction is "increasing": 2021-05-17T21:36:21.3883557Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:21.3884666Z elif direction is "decreasing": 2021-05-17T21:36:21.4048832Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:21.4050224Z if direction is "increasing": 2021-05-17T21:36:21.4051684Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:21.4052767Z elif direction is "decreasing": 2021-05-17T21:36:22.2780451Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:22.2782180Z if props["offset_coordinates"] is "data": 2021-05-17T21:36:22.2784054Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-17T21:36:22.2785387Z if props["coordinates"] is not "data": 2021-05-17T21:36:22.9985183Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-17T21:36:23.5909697Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-17T21:36:23.5912357Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-17T21:36:23.5914552Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-17T21:36:24.6976755Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-17T21:36:24.7013795Z First installation detected... 2021-05-17T21:36:24.7014903Z Checking NSS setup... 2021-05-17T21:36:24.7055284Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-17T21:36:24.7081153Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:24.7109094Z Setting up python3-owslib (0.19.1-1) ... 2021-05-17T21:36:24.9746203Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-17T21:36:24.9774696Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-17T21:36:24.9798136Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-17T21:36:24.9827893Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-17T21:36:24.9852932Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-17T21:36:24.9879481Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-17T21:36:24.9909373Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-17T21:36:24.9934364Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-17T21:36:24.9964365Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-17T21:36:25.1734321Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-17T21:36:25.1761782Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-17T21:36:25.1786909Z Setting up grass-core (7.8.2-1build3) ... 2021-05-17T21:36:25.5012137Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:25.5014130Z if value is '': 2021-05-17T21:36:25.5950682Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:25.5951798Z if do_profiling is "True" or do_profiling is "1": 2021-05-17T21:36:25.5952928Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:25.5953936Z if do_profiling is "True" or do_profiling is "1": 2021-05-17T21:36:25.5955054Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-17T21:36:25.5958883Z if driver_string is not None and driver_string is not "": 2021-05-17T21:36:25.6373067Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:25.6374272Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-17T21:36:25.6375540Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:36:25.6376669Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-17T21:36:25.6979099Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-17T21:36:25.7013876Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:25.7098165Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-17T21:36:25.7132515Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:25.7153686Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:25.7307307Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:25.7331476Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:25.7354386Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:25.7374345Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:25.7397988Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:25.7429437Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-17T21:36:25.8270472Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:25.8290831Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:25.8309841Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:25.8327590Z Setting up modemmanager (1.12.8-1) ... 2021-05-17T21:36:25.9550314Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-17T21:36:25.9553440Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-17T21:36:26.4884921Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:26.4919153Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:26.4948967Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-17T21:36:26.4971435Z Setting up libqt5svg5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:26.5003043Z Setting up libqt53drender5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:26.5023578Z Setting up qhelpgenerator-qt5 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:26.5057682Z Setting up libqwt-qt5-6 (6.1.4-1.1build1) ... 2021-05-17T21:36:26.5080849Z Setting up libqscintilla2-qt5-15 (2.11.2+dfsg-6) ... 2021-05-17T21:36:26.5104635Z Setting up libqt5webkit5:amd64 (5.212.0~alpha4-1ubuntu2) ... 2021-05-17T21:36:26.5129482Z Setting up libqt5designercomponents5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:26.5157110Z Setting up libqt5quickwidgets5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:36:26.5196388Z Setting up libqgis-core3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:26.5225195Z Setting up libqt53dquickscene2d5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:26.5253798Z Setting up libqgis-gui3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:26.5288123Z Setting up libqgis-analysis3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:26.5316440Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-17T21:36:26.5348069Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-17T21:36:26.5380773Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:26.5407106Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:26.5445514Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-17T21:36:26.6998559Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-17T21:36:26.7021474Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:26.7043941Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:26.7074763Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.2435279Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:57.2467551Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-17T21:36:57.2495127Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.2526099Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:57.2550627Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.2588111Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.2608468Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:36:57.2628959Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.4011020Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.4036533Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-17T21:36:57.4084876Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.4107772Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-17T21:36:57.4132425Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.5719514Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.5754506Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.5803717Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:36:57.5918218Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-17T21:36:57.6111194Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-17T21:36:58.5663297Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T21:36:58.5829858Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-17T21:36:58.6058430Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-17T21:36:58.6205641Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-17T21:36:58.8175970Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:36:58.8458378Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-17T21:36:59.1033498Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:37:09.4387191Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-17T21:37:09.4573895Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-17T21:37:11.3439289Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-17T21:37:11.3439820Z with: 2021-05-17T21:37:11.3440259Z github_slug: neuroconductor/aal 2021-05-17T21:37:11.3440668Z env: 2021-05-17T21:37:11.3441091Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:37:11.3441546Z TIC_DEPLOY_KEY: 2021-05-17T21:37:11.3442320Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:37:11.3443953Z GITHUB_PAT: *** 2021-05-17T21:37:11.3444737Z COVERALLS_TOKEN: *** 2021-05-17T21:37:11.3445202Z continue-on-error: true 2021-05-17T21:37:11.3445660Z VDIFFR_RUN_TESTS: 2021-05-17T21:37:11.3446124Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:37:11.3446551Z TZ: UTC 2021-05-17T21:37:11.3446926Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:37:11.3447311Z NOT_CRAN: true 2021-05-17T21:37:11.3447670Z ##[endgroup] 2021-05-17T21:37:11.3758936Z repo slug is: neuroconductor/aal 2021-05-17T21:37:11.3878809Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-17T21:37:11.3879351Z env: 2021-05-17T21:37:11.3879776Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:37:11.3880215Z TIC_DEPLOY_KEY: 2021-05-17T21:37:11.3880999Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:37:11.3882251Z GITHUB_PAT: *** 2021-05-17T21:37:11.3883034Z COVERALLS_TOKEN: *** 2021-05-17T21:37:11.3883498Z continue-on-error: true 2021-05-17T21:37:11.3883953Z VDIFFR_RUN_TESTS: 2021-05-17T21:37:11.3884411Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:37:11.3884852Z TZ: UTC 2021-05-17T21:37:11.3885222Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:37:11.3885614Z NOT_CRAN: true 2021-05-17T21:37:11.3885970Z ##[endgroup] 2021-05-17T21:37:11.5747537Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-17T21:37:11.5748105Z with: 2021-05-17T21:37:11.5748451Z repo_name: aal 2021-05-17T21:37:11.5748832Z repo_version: 0.1.1 2021-05-17T21:37:11.5749196Z runner_os: Linux 2021-05-17T21:37:11.5749558Z R_version: 4.1 2021-05-17T21:37:11.5749873Z env: 2021-05-17T21:37:11.5750292Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:37:11.5750755Z TIC_DEPLOY_KEY: 2021-05-17T21:37:11.5751523Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:37:11.5753185Z GITHUB_PAT: *** 2021-05-17T21:37:11.5753975Z COVERALLS_TOKEN: *** 2021-05-17T21:37:11.5754438Z continue-on-error: true 2021-05-17T21:37:11.5754897Z VDIFFR_RUN_TESTS: 2021-05-17T21:37:11.5755355Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:37:11.5755787Z TZ: UTC 2021-05-17T21:37:11.5756160Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:37:11.5756556Z NOT_CRAN: true 2021-05-17T21:37:11.5756935Z ##[endgroup] 2021-05-17T21:37:11.6083976Z Package: aal 2021-05-17T21:37:11.6087540Z Version: 0.1.1 2021-05-17T21:37:11.6088582Z OS: Linux 2021-05-17T21:37:11.6142833Z ##[group]Run install.packages('remotes') 2021-05-17T21:37:11.6143555Z install.packages('remotes') 2021-05-17T21:37:11.6144342Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-17T21:37:11.6145293Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-17T21:37:11.6152391Z shell: /usr/local/bin/Rscript {0} 2021-05-17T21:37:11.6152794Z env: 2021-05-17T21:37:11.6153224Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:37:11.6153663Z TIC_DEPLOY_KEY: 2021-05-17T21:37:11.6154445Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:37:11.6155706Z GITHUB_PAT: *** 2021-05-17T21:37:11.6156468Z COVERALLS_TOKEN: *** 2021-05-17T21:37:11.6157054Z continue-on-error: true 2021-05-17T21:37:11.6157509Z VDIFFR_RUN_TESTS: 2021-05-17T21:37:11.6157959Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:37:11.6158396Z TZ: UTC 2021-05-17T21:37:11.6158768Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:37:11.6159152Z NOT_CRAN: true 2021-05-17T21:37:11.6159516Z ##[endgroup] 2021-05-17T21:37:11.7854470Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:37:11.7864157Z (as ‘lib’ is unspecified) 2021-05-17T21:37:26.1652760Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-17T21:37:26.4337919Z Content type 'binary/octet-stream' length 148709 bytes (145 KB) 2021-05-17T21:37:26.4447056Z ================================================== 2021-05-17T21:37:26.4447927Z downloaded 145 KB 2021-05-17T21:37:26.4448400Z 2021-05-17T21:37:26.7246062Z * installing *source* package ‘remotes’ ... 2021-05-17T21:37:26.7285478Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-05-17T21:37:26.7286636Z ** using staged installation 2021-05-17T21:37:26.7447234Z ** R 2021-05-17T21:37:26.7630117Z ** inst 2021-05-17T21:37:26.7641453Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:37:28.5088250Z ** help 2021-05-17T21:37:28.5953614Z *** installing help indices 2021-05-17T21:37:28.6538654Z ** building package indices 2021-05-17T21:37:28.8826884Z ** installing vignettes 2021-05-17T21:37:28.8885084Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:37:29.0582722Z ** testing if installed package can be loaded from final location 2021-05-17T21:37:29.2595445Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:37:29.2616842Z * DONE (remotes) 2021-05-17T21:37:29.2707411Z 2021-05-17T21:37:29.2708673Z The downloaded source packages are in 2021-05-17T21:37:29.2709975Z ‘/tmp/Rtmp4CCWSZ/downloaded_packages’ 2021-05-17T21:37:46.4779602Z ##[group]Run actions/cache@v1 2021-05-17T21:37:46.4780057Z with: 2021-05-17T21:37:46.4780472Z path: /home/runner/work/_temp/Library 2021-05-17T21:37:46.4783534Z key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-7cda2b4e207a7ba6053d53bc189bfc5eb9abd346b7dbd64074c05fb1513ae9bc 2021-05-17T21:37:46.4787561Z restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1- 2021-05-17T21:37:46.4788794Z env: 2021-05-17T21:37:46.4789207Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:37:46.4789659Z TIC_DEPLOY_KEY: 2021-05-17T21:37:46.4790432Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:37:46.4792323Z GITHUB_PAT: *** 2021-05-17T21:37:46.4793119Z COVERALLS_TOKEN: *** 2021-05-17T21:37:46.4793584Z continue-on-error: true 2021-05-17T21:37:46.4794041Z VDIFFR_RUN_TESTS: 2021-05-17T21:37:46.4794508Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:37:46.4794983Z TZ: UTC 2021-05-17T21:37:46.4795343Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:37:46.4795749Z NOT_CRAN: true 2021-05-17T21:37:46.4796108Z ##[endgroup] 2021-05-17T21:37:46.5205054Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-17T21:37:46.5273595Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-17T21:37:46.5274488Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-17T21:37:46.5275321Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-17T21:37:46.5276017Z sudo -s eval "$sysreqs" 2021-05-17T21:37:46.5319777Z shell: /usr/bin/bash -e {0} 2021-05-17T21:37:46.5320160Z env: 2021-05-17T21:37:46.5320575Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:37:46.5321037Z TIC_DEPLOY_KEY: 2021-05-17T21:37:46.5321813Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:37:46.5323109Z GITHUB_PAT: *** 2021-05-17T21:37:46.5323889Z COVERALLS_TOKEN: *** 2021-05-17T21:37:46.5324465Z continue-on-error: true 2021-05-17T21:37:46.5324923Z VDIFFR_RUN_TESTS: 2021-05-17T21:37:46.5325393Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:37:46.5325810Z TZ: UTC 2021-05-17T21:37:46.5326194Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:37:46.5326592Z NOT_CRAN: true 2021-05-17T21:37:46.5327049Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-17T21:37:46.5327500Z ##[endgroup] 2021-05-17T21:37:46.7146648Z Using github PAT from envvar GITHUB_PAT 2021-05-17T21:37:47.2467894Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-17T21:38:02.3142320Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-17T21:38:02.3143100Z crayon (NA -> 1.4.1) [CRAN] 2021-05-17T21:38:02.3143755Z R6 (NA -> 2.5.0) [CRAN] 2021-05-17T21:38:02.3144403Z desc (NA -> 1.3.0) [CRAN] 2021-05-17T21:38:02.3145063Z debugme (NA -> 1.1.0) [CRAN] 2021-05-17T21:38:02.3168317Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-17T21:38:02.3179375Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:38:02.3180172Z (as ‘lib’ is unspecified) 2021-05-17T21:38:16.3804955Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-17T21:38:18.9159527Z Content type 'binary/octet-stream' length 61445 bytes (60 KB) 2021-05-17T21:38:18.9213753Z ================================================== 2021-05-17T21:38:18.9214527Z downloaded 60 KB 2021-05-17T21:38:18.9214990Z 2021-05-17T21:38:18.9249460Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-17T21:38:19.3114250Z Content type 'binary/octet-stream' length 35834 bytes (34 KB) 2021-05-17T21:38:19.3151058Z ================================================== 2021-05-17T21:38:19.3151942Z downloaded 34 KB 2021-05-17T21:38:19.3152611Z 2021-05-17T21:38:19.3189243Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-17T21:38:19.6240404Z Content type 'binary/octet-stream' length 64110 bytes (62 KB) 2021-05-17T21:38:19.6241333Z ================================================== 2021-05-17T21:38:19.6241815Z downloaded 62 KB 2021-05-17T21:38:19.6242126Z 2021-05-17T21:38:19.6286948Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-17T21:38:21.0738161Z Content type 'binary/octet-stream' length 292756 bytes (285 KB) 2021-05-17T21:38:21.1843897Z ================================================== 2021-05-17T21:38:21.1845209Z downloaded 285 KB 2021-05-17T21:38:21.1845761Z 2021-05-17T21:38:21.1883645Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-17T21:38:21.8757633Z Content type 'application/x-tar' length 997019 bytes (973 KB) 2021-05-17T21:38:21.9030371Z ================================================== 2021-05-17T21:38:21.9031394Z downloaded 973 KB 2021-05-17T21:38:21.9031866Z 2021-05-17T21:38:22.1563906Z * installing *source* package ‘rprojroot’ ... 2021-05-17T21:38:22.1585802Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked 2021-05-17T21:38:22.1587386Z ** using staged installation 2021-05-17T21:38:22.1714965Z ** R 2021-05-17T21:38:22.1759378Z ** inst 2021-05-17T21:38:22.1767896Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:38:22.6366701Z ** help 2021-05-17T21:38:22.6624473Z *** installing help indices 2021-05-17T21:38:22.6892536Z *** copying figures 2021-05-17T21:38:22.6897134Z ** building package indices 2021-05-17T21:38:22.8788032Z ** installing vignettes 2021-05-17T21:38:22.8848426Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:38:23.0591533Z ** testing if installed package can be loaded from final location 2021-05-17T21:38:23.2330517Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:38:23.2338126Z * DONE (rprojroot) 2021-05-17T21:38:23.4667205Z * installing *source* package ‘crayon’ ... 2021-05-17T21:38:23.4684367Z ** package ‘crayon’ successfully unpacked and MD5 sums checked 2021-05-17T21:38:23.4685568Z ** using staged installation 2021-05-17T21:38:23.4812212Z ** R 2021-05-17T21:38:23.4896515Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:38:24.3082368Z ** help 2021-05-17T21:38:24.3604489Z *** installing help indices 2021-05-17T21:38:24.3969441Z ** building package indices 2021-05-17T21:38:24.6133466Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:38:24.7863196Z ** testing if installed package can be loaded from final location 2021-05-17T21:38:24.9686388Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:38:24.9697051Z * DONE (crayon) 2021-05-17T21:38:25.1930193Z * installing *source* package ‘R6’ ... 2021-05-17T21:38:25.1945849Z ** package ‘R6’ successfully unpacked and MD5 sums checked 2021-05-17T21:38:25.1947436Z ** using staged installation 2021-05-17T21:38:25.2068319Z ** R 2021-05-17T21:38:25.2131001Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:38:25.6787081Z ** help 2021-05-17T21:38:25.6978507Z *** installing help indices 2021-05-17T21:38:25.7167070Z *** copying figures 2021-05-17T21:38:25.7170443Z ** building package indices 2021-05-17T21:38:25.9019072Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:38:26.0735195Z ** testing if installed package can be loaded from final location 2021-05-17T21:38:26.2467218Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:38:26.2476518Z * DONE (R6) 2021-05-17T21:38:26.5406595Z * installing *source* package ‘desc’ ... 2021-05-17T21:38:26.5453957Z ** package ‘desc’ successfully unpacked and MD5 sums checked 2021-05-17T21:38:26.5455183Z ** using staged installation 2021-05-17T21:38:26.5602644Z ** R 2021-05-17T21:38:26.5723966Z ** inst 2021-05-17T21:38:26.5738092Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:38:28.0827026Z ** help 2021-05-17T21:38:28.2055586Z *** installing help indices 2021-05-17T21:38:28.2907348Z ** building package indices 2021-05-17T21:38:28.5536679Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:38:28.7364813Z ** testing if installed package can be loaded from final location 2021-05-17T21:38:28.9434570Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:38:28.9451362Z * DONE (desc) 2021-05-17T21:38:29.1927757Z * installing *source* package ‘debugme’ ... 2021-05-17T21:38:29.1958352Z ** package ‘debugme’ successfully unpacked and MD5 sums checked 2021-05-17T21:38:29.1959584Z ** using staged installation 2021-05-17T21:38:29.2062710Z ** R 2021-05-17T21:38:29.2091767Z ** inst 2021-05-17T21:38:29.2110946Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:38:29.5122958Z ** help 2021-05-17T21:38:29.5249918Z *** installing help indices 2021-05-17T21:38:29.5460556Z ** building package indices 2021-05-17T21:38:29.7290575Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:38:29.9093203Z ** testing if installed package can be loaded from final location 2021-05-17T21:38:30.0871666Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:38:30.0878056Z * DONE (debugme) 2021-05-17T21:38:30.0952360Z 2021-05-17T21:38:30.0953155Z The downloaded source packages are in 2021-05-17T21:38:30.0954564Z ‘/tmp/Rtmp7QOiHF/downloaded_packages’ 2021-05-17T21:38:30.0955242Z Running `R CMD build`... 2021-05-17T21:38:30.3532864Z * checking for file ‘/tmp/Rtmp7QOiHF/remotes68ca6012a6bd/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-17T21:38:30.3534630Z * preparing ‘sysreqs’: 2021-05-17T21:38:30.3535930Z * checking DESCRIPTION meta-information ... OK 2021-05-17T21:38:30.3537345Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:38:30.3538456Z * checking for empty or unneeded directories 2021-05-17T21:38:30.3539580Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T21:38:30.3540910Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-17T21:38:30.3543058Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:38:30.3544127Z (as ‘lib’ is unspecified) 2021-05-17T21:38:30.5493096Z * installing *source* package ‘sysreqs’ ... 2021-05-17T21:38:30.5494583Z ** using staged installation 2021-05-17T21:38:30.5617236Z ** R 2021-05-17T21:38:30.5648312Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:38:30.9121889Z ** help 2021-05-17T21:38:30.9327553Z *** installing help indices 2021-05-17T21:38:30.9493142Z ** building package indices 2021-05-17T21:38:31.1330445Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:38:31.3197559Z ** testing if installed package can be loaded from final location 2021-05-17T21:38:31.5064814Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:38:31.5071234Z * DONE (sysreqs) 2021-05-17T21:38:47.9548987Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-17T21:38:47.9551458Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-05-17T21:38:47.9577369Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-05-17T21:38:47.9969576Z Hit:4 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-17T21:38:48.0148761Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-17T21:38:48.0591252Z Hit:6 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-17T21:38:48.1012945Z Hit:7 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-17T21:38:48.2969824Z Hit:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-17T21:38:48.4545659Z Hit:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-17T21:38:49.5816090Z Reading package lists... 2021-05-17T21:38:49.6551220Z Reading package lists... 2021-05-17T21:38:49.8067898Z Building dependency tree... 2021-05-17T21:38:49.8089204Z Reading state information... 2021-05-17T21:38:49.9541609Z libicu-dev is already the newest version (66.1-2ubuntu2). 2021-05-17T21:38:49.9544477Z libicu-dev set to manually installed. 2021-05-17T21:38:49.9548654Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.3). 2021-05-17T21:38:49.9549672Z pandoc is already the newest version (2.7.3-1). 2021-05-17T21:38:49.9550499Z The following additional packages will be installed: 2021-05-17T21:38:49.9551622Z libbibutils6 libghc-pandoc-citeproc-data 2021-05-17T21:38:49.9552409Z Suggested packages: 2021-05-17T21:38:49.9553351Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev 2021-05-17T21:38:49.9983790Z The following NEW packages will be installed: 2021-05-17T21:38:49.9986946Z libbibutils6 libcurl4-openssl-dev libghc-pandoc-citeproc-data 2021-05-17T21:38:49.9988204Z pandoc-citeproc 2021-05-17T21:38:50.0163933Z 0 upgraded, 4 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:38:50.0164857Z Need to get 13.7 MB of archives. 2021-05-17T21:38:50.0165913Z After this operation, 109 MB of additional disk space will be used. 2021-05-17T21:38:50.0167911Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB] 2021-05-17T21:38:50.0245475Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-17T21:38:50.0285589Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB] 2021-05-17T21:38:50.0291170Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB] 2021-05-17T21:38:50.6570332Z Fetched 13.7 MB in 0s (58.4 MB/s) 2021-05-17T21:38:50.6911465Z Selecting previously unselected package libbibutils6. 2021-05-17T21:38:50.6995677Z (Reading database ... 2021-05-17T21:38:50.6996314Z (Reading database ... 5% 2021-05-17T21:38:50.6996892Z (Reading database ... 10% 2021-05-17T21:38:50.6997908Z (Reading database ... 15% 2021-05-17T21:38:50.6998576Z (Reading database ... 20% 2021-05-17T21:38:50.6999152Z (Reading database ... 25% 2021-05-17T21:38:50.6999712Z (Reading database ... 30% 2021-05-17T21:38:50.7000269Z (Reading database ... 35% 2021-05-17T21:38:50.7000810Z (Reading database ... 40% 2021-05-17T21:38:50.7001373Z (Reading database ... 45% 2021-05-17T21:38:50.7002279Z (Reading database ... 50% 2021-05-17T21:38:50.7033391Z (Reading database ... 55% 2021-05-17T21:38:50.7080837Z (Reading database ... 60% 2021-05-17T21:38:50.7121321Z (Reading database ... 65% 2021-05-17T21:38:50.7302705Z (Reading database ... 70% 2021-05-17T21:38:50.7332570Z (Reading database ... 75% 2021-05-17T21:38:50.7587906Z (Reading database ... 80% 2021-05-17T21:38:50.7686225Z (Reading database ... 85% 2021-05-17T21:38:50.8066890Z (Reading database ... 90% 2021-05-17T21:38:50.8143972Z (Reading database ... 95% 2021-05-17T21:38:50.8144607Z (Reading database ... 100% 2021-05-17T21:38:50.8145450Z (Reading database ... 285139 files and directories currently installed.) 2021-05-17T21:38:50.8278765Z Preparing to unpack .../libbibutils6_6.2-1_amd64.deb ... 2021-05-17T21:38:50.8302075Z Unpacking libbibutils6 (6.2-1) ... 2021-05-17T21:38:50.9027968Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-17T21:38:50.9289885Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-17T21:38:50.9299859Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-17T21:38:50.9948077Z Selecting previously unselected package libghc-pandoc-citeproc-data. 2021-05-17T21:38:51.0173749Z Preparing to unpack .../libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ... 2021-05-17T21:38:51.0184311Z Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-17T21:38:51.0508671Z Selecting previously unselected package pandoc-citeproc. 2021-05-17T21:38:51.0792009Z Preparing to unpack .../pandoc-citeproc_0.15.0.1-1build4_amd64.deb ... 2021-05-17T21:38:51.0800562Z Unpacking pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-17T21:38:51.0831186Z Replaced by files in installed package pandoc (2.7.3-1) ... 2021-05-17T21:38:52.4044674Z Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-17T21:38:52.4070629Z Setting up libbibutils6 (6.2-1) ... 2021-05-17T21:38:52.4110041Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-17T21:38:52.4131764Z Setting up pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-17T21:38:52.4161179Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:38:55.4720808Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:38:57.3580600Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-17T21:38:57.3581295Z remotes::install_github("ropensci/tic") 2021-05-17T21:38:57.3581926Z remotes::install_github("muschellij2/ghtravis") 2021-05-17T21:38:57.3582607Z remotes::install_github("muschellij2/aghast") 2021-05-17T21:38:57.3583217Z remotes::install_cran("covr") 2021-05-17T21:38:57.3590501Z shell: /usr/local/bin/Rscript {0} 2021-05-17T21:38:57.3590921Z env: 2021-05-17T21:38:57.3591401Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:38:57.3591866Z TIC_DEPLOY_KEY: 2021-05-17T21:38:57.3592649Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:38:57.3594208Z GITHUB_PAT: *** 2021-05-17T21:38:57.3595088Z COVERALLS_TOKEN: *** 2021-05-17T21:38:57.3595577Z continue-on-error: true 2021-05-17T21:38:57.3596042Z VDIFFR_RUN_TESTS: 2021-05-17T21:38:57.3596501Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:38:57.3596979Z TZ: UTC 2021-05-17T21:38:57.3597339Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:38:57.3597737Z NOT_CRAN: true 2021-05-17T21:38:57.3598088Z ##[endgroup] 2021-05-17T21:38:57.5429346Z Using github PAT from envvar GITHUB_PAT 2021-05-17T21:38:58.0458175Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-17T21:39:13.6770394Z rlang (NA -> 0.4.11) [CRAN] 2021-05-17T21:39:13.6771202Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-17T21:39:13.6771887Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-17T21:39:13.6772952Z sys (NA -> 3.4 ) [CRAN] 2021-05-17T21:39:13.6773647Z askpass (NA -> 1.1 ) [CRAN] 2021-05-17T21:39:13.6774332Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-17T21:39:13.6775020Z mime (NA -> 0.10 ) [CRAN] 2021-05-17T21:39:13.6775668Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-17T21:39:13.6776358Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-17T21:39:13.6777038Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-17T21:39:13.6777678Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-17T21:39:13.6778368Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-17T21:39:13.6779030Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-17T21:39:13.6779688Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-17T21:39:13.6780381Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-17T21:39:13.6781101Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-17T21:39:13.6781817Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-17T21:39:13.6782478Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-17T21:39:13.6783143Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-17T21:39:13.6783827Z whisker (NA -> 0.4 ) [CRAN] 2021-05-17T21:39:13.6784511Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-17T21:39:13.6785208Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-17T21:39:13.6785910Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-17T21:39:13.6786912Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-17T21:39:13.6787572Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-17T21:39:13.6788209Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-17T21:39:13.6788877Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-17T21:39:13.6789562Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-17T21:39:13.6791557Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-17T21:39:13.6792162Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-17T21:39:13.6792740Z git2r (NA -> 0.28.0) [CRAN] 2021-05-17T21:39:13.6794447Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-17T21:39:13.6803294Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:39:13.6804065Z (as ‘lib’ is unspecified) 2021-05-17T21:39:27.9300660Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-17T21:39:28.1974128Z Content type 'binary/octet-stream' length 859995 bytes (839 KB) 2021-05-17T21:39:28.2271719Z ================================================== 2021-05-17T21:39:28.2272664Z downloaded 839 KB 2021-05-17T21:39:28.2273437Z 2021-05-17T21:39:28.2306686Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-17T21:39:28.5049693Z Content type 'binary/octet-stream' length 264532 bytes (258 KB) 2021-05-17T21:39:28.5223345Z ================================================== 2021-05-17T21:39:28.5223916Z downloaded 258 KB 2021-05-17T21:39:28.5224199Z 2021-05-17T21:39:28.5263018Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-17T21:39:28.9151040Z Content type 'binary/octet-stream' length 100043 bytes (97 KB) 2021-05-17T21:39:28.9235772Z ================================================== 2021-05-17T21:39:28.9236280Z downloaded 97 KB 2021-05-17T21:39:28.9236547Z 2021-05-17T21:39:28.9273098Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-17T21:39:29.3159067Z Content type 'binary/octet-stream' length 20291 bytes (19 KB) 2021-05-17T21:39:29.3160209Z ================================================== 2021-05-17T21:39:29.3161082Z downloaded 19 KB 2021-05-17T21:39:29.3161395Z 2021-05-17T21:39:29.3199900Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-17T21:39:29.7070191Z Content type 'application/x-tar' length 5688 bytes 2021-05-17T21:39:29.7072606Z ================================================== 2021-05-17T21:39:29.7073444Z downloaded 5688 bytes 2021-05-17T21:39:29.7074245Z 2021-05-17T21:39:29.7107174Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-17T21:39:30.1024578Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB) 2021-05-17T21:39:30.1331177Z ================================================== 2021-05-17T21:39:30.1332077Z downloaded 1.3 MB 2021-05-17T21:39:30.1332556Z 2021-05-17T21:39:30.1368839Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-17T21:39:30.3058878Z Content type 'binary/octet-stream' length 12958 bytes (12 KB) 2021-05-17T21:39:30.3062481Z ================================================== 2021-05-17T21:39:30.3062951Z downloaded 12 KB 2021-05-17T21:39:30.3063224Z 2021-05-17T21:39:30.3099561Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-17T21:39:30.5912194Z Content type 'binary/octet-stream' length 798588 bytes (779 KB) 2021-05-17T21:39:30.6161187Z ================================================== 2021-05-17T21:39:30.6161710Z downloaded 779 KB 2021-05-17T21:39:30.6161987Z 2021-05-17T21:39:30.6199546Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-17T21:39:30.8959815Z Content type 'binary/octet-stream' length 422264 bytes (412 KB) 2021-05-17T21:39:30.9165821Z ================================================== 2021-05-17T21:39:30.9166708Z downloaded 412 KB 2021-05-17T21:39:30.9167337Z 2021-05-17T21:39:30.9283494Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-17T21:39:31.3195119Z Content type 'application/x-tar' length 3475 bytes 2021-05-17T21:39:31.3196588Z ================================================== 2021-05-17T21:39:31.3197441Z downloaded 3475 bytes 2021-05-17T21:39:31.3197980Z 2021-05-17T21:39:31.3229717Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-17T21:39:31.5035688Z Content type 'binary/octet-stream' length 159877 bytes (156 KB) 2021-05-17T21:39:31.5156540Z ================================================== 2021-05-17T21:39:31.5158716Z downloaded 156 KB 2021-05-17T21:39:31.5160086Z 2021-05-17T21:39:31.5192541Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-17T21:39:31.9060453Z Content type 'binary/octet-stream' length 62129 bytes (60 KB) 2021-05-17T21:39:31.9117582Z ================================================== 2021-05-17T21:39:31.9119246Z downloaded 60 KB 2021-05-17T21:39:31.9119760Z 2021-05-17T21:39:31.9158718Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-17T21:39:32.3057897Z Content type 'binary/octet-stream' length 158132 bytes (154 KB) 2021-05-17T21:39:32.3166334Z ================================================== 2021-05-17T21:39:32.3168794Z downloaded 154 KB 2021-05-17T21:39:32.3170225Z 2021-05-17T21:39:32.3206766Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-17T21:39:32.5870437Z Content type 'binary/octet-stream' length 113091 bytes (110 KB) 2021-05-17T21:39:32.5976839Z ================================================== 2021-05-17T21:39:32.5977713Z downloaded 110 KB 2021-05-17T21:39:32.5978429Z 2021-05-17T21:39:32.6014992Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-17T21:39:33.2574836Z Content type 'binary/octet-stream' length 109870 bytes (107 KB) 2021-05-17T21:39:33.2623821Z ================================================== 2021-05-17T21:39:33.2624373Z downloaded 107 KB 2021-05-17T21:39:33.2624690Z 2021-05-17T21:39:33.2670235Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-17T21:39:33.6599783Z Content type 'binary/octet-stream' length 230676 bytes (225 KB) 2021-05-17T21:39:33.6750900Z ================================================== 2021-05-17T21:39:33.6751737Z downloaded 225 KB 2021-05-17T21:39:33.6752316Z 2021-05-17T21:39:33.6791970Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-17T21:39:34.1858444Z Content type 'binary/octet-stream' length 44517 bytes (43 KB) 2021-05-17T21:39:34.1859780Z ================================================== 2021-05-17T21:39:34.1860749Z downloaded 43 KB 2021-05-17T21:39:34.1861119Z 2021-05-17T21:39:34.1901861Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-17T21:39:34.4594592Z Content type 'binary/octet-stream' length 92979 bytes (90 KB) 2021-05-17T21:39:34.4689420Z ================================================== 2021-05-17T21:39:34.4689899Z downloaded 90 KB 2021-05-17T21:39:34.4690179Z 2021-05-17T21:39:34.4727771Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-17T21:39:34.8561812Z Content type 'binary/octet-stream' length 95150 bytes (92 KB) 2021-05-17T21:39:34.8633436Z ================================================== 2021-05-17T21:39:34.8634281Z downloaded 92 KB 2021-05-17T21:39:34.8636865Z 2021-05-17T21:39:34.8672819Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-17T21:39:35.1800474Z Content type 'application/x-tar' length 28675 bytes (28 KB) 2021-05-17T21:39:35.1801994Z ================================================== 2021-05-17T21:39:35.1802768Z downloaded 28 KB 2021-05-17T21:39:35.1803291Z 2021-05-17T21:39:35.1840021Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-17T21:39:35.5679789Z Content type 'binary/octet-stream' length 12326 bytes (12 KB) 2021-05-17T21:39:35.5683509Z ================================================== 2021-05-17T21:39:35.5684032Z downloaded 12 KB 2021-05-17T21:39:35.5684354Z 2021-05-17T21:39:35.5715376Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-17T21:39:35.9560000Z Content type 'binary/octet-stream' length 373001 bytes (364 KB) 2021-05-17T21:39:35.9748322Z ================================================== 2021-05-17T21:39:35.9749329Z downloaded 364 KB 2021-05-17T21:39:35.9749860Z 2021-05-17T21:39:35.9785979Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-17T21:39:36.2595284Z Content type 'binary/octet-stream' length 83493 bytes (81 KB) 2021-05-17T21:39:36.2657206Z ================================================== 2021-05-17T21:39:36.2658036Z downloaded 81 KB 2021-05-17T21:39:36.2658634Z 2021-05-17T21:39:36.2698863Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-17T21:39:36.7035886Z Content type 'binary/octet-stream' length 45853 bytes (44 KB) 2021-05-17T21:39:36.7085343Z ================================================== 2021-05-17T21:39:36.7086147Z downloaded 44 KB 2021-05-17T21:39:36.7086692Z 2021-05-17T21:39:36.7125802Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-17T21:39:37.0960789Z Content type 'binary/octet-stream' length 66528 bytes (64 KB) 2021-05-17T21:39:37.1035066Z ================================================== 2021-05-17T21:39:37.1035529Z downloaded 64 KB 2021-05-17T21:39:37.1035923Z 2021-05-17T21:39:37.1071633Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-17T21:39:37.4616903Z Content type 'binary/octet-stream' length 800044 bytes (781 KB) 2021-05-17T21:39:37.4865086Z ================================================== 2021-05-17T21:39:37.4865524Z downloaded 781 KB 2021-05-17T21:39:37.4865849Z 2021-05-17T21:39:37.4901311Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-17T21:39:37.8424824Z Content type 'binary/octet-stream' length 20919 bytes (20 KB) 2021-05-17T21:39:37.8428263Z ================================================== 2021-05-17T21:39:37.8429210Z downloaded 20 KB 2021-05-17T21:39:37.8429567Z 2021-05-17T21:39:37.8470409Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cachem_1.0.5.tar.gz' 2021-05-17T21:39:38.1889917Z Content type 'binary/octet-stream' length 24954 bytes (24 KB) 2021-05-17T21:39:38.1890776Z ================================================== 2021-05-17T21:39:38.1891262Z downloaded 24 KB 2021-05-17T21:39:38.1891559Z 2021-05-17T21:39:38.1933715Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-17T21:39:38.4398567Z Content type 'binary/octet-stream' length 304209 bytes (297 KB) 2021-05-17T21:39:38.5499865Z ================================================== 2021-05-17T21:39:38.5500538Z downloaded 297 KB 2021-05-17T21:39:38.5500899Z 2021-05-17T21:39:38.5543936Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-17T21:39:39.0164110Z Content type 'binary/octet-stream' length 17411 bytes (17 KB) 2021-05-17T21:39:39.0167279Z ================================================== 2021-05-17T21:39:39.0167812Z downloaded 17 KB 2021-05-17T21:39:39.0168112Z 2021-05-17T21:39:39.0212879Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-17T21:39:39.3262595Z Content type 'binary/octet-stream' length 1223574 bytes (1.2 MB) 2021-05-17T21:39:39.3635090Z ================================================== 2021-05-17T21:39:39.3635666Z downloaded 1.2 MB 2021-05-17T21:39:39.3635946Z 2021-05-17T21:39:39.8441540Z * installing *source* package ‘rlang’ ... 2021-05-17T21:39:39.8568820Z ** package ‘rlang’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:39.8571396Z ** using staged installation 2021-05-17T21:39:39.8751004Z ** libs 2021-05-17T21:39:39.8815710Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o 2021-05-17T21:39:39.9792354Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o 2021-05-17T21:39:40.2829597Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o 2021-05-17T21:39:42.3823998Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o 2021-05-17T21:39:43.3080959Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T21:39:43.3452706Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:39:43.3911801Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs 2021-05-17T21:39:43.3938177Z ** R 2021-05-17T21:39:43.4377174Z ** inst 2021-05-17T21:39:43.4385632Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:46.5867129Z ** help 2021-05-17T21:39:47.2511259Z *** installing help indices 2021-05-17T21:39:47.5308536Z *** copying figures 2021-05-17T21:39:47.5312863Z ** building package indices 2021-05-17T21:39:47.9972584Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:48.1872677Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:39:48.3367316Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:48.5870205Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:48.5903458Z * DONE (rlang) 2021-05-17T21:39:48.8370792Z * installing *source* package ‘magrittr’ ... 2021-05-17T21:39:48.8395927Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:48.8397138Z ** using staged installation 2021-05-17T21:39:48.8516766Z ** libs 2021-05-17T21:39:48.8564313Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o 2021-05-17T21:39:48.9752373Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:39:49.0258841Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:39:49.0508266Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs 2021-05-17T21:39:49.0509474Z ** R 2021-05-17T21:39:49.0529600Z ** inst 2021-05-17T21:39:49.0543679Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:49.3301126Z ** help 2021-05-17T21:39:49.3693046Z *** installing help indices 2021-05-17T21:39:49.3978844Z *** copying figures 2021-05-17T21:39:49.3981932Z ** building package indices 2021-05-17T21:39:49.5955346Z ** installing vignettes 2021-05-17T21:39:49.6016855Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:49.7725320Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:39:49.7895602Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:49.9573788Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:49.9580459Z * DONE (magrittr) 2021-05-17T21:39:50.1921696Z * installing *source* package ‘glue’ ... 2021-05-17T21:39:50.1940370Z ** package ‘glue’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:50.1942319Z ** using staged installation 2021-05-17T21:39:50.2089545Z ** libs 2021-05-17T21:39:50.2136024Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o 2021-05-17T21:39:50.3271573Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:39:50.3701195Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o 2021-05-17T21:39:50.4497400Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:39:50.4707973Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs 2021-05-17T21:39:50.4720406Z ** R 2021-05-17T21:39:50.4769707Z ** inst 2021-05-17T21:39:50.4780061Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:50.9227098Z ** help 2021-05-17T21:39:50.9509448Z *** installing help indices 2021-05-17T21:39:50.9795348Z *** copying figures 2021-05-17T21:39:50.9798282Z ** building package indices 2021-05-17T21:39:51.1707258Z ** installing vignettes 2021-05-17T21:39:51.1765204Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:51.3925749Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:39:51.4098494Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:51.6218927Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:51.6226537Z * DONE (glue) 2021-05-17T21:39:51.8311905Z * installing *source* package ‘sys’ ... 2021-05-17T21:39:51.8324259Z ** package ‘sys’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:51.8325345Z ** using staged installation 2021-05-17T21:39:51.8517091Z ** libs 2021-05-17T21:39:51.8564105Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o 2021-05-17T21:39:52.0934320Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:39:52.1372542Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:39:52.1628070Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs 2021-05-17T21:39:52.1629200Z ** R 2021-05-17T21:39:52.1655443Z ** inst 2021-05-17T21:39:52.1663538Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:52.4321732Z ** help 2021-05-17T21:39:52.4511268Z *** installing help indices 2021-05-17T21:39:52.4695884Z ** building package indices 2021-05-17T21:39:52.6551620Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:52.8236420Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:39:52.8414514Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:53.0062414Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:53.0068696Z * DONE (sys) 2021-05-17T21:39:53.2028891Z * installing *source* package ‘mime’ ... 2021-05-17T21:39:53.2037451Z ** package ‘mime’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:53.2038428Z ** using staged installation 2021-05-17T21:39:53.2163467Z ** libs 2021-05-17T21:39:53.2211095Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:39:53.2641501Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o 2021-05-17T21:39:53.3170067Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:39:53.3315215Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs 2021-05-17T21:39:53.3329759Z ** R 2021-05-17T21:39:53.3382335Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:53.6483335Z ** help 2021-05-17T21:39:53.6689763Z *** installing help indices 2021-05-17T21:39:53.6842143Z ** building package indices 2021-05-17T21:39:53.8668163Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:54.0358277Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:39:54.0529544Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:54.2214185Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:54.2220934Z * DONE (mime) 2021-05-17T21:39:54.5605315Z * installing *source* package ‘curl’ ... 2021-05-17T21:39:54.5681826Z ** package ‘curl’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:54.5682910Z ** using staged installation 2021-05-17T21:39:54.5765995Z Found pkg-config cflags and libs! 2021-05-17T21:39:54.6566616Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu 2021-05-17T21:39:54.6567678Z Using PKG_LIBS=-lcurl 2021-05-17T21:39:54.7042330Z ** libs 2021-05-17T21:39:54.7093475Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o 2021-05-17T21:39:54.7116744Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o 2021-05-17T21:39:54.7834033Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o 2021-05-17T21:39:54.9033477Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o 2021-05-17T21:39:54.9868881Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o 2021-05-17T21:39:55.0405043Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o 2021-05-17T21:39:55.1392386Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o 2021-05-17T21:39:55.2072775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o 2021-05-17T21:39:55.2598405Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o 2021-05-17T21:39:55.5765073Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o 2021-05-17T21:39:55.6132193Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:39:55.6668332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o 2021-05-17T21:39:55.7287322Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o 2021-05-17T21:39:55.8945940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o 2021-05-17T21:39:55.9466373Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o 2021-05-17T21:39:55.9988658Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-17T21:39:56.0399956Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-17T21:39:56.0843768Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o 2021-05-17T21:39:56.1367641Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:39:56.2520675Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T21:39:56.3171559Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o 2021-05-17T21:39:56.3357679Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o 2021-05-17T21:39:56.3839169Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:39:56.4148441Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs 2021-05-17T21:39:56.4150698Z ** R 2021-05-17T21:39:56.4266324Z ** inst 2021-05-17T21:39:56.4300834Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:56.9156930Z ** help 2021-05-17T21:39:56.9614519Z *** installing help indices 2021-05-17T21:39:56.9936534Z ** building package indices 2021-05-17T21:39:57.1943327Z ** installing vignettes 2021-05-17T21:39:57.2014866Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:57.3822490Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:39:57.3997853Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:57.5843487Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:57.5853126Z * DONE (curl) 2021-05-17T21:39:57.8989842Z * installing *source* package ‘jsonlite’ ... 2021-05-17T21:39:57.9043061Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:57.9045549Z ** using staged installation 2021-05-17T21:39:57.9176672Z ** libs 2021-05-17T21:39:57.9231911Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:39:57.9885589Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o 2021-05-17T21:39:58.0421519Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o 2021-05-17T21:39:58.1024961Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o 2021-05-17T21:39:58.2062830Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o 2021-05-17T21:39:58.2730175Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o 2021-05-17T21:39:58.3188731Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o 2021-05-17T21:39:58.3638070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o 2021-05-17T21:39:58.4162085Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o 2021-05-17T21:39:58.4637183Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o 2021-05-17T21:39:58.5879230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o 2021-05-17T21:39:58.6522294Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o 2021-05-17T21:39:58.7302016Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o 2021-05-17T21:39:58.7986968Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o 2021-05-17T21:39:58.8627536Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o 2021-05-17T21:39:58.9174967Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o 2021-05-17T21:39:58.9681303Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o 2021-05-17T21:39:59.0109835Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o 2021-05-17T21:39:59.0735999Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o 2021-05-17T21:39:59.1229431Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o 2021-05-17T21:39:59.1701568Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o 2021-05-17T21:39:59.2289678Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o 2021-05-17T21:39:59.2585102Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o 2021-05-17T21:39:59.3030254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o 2021-05-17T21:39:59.3957523Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o 2021-05-17T21:39:59.6222107Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o 2021-05-17T21:39:59.8701902Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o 2021-05-17T21:40:00.0315641Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o 2021-05-17T21:40:00.1629564Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o 2021-05-17T21:40:00.1714326Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:40:00.2028114Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs 2021-05-17T21:40:00.2031093Z ** R 2021-05-17T21:40:00.2192153Z ** inst 2021-05-17T21:40:00.2209003Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:01.2202825Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” 2021-05-17T21:40:01.2204965Z ** help 2021-05-17T21:40:01.2501573Z *** installing help indices 2021-05-17T21:40:01.2750429Z ** building package indices 2021-05-17T21:40:01.4707150Z ** installing vignettes 2021-05-17T21:40:01.4758390Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:01.6631081Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:40:01.6851085Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:01.8808269Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:01.8823204Z * DONE (jsonlite) 2021-05-17T21:40:02.0791652Z * installing *source* package ‘ini’ ... 2021-05-17T21:40:02.0798992Z ** package ‘ini’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:02.0800055Z ** using staged installation 2021-05-17T21:40:02.0902086Z ** R 2021-05-17T21:40:02.0926157Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:02.3234794Z ** help 2021-05-17T21:40:02.3357844Z *** installing help indices 2021-05-17T21:40:02.3582644Z ** building package indices 2021-05-17T21:40:02.5377728Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:02.7051498Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:02.8689188Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:02.8694830Z * DONE (ini) 2021-05-17T21:40:03.0926896Z * installing *source* package ‘gitcreds’ ... 2021-05-17T21:40:03.0945473Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:03.0946905Z ** using staged installation 2021-05-17T21:40:03.1050540Z ** R 2021-05-17T21:40:03.1107191Z ** inst 2021-05-17T21:40:03.1118121Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:03.5627023Z ** help 2021-05-17T21:40:03.5871842Z *** installing help indices 2021-05-17T21:40:03.6088856Z ** building package indices 2021-05-17T21:40:03.7937596Z ** installing vignettes 2021-05-17T21:40:03.7992450Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:03.9655304Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:04.1362541Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:04.1370644Z * DONE (gitcreds) 2021-05-17T21:40:04.3722573Z * installing *source* package ‘zip’ ... 2021-05-17T21:40:04.3750543Z ** package ‘zip’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:04.3754100Z ** using staged installation 2021-05-17T21:40:04.3851129Z ** libs 2021-05-17T21:40:04.3902497Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip 2021-05-17T21:40:07.8182716Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip 2021-05-17T21:40:09.5513675Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:40:09.5939370Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o 2021-05-17T21:40:11.9264127Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o 2021-05-17T21:40:12.0154835Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o 2021-05-17T21:40:12.1395120Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o 2021-05-17T21:40:12.1985463Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:40:12.2238792Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip 2021-05-17T21:40:12.2288929Z ** R 2021-05-17T21:40:12.2327090Z ** inst 2021-05-17T21:40:12.2336643Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:12.5456075Z ** help 2021-05-17T21:40:12.5662750Z *** installing help indices 2021-05-17T21:40:12.5894859Z ** building package indices 2021-05-17T21:40:12.7752545Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:12.9493666Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:40:12.9676448Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:13.1425194Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:13.1431984Z * DONE (zip) 2021-05-17T21:40:13.4276035Z * installing *source* package ‘rstudioapi’ ... 2021-05-17T21:40:13.4316352Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:13.4317517Z ** using staged installation 2021-05-17T21:40:13.4438474Z ** R 2021-05-17T21:40:13.4537222Z ** inst 2021-05-17T21:40:13.4555764Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:13.9546949Z ** help 2021-05-17T21:40:14.1155669Z *** installing help indices 2021-05-17T21:40:14.2284931Z *** copying figures 2021-05-17T21:40:14.2287257Z ** building package indices 2021-05-17T21:40:14.5147137Z ** installing vignettes 2021-05-17T21:40:14.5203730Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:14.6929266Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:14.8670773Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:14.8680452Z * DONE (rstudioapi) 2021-05-17T21:40:15.0813716Z * installing *source* package ‘fastmap’ ... 2021-05-17T21:40:15.0828524Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:15.0829636Z ** using staged installation 2021-05-17T21:40:15.1002417Z ** libs 2021-05-17T21:40:15.1054653Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o 2021-05-17T21:40:16.9270184Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:40:16.9719212Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:40:17.0348345Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs 2021-05-17T21:40:17.0367211Z ** R 2021-05-17T21:40:17.0414099Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:17.4482637Z ** help 2021-05-17T21:40:17.4654002Z *** installing help indices 2021-05-17T21:40:17.4833150Z ** building package indices 2021-05-17T21:40:17.6690957Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:17.8413521Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:40:17.8598204Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:18.0320066Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:18.0327503Z * DONE (fastmap) 2021-05-17T21:40:18.2675550Z * installing *source* package ‘yaml’ ... 2021-05-17T21:40:18.2700619Z ** package ‘yaml’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:18.2701782Z ** using staged installation 2021-05-17T21:40:18.2793509Z ** libs 2021-05-17T21:40:18.2847612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o 2021-05-17T21:40:18.5983476Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o 2021-05-17T21:40:18.7049614Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o 2021-05-17T21:40:19.5828120Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o 2021-05-17T21:40:19.7377814Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o 2021-05-17T21:40:19.8597539Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o 2021-05-17T21:40:20.1976963Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o 2021-05-17T21:40:20.4728506Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o 2021-05-17T21:40:20.5713452Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o 2021-05-17T21:40:20.9624093Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o 2021-05-17T21:40:21.0670696Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o 2021-05-17T21:40:22.3139262Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o 2021-05-17T21:40:22.3710893Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:40:22.4004148Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs 2021-05-17T21:40:22.4023523Z ** R 2021-05-17T21:40:22.4051471Z ** inst 2021-05-17T21:40:22.4064771Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:22.6416176Z ** help 2021-05-17T21:40:22.6610858Z *** installing help indices 2021-05-17T21:40:22.6847226Z ** building package indices 2021-05-17T21:40:22.8702219Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:23.0412340Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:40:23.0590644Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:23.2255421Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:23.2261987Z * DONE (yaml) 2021-05-17T21:40:23.4757424Z * installing *source* package ‘withr’ ... 2021-05-17T21:40:23.4782249Z ** package ‘withr’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:23.4783463Z ** using staged installation 2021-05-17T21:40:23.4933931Z ** R 2021-05-17T21:40:23.5015483Z ** inst 2021-05-17T21:40:23.5024353Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:24.1088607Z ** help 2021-05-17T21:40:24.1845051Z *** installing help indices 2021-05-17T21:40:24.2383726Z *** copying figures 2021-05-17T21:40:24.2386350Z ** building package indices 2021-05-17T21:40:24.4609415Z ** installing vignettes 2021-05-17T21:40:24.4668757Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:24.6347908Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:24.8123879Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:24.8133523Z * DONE (withr) 2021-05-17T21:40:25.0374427Z * installing *source* package ‘whisker’ ... 2021-05-17T21:40:25.0390394Z ** package ‘whisker’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:25.0391354Z ** using staged installation 2021-05-17T21:40:25.0483706Z ** R 2021-05-17T21:40:25.0523569Z ** inst 2021-05-17T21:40:25.0540997Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:25.4370468Z ** help 2021-05-17T21:40:25.4563818Z *** installing help indices 2021-05-17T21:40:25.4782728Z ** building package indices 2021-05-17T21:40:25.6674130Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:25.8330993Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:26.0039114Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:26.0048065Z * DONE (whisker) 2021-05-17T21:40:26.2107847Z * installing *source* package ‘rappdirs’ ... 2021-05-17T21:40:26.2118166Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:26.2119288Z ** using staged installation 2021-05-17T21:40:26.2334969Z ** libs 2021-05-17T21:40:26.2381255Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:40:26.2823437Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o 2021-05-17T21:40:26.3250504Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:40:26.3391690Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs 2021-05-17T21:40:26.3404304Z ** R 2021-05-17T21:40:26.3445348Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:26.6310069Z ** help 2021-05-17T21:40:26.6540388Z *** installing help indices 2021-05-17T21:40:26.6748431Z ** building package indices 2021-05-17T21:40:26.8646237Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:40:27.0367084Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:40:27.0540190Z ** testing if installed package can be loaded from final location 2021-05-17T21:40:27.2241081Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:40:27.2247547Z * DONE (rappdirs) 2021-05-17T21:40:27.6769018Z * installing *source* package ‘fs’ ... 2021-05-17T21:40:27.6897610Z ** package ‘fs’ successfully unpacked and MD5 sums checked 2021-05-17T21:40:27.6899842Z ** using staged installation 2021-05-17T21:40:27.7053576Z ** libs 2021-05-17T21:40:27.7112952Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o 2021-05-17T21:40:28.2188198Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o 2021-05-17T21:40:28.6168591Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o 2021-05-17T21:40:28.9861999Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o 2021-05-17T21:40:29.0632178Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o 2021-05-17T21:40:29.3501781Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o 2021-05-17T21:40:29.6381568Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o 2021-05-17T21:40:29.7221308Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o 2021-05-17T21:40:30.1326176Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o 2021-05-17T21:40:30.8245584Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o 2021-05-17T21:40:30.8247539Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o 2021-05-17T21:40:30.8250003Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o 2021-05-17T21:40:30.9083067Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o 2021-05-17T21:40:30.9482569Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o 2021-05-17T21:40:30.9771713Z (cd libuv-1.38.1 \ 2021-05-17T21:40:30.9773789Z && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) 2021-05-17T21:40:34.9768665Z make --directory=libuv-1.38.1 \ 2021-05-17T21:40:34.9769747Z HAVE_DTRACE=0 2021-05-17T21:40:34.9866655Z make[1]: Entering directory '/tmp/RtmprJARQI/R.INSTALL78dc5f90dfcf/fs/src/libuv-1.38.1' 2021-05-17T21:40:34.9958221Z CC src/libuv_la-fs-poll.lo 2021-05-17T21:40:35.5876864Z CC src/libuv_la-idna.lo 2021-05-17T21:40:36.1899457Z CC src/libuv_la-inet.lo 2021-05-17T21:40:36.8120438Z CC src/libuv_la-random.lo 2021-05-17T21:40:37.3150015Z CC src/libuv_la-strscpy.lo 2021-05-17T21:40:37.7812783Z CC src/libuv_la-threadpool.lo 2021-05-17T21:40:38.4053822Z CC src/libuv_la-timer.lo 2021-05-17T21:40:38.9938123Z CC src/libuv_la-uv-data-getter-setters.lo 2021-05-17T21:40:39.4987366Z CC src/libuv_la-uv-common.lo 2021-05-17T21:40:40.5328084Z CC src/libuv_la-version.lo 2021-05-17T21:40:40.9922805Z CC src/unix/libuv_la-async.lo 2021-05-17T21:40:41.5884441Z CC src/unix/libuv_la-core.lo 2021-05-17T21:40:42.6806685Z CC src/unix/libuv_la-dl.lo 2021-05-17T21:40:43.1785478Z CC src/unix/libuv_la-fs.lo 2021-05-17T21:40:44.6119112Z CC src/unix/libuv_la-getaddrinfo.lo 2021-05-17T21:40:45.1830487Z CC src/unix/libuv_la-getnameinfo.lo 2021-05-17T21:40:45.6910007Z CC src/unix/libuv_la-loop-watcher.lo 2021-05-17T21:40:46.2730522Z CC src/unix/libuv_la-loop.lo 2021-05-17T21:40:46.8312744Z CC src/unix/libuv_la-pipe.lo 2021-05-17T21:40:47.4404859Z CC src/unix/libuv_la-poll.lo 2021-05-17T21:40:47.9816613Z CC src/unix/libuv_la-process.lo 2021-05-17T21:40:48.7129000Z CC src/unix/libuv_la-random-devurandom.lo 2021-05-17T21:40:49.2233566Z CC src/unix/libuv_la-signal.lo 2021-05-17T21:40:50.0874700Z CC src/unix/libuv_la-stream.lo 2021-05-17T21:40:51.0911449Z CC src/unix/libuv_la-tcp.lo 2021-05-17T21:40:52.3282608Z CC src/unix/libuv_la-thread.lo 2021-05-17T21:40:52.4380960Z CC src/unix/libuv_la-tty.lo 2021-05-17T21:40:53.0225977Z CC src/unix/libuv_la-udp.lo 2021-05-17T21:40:54.0149262Z CC src/unix/libuv_la-linux-core.lo 2021-05-17T21:40:55.0596378Z CC src/unix/libuv_la-linux-inotify.lo 2021-05-17T21:40:55.8538681Z CC src/unix/libuv_la-linux-syscalls.lo 2021-05-17T21:40:56.2998256Z CC src/unix/libuv_la-procfs-exepath.lo 2021-05-17T21:40:56.7929659Z CC src/unix/libuv_la-proctitle.lo 2021-05-17T21:40:57.3209498Z CC src/unix/libuv_la-random-getrandom.lo 2021-05-17T21:40:57.8061945Z CC src/unix/libuv_la-random-sysctl-linux.lo 2021-05-17T21:40:58.3126928Z CCLD libuv.la 2021-05-17T21:40:58.5074027Z ar: `u' modifier ignored since `D' is the default (see `U') 2021-05-17T21:40:58.5402806Z make[1]: Leaving directory '/tmp/RtmprJARQI/R.INSTALL78dc5f90dfcf/fs/src/libuv-1.38.1' 2021-05-17T21:40:58.5422658Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o path.o fs.o link.o utils.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:40:58.6308176Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs 2021-05-17T21:40:58.6309441Z ** R 2021-05-17T21:40:58.6405042Z ** inst 2021-05-17T21:40:58.6415363Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:40:59.6044987Z ** help 2021-05-17T21:40:59.6713256Z *** installing help indices 2021-05-17T21:40:59.7199691Z ** building package indices 2021-05-17T21:40:59.9383688Z ** installing vignettes 2021-05-17T21:40:59.9493012Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:00.1704331Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:00.1888916Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:00.4125965Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:00.4137366Z * DONE (fs) 2021-05-17T21:41:00.6355984Z * installing *source* package ‘clipr’ ... 2021-05-17T21:41:00.6369121Z ** package ‘clipr’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:00.6371259Z ** using staged installation 2021-05-17T21:41:00.6572956Z ** R 2021-05-17T21:41:00.6612267Z ** inst 2021-05-17T21:41:00.6622203Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:00.9792359Z ** help 2021-05-17T21:41:01.0008860Z *** installing help indices 2021-05-17T21:41:01.0215344Z ** building package indices 2021-05-17T21:41:01.2098764Z ** installing vignettes 2021-05-17T21:41:01.2152680Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:01.3870521Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:01.5584089Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:01.5590732Z * DONE (clipr) 2021-05-17T21:41:02.2660998Z * installing *source* package ‘git2r’ ... 2021-05-17T21:41:02.2897440Z ** package ‘git2r’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:02.2900693Z ** using staged installation 2021-05-17T21:41:02.4614106Z checking build system type... x86_64-unknown-linux-gnu 2021-05-17T21:41:02.4615717Z checking host system type... x86_64-unknown-linux-gnu 2021-05-17T21:41:02.4622045Z checking for gcc... gcc 2021-05-17T21:41:02.5183120Z checking whether the C compiler works... yes 2021-05-17T21:41:02.5184237Z checking for C compiler default output file name... a.out 2021-05-17T21:41:02.5532313Z checking for suffix of executables... 2021-05-17T21:41:02.5930590Z checking whether we are cross compiling... no 2021-05-17T21:41:02.6153586Z checking for suffix of object files... o 2021-05-17T21:41:02.6356852Z checking whether we are using the GNU C compiler... yes 2021-05-17T21:41:02.6559639Z checking whether gcc accepts -g... yes 2021-05-17T21:41:02.6915166Z checking for gcc option to accept ISO C89... none needed 2021-05-17T21:41:02.6923052Z checking for pkg-config... /usr/bin/pkg-config 2021-05-17T21:41:02.6937045Z checking pkg-config is at least version 0.9.0... yes 2021-05-17T21:41:02.7008217Z Found pkg-config cflags and libs! 2021-05-17T21:41:02.7894315Z checking whether the libgit2 version will work in git2r... yes 2021-05-17T21:41:02.9051627Z checking whether the libgit2 function git_buf_dispose is available... yes 2021-05-17T21:41:03.0206541Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes 2021-05-17T21:41:03.1375317Z checking whether the libgit2 function git_error_last is available... yes 2021-05-17T21:41:03.2353163Z checking whether the libgit2 function git_oid_is_zero is available... no 2021-05-17T21:41:03.2354728Z ----- Results of the git2r package configure ----- 2021-05-17T21:41:03.2355121Z 2021-05-17T21:41:03.2355998Z PKG_CFLAGS: -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR 2021-05-17T21:41:03.2356733Z PKG_LIBS: -lgit2 2021-05-17T21:41:03.2356996Z 2021-05-17T21:41:03.2357649Z -------------------------------------------------- 2021-05-17T21:41:03.2559943Z configure: creating ./config.status 2021-05-17T21:41:03.3256109Z config.status: creating src/Makevars 2021-05-17T21:41:03.3782527Z ** libs 2021-05-17T21:41:03.3840160Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r.c -o git2r.o 2021-05-17T21:41:03.4471915Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_S3.c -o git2r_S3.o 2021-05-17T21:41:03.4947650Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o 2021-05-17T21:41:03.6424329Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o 2021-05-17T21:41:03.7268293Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o 2021-05-17T21:41:03.8422554Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o 2021-05-17T21:41:04.0556196Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o 2021-05-17T21:41:04.1412043Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o 2021-05-17T21:41:04.2248185Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o 2021-05-17T21:41:04.3657454Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_config.c -o git2r_config.o 2021-05-17T21:41:04.5131673Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o 2021-05-17T21:41:04.5987461Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o 2021-05-17T21:41:04.8321586Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_error.c -o git2r_error.o 2021-05-17T21:41:04.8937430Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o 2021-05-17T21:41:04.9732349Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_index.c -o git2r_index.o 2021-05-17T21:41:05.0529298Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o 2021-05-17T21:41:05.1290279Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o 2021-05-17T21:41:05.2923244Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_note.c -o git2r_note.o 2021-05-17T21:41:05.4128581Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_object.c -o git2r_object.o 2021-05-17T21:41:05.4898282Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o 2021-05-17T21:41:05.6411132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o 2021-05-17T21:41:05.7013331Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_push.c -o git2r_push.o 2021-05-17T21:41:05.7782217Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o 2021-05-17T21:41:05.8672623Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o 2021-05-17T21:41:05.9480634Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o 2021-05-17T21:41:06.1125942Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o 2021-05-17T21:41:06.2583840Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o 2021-05-17T21:41:06.3356124Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o 2021-05-17T21:41:06.4104795Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o 2021-05-17T21:41:06.5764014Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o 2021-05-17T21:41:06.6524146Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o 2021-05-17T21:41:06.7624888Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_status.c -o git2r_status.o 2021-05-17T21:41:06.9113726Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o 2021-05-17T21:41:07.0297235Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o 2021-05-17T21:41:07.0912287Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o 2021-05-17T21:41:07.1998497Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:07.2428835Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs 2021-05-17T21:41:07.2430315Z ** R 2021-05-17T21:41:07.2597734Z ** inst 2021-05-17T21:41:07.2607306Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:08.1840909Z ** help 2021-05-17T21:41:08.4139049Z *** installing help indices 2021-05-17T21:41:08.5955409Z ** building package indices 2021-05-17T21:41:08.9165654Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:09.0977355Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:09.1159442Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:09.3091243Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:09.3105293Z * DONE (git2r) 2021-05-17T21:41:09.5202669Z * installing *source* package ‘askpass’ ... 2021-05-17T21:41:09.5214866Z ** package ‘askpass’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:09.5218626Z ** using staged installation 2021-05-17T21:41:09.5350222Z ** libs 2021-05-17T21:41:09.5401456Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o 2021-05-17T21:41:09.5892772Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:09.6104428Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs 2021-05-17T21:41:09.6118448Z ** R 2021-05-17T21:41:09.6146816Z ** inst 2021-05-17T21:41:09.6154821Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:09.8593494Z ** help 2021-05-17T21:41:09.8771931Z *** installing help indices 2021-05-17T21:41:09.8911278Z ** building package indices 2021-05-17T21:41:10.0717812Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:10.2432284Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:10.2604869Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:10.4284388Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:10.4290255Z * DONE (askpass) 2021-05-17T21:41:10.7506192Z * installing *source* package ‘cli’ ... 2021-05-17T21:41:10.7561416Z ** package ‘cli’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:10.7562603Z ** using staged installation 2021-05-17T21:41:10.7742150Z ** R 2021-05-17T21:41:10.7997965Z ** inst 2021-05-17T21:41:10.8010551Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:13.1462559Z ** help 2021-05-17T21:41:13.3284058Z *** installing help indices 2021-05-17T21:41:13.4468497Z *** copying figures 2021-05-17T21:41:13.4469731Z ** building package indices 2021-05-17T21:41:13.7377025Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:13.9503571Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:14.2086814Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:14.2114239Z * DONE (cli) 2021-05-17T21:41:14.5166655Z * installing *source* package ‘purrr’ ... 2021-05-17T21:41:14.5215935Z ** package ‘purrr’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:14.5217039Z ** using staged installation 2021-05-17T21:41:14.5358640Z ** libs 2021-05-17T21:41:14.5408727Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o 2021-05-17T21:41:14.5776365Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-17T21:41:14.6630725Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-17T21:41:14.7468051Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o 2021-05-17T21:41:14.8512704Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:41:14.8939132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o 2021-05-17T21:41:15.0083080Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o 2021-05-17T21:41:15.1343879Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-17T21:41:15.2171802Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:41:15.2692924Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:15.2947966Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs 2021-05-17T21:41:15.2950963Z ** R 2021-05-17T21:41:15.3112408Z ** inst 2021-05-17T21:41:15.3122038Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:16.4879444Z ** help 2021-05-17T21:41:16.6534720Z *** installing help indices 2021-05-17T21:41:16.7522255Z *** copying figures 2021-05-17T21:41:16.7528444Z ** building package indices 2021-05-17T21:41:17.0204286Z ** installing vignettes 2021-05-17T21:41:17.0283812Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:17.2257357Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:17.2434271Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:17.4546975Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:17.4560957Z * DONE (purrr) 2021-05-17T21:41:17.7114310Z * installing *source* package ‘lifecycle’ ... 2021-05-17T21:41:17.7139811Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:17.7141037Z ** using staged installation 2021-05-17T21:41:17.7278715Z ** R 2021-05-17T21:41:17.7329643Z ** inst 2021-05-17T21:41:17.7337347Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:18.1298000Z ** help 2021-05-17T21:41:18.1616219Z *** installing help indices 2021-05-17T21:41:18.1854434Z *** copying figures 2021-05-17T21:41:18.1859063Z ** building package indices 2021-05-17T21:41:18.3747435Z ** installing vignettes 2021-05-17T21:41:18.3805709Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:18.5679026Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:18.7551299Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:18.7559279Z * DONE (lifecycle) 2021-05-17T21:41:18.9671446Z * installing *source* package ‘cachem’ ... 2021-05-17T21:41:18.9682870Z ** package ‘cachem’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:18.9683969Z ** using staged installation 2021-05-17T21:41:18.9811203Z ** libs 2021-05-17T21:41:18.9857347Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o 2021-05-17T21:41:19.0346493Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:41:19.0789018Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:19.1000220Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs 2021-05-17T21:41:19.1014847Z ** R 2021-05-17T21:41:19.1149228Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:19.6201717Z ** help 2021-05-17T21:41:19.6433831Z *** installing help indices 2021-05-17T21:41:19.6623915Z ** building package indices 2021-05-17T21:41:19.8514028Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:20.0423997Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:20.0598505Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:20.2535968Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:20.2544425Z * DONE (cachem) 2021-05-17T21:41:20.6869758Z * installing *source* package ‘openssl’ ... 2021-05-17T21:41:20.6991826Z ** package ‘openssl’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:20.6993086Z ** using staged installation 2021-05-17T21:41:20.7080043Z Found pkg-config cflags and libs! 2021-05-17T21:41:20.7908165Z Using PKG_CFLAGS= 2021-05-17T21:41:21.1443745Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 2021-05-17T21:41:21.1600628Z ** libs 2021-05-17T21:41:21.1655786Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-17T21:41:21.1679885Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-17T21:41:21.2487823Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:41:21.3255250Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o 2021-05-17T21:41:21.4243847Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o 2021-05-17T21:41:21.5757778Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o 2021-05-17T21:41:21.6391891Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o 2021-05-17T21:41:21.7297275Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o 2021-05-17T21:41:21.8453039Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o 2021-05-17T21:41:21.8975439Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o 2021-05-17T21:41:21.9913133Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o 2021-05-17T21:41:22.0551579Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o 2021-05-17T21:41:22.1555757Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o 2021-05-17T21:41:22.2839548Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o 2021-05-17T21:41:22.3711200Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o 2021-05-17T21:41:22.5515266Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o 2021-05-17T21:41:22.6033046Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o 2021-05-17T21:41:22.6447778Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o 2021-05-17T21:41:22.7708938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o 2021-05-17T21:41:22.9084347Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o 2021-05-17T21:41:23.0302934Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o 2021-05-17T21:41:23.0755483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o 2021-05-17T21:41:23.1719725Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o 2021-05-17T21:41:23.2900774Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-17T21:41:23.4309865Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o 2021-05-17T21:41:23.5440849Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o 2021-05-17T21:41:23.6699670Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o 2021-05-17T21:41:23.7919943Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o 2021-05-17T21:41:23.8589351Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o 2021-05-17T21:41:24.0308898Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-17T21:41:24.0363977Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:24.0911291Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs 2021-05-17T21:41:24.0928593Z ** R 2021-05-17T21:41:24.1033274Z ** inst 2021-05-17T21:41:24.1083895Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:25.0184400Z ** help 2021-05-17T21:41:25.0701851Z *** installing help indices 2021-05-17T21:41:25.1086293Z ** building package indices 2021-05-17T21:41:25.3189687Z ** installing vignettes 2021-05-17T21:41:25.3351262Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:25.5192813Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:25.5365509Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:25.7276245Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:25.7289163Z * DONE (openssl) 2021-05-17T21:41:25.9409848Z * installing *source* package ‘memoise’ ... 2021-05-17T21:41:25.9420703Z ** package ‘memoise’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:25.9421817Z ** using staged installation 2021-05-17T21:41:25.9571608Z ** R 2021-05-17T21:41:25.9674975Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:26.3507009Z ** help 2021-05-17T21:41:26.3728485Z *** installing help indices 2021-05-17T21:41:26.3968779Z ** building package indices 2021-05-17T21:41:26.5898025Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:26.7807689Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:26.9720479Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:26.9727014Z * DONE (memoise) 2021-05-17T21:41:27.2767698Z * installing *source* package ‘httr’ ... 2021-05-17T21:41:27.2817644Z ** package ‘httr’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:27.2820719Z ** using staged installation 2021-05-17T21:41:27.2970381Z ** R 2021-05-17T21:41:27.3136031Z ** demo 2021-05-17T21:41:27.3149527Z ** inst 2021-05-17T21:41:27.3164233Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:29.7260244Z ** help 2021-05-17T21:41:29.8765900Z *** installing help indices 2021-05-17T21:41:29.9773320Z ** building package indices 2021-05-17T21:41:30.2508203Z ** installing vignettes 2021-05-17T21:41:30.2574213Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:30.4295886Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:30.6461895Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:30.6488643Z * DONE (httr) 2021-05-17T21:41:30.8724810Z * installing *source* package ‘credentials’ ... 2021-05-17T21:41:30.8741296Z ** package ‘credentials’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:30.8742398Z ** using staged installation 2021-05-17T21:41:30.8871695Z ** R 2021-05-17T21:41:30.8912911Z ** inst 2021-05-17T21:41:30.8923685Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:31.3086636Z ** help 2021-05-17T21:41:31.3263796Z *** installing help indices 2021-05-17T21:41:31.3462492Z ** building package indices 2021-05-17T21:41:31.5284120Z ** installing vignettes 2021-05-17T21:41:31.5338221Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:31.7884698Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:32.0182281Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:32.0189908Z * DONE (credentials) 2021-05-17T21:41:32.2512903Z * installing *source* package ‘gh’ ... 2021-05-17T21:41:32.2530809Z ** package ‘gh’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:32.2532007Z ** using staged installation 2021-05-17T21:41:32.2676321Z ** R 2021-05-17T21:41:32.2754850Z ** inst 2021-05-17T21:41:32.2763726Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:33.2726549Z ** help 2021-05-17T21:41:33.3008631Z *** installing help indices 2021-05-17T21:41:33.3297481Z ** building package indices 2021-05-17T21:41:33.5196804Z ** installing vignettes 2021-05-17T21:41:33.5252154Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:33.7637948Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:34.0093734Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:34.0105191Z * DONE (gh) 2021-05-17T21:41:34.2618260Z * installing *source* package ‘gert’ ... 2021-05-17T21:41:34.2643578Z ** package ‘gert’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:34.2644789Z ** using staged installation 2021-05-17T21:41:34.2738482Z Found pkg-config cflags and libs! 2021-05-17T21:41:34.3541289Z Using PKG_CFLAGS= 2021-05-17T21:41:34.3542516Z Using PKG_LIBS=-lgit2 2021-05-17T21:41:34.3902891Z Configuration OK! 2021-05-17T21:41:34.4053810Z ** libs 2021-05-17T21:41:34.4103936Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o 2021-05-17T21:41:34.4129946Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o 2021-05-17T21:41:34.6109302Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o 2021-05-17T21:41:34.8253545Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o 2021-05-17T21:41:35.0355937Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o 2021-05-17T21:41:35.1188219Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o 2021-05-17T21:41:35.1915059Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o 2021-05-17T21:41:35.3316325Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:41:35.3919810Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o 2021-05-17T21:41:35.4897392Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o 2021-05-17T21:41:35.5954220Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o 2021-05-17T21:41:35.6772762Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o 2021-05-17T21:41:35.7863286Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o 2021-05-17T21:41:35.8659735Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:41:35.9811306Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T21:41:36.0523165Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:36.0826658Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs 2021-05-17T21:41:36.0843136Z ** R 2021-05-17T21:41:36.0925976Z ** inst 2021-05-17T21:41:36.0935741Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:36.7815089Z ** help 2021-05-17T21:41:36.8399541Z *** installing help indices 2021-05-17T21:41:36.8820161Z ** building package indices 2021-05-17T21:41:37.0973087Z ** installing vignettes 2021-05-17T21:41:37.1062848Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:37.3232572Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:37.3405214Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:37.5628259Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:37.5629441Z * DONE (gert) 2021-05-17T21:41:37.9472266Z * installing *source* package ‘usethis’ ... 2021-05-17T21:41:37.9548580Z ** package ‘usethis’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:37.9549835Z ** using staged installation 2021-05-17T21:41:37.9783712Z ** R 2021-05-17T21:41:38.0107444Z ** inst 2021-05-17T21:41:38.0138930Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:40.5117598Z ** help 2021-05-17T21:41:40.6998482Z *** installing help indices 2021-05-17T21:41:40.8204717Z *** copying figures 2021-05-17T21:41:40.8209545Z ** building package indices 2021-05-17T21:41:41.1161173Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:41.3899432Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:41.7069224Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:41.7101866Z * DONE (usethis) 2021-05-17T21:41:41.7209428Z 2021-05-17T21:41:41.7210252Z The downloaded source packages are in 2021-05-17T21:41:41.7211598Z ‘/tmp/RtmpduAbLy/downloaded_packages’ 2021-05-17T21:41:41.7212273Z Running `R CMD build`... 2021-05-17T21:41:43.7736514Z * checking for file ‘/tmp/RtmpduAbLy/remotes723014c809e6/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-17T21:41:43.7738262Z * preparing ‘tic’: 2021-05-17T21:41:43.7739487Z * checking DESCRIPTION meta-information ... OK 2021-05-17T21:41:43.7740627Z * installing the package to process help pages 2021-05-17T21:41:43.7741972Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:41:43.7743087Z * checking for empty or unneeded directories 2021-05-17T21:41:43.7744229Z Removed empty directory ‘tic/.circleci’ 2021-05-17T21:41:43.7745332Z Removed empty directory ‘tic/pkgdown’ 2021-05-17T21:41:43.7746498Z * building ‘tic_0.10.0.tar.gz’ 2021-05-17T21:41:43.7748885Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:41:43.7750023Z (as ‘lib’ is unspecified) 2021-05-17T21:41:44.1009390Z * installing *source* package ‘tic’ ... 2021-05-17T21:41:44.1036346Z ** using staged installation 2021-05-17T21:41:44.1263320Z ** R 2021-05-17T21:41:44.1446071Z ** inst 2021-05-17T21:41:44.1477574Z ** preparing package for lazy loading 2021-05-17T21:41:44.4899411Z ** help 2021-05-17T21:41:44.6399523Z *** installing help indices 2021-05-17T21:41:44.7319453Z *** copying figures 2021-05-17T21:41:44.7324445Z ** building package indices 2021-05-17T21:41:44.9937823Z ** installing vignettes 2021-05-17T21:41:44.9987407Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:45.2492958Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:45.5422393Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:45.5455311Z * DONE (tic) 2021-05-17T21:41:45.5585592Z Using github PAT from envvar GITHUB_PAT 2021-05-17T21:41:45.7635203Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-17T21:41:46.7659853Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-17T21:41:46.7661120Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-17T21:41:46.7664474Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-17T21:41:46.7667467Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-17T21:41:46.7669288Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:41:46.7670198Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-17T21:41:46.7671632Z (as ‘lib’ is unspecified) 2021-05-17T21:41:46.7672391Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-17T21:41:46.7673362Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-17T21:41:46.7674257Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-17T21:41:46.7675136Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-17T21:41:46.7675990Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-17T21:41:46.7676860Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-17T21:41:46.7677704Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-17T21:41:46.7678551Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-17T21:41:46.7679444Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-17T21:41:46.7680314Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-17T21:41:46.7681189Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-17T21:41:46.7682084Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-17T21:41:46.7682967Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-17T21:41:46.7683809Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-17T21:41:46.7685314Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-17T21:41:46.7686023Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-17T21:41:46.7686704Z xfun (NA -> 0.23 ) [CRAN] 2021-05-17T21:41:46.7687422Z markdown (NA -> 1.1 ) [CRAN] 2021-05-17T21:41:46.7688128Z highr (NA -> 0.9 ) [CRAN] 2021-05-17T21:41:46.7688848Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-17T21:41:46.7689572Z stringi (NA -> 1.6.2 ) [CRAN] 2021-05-17T21:41:46.7690264Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-17T21:41:46.7690973Z knitr (NA -> 1.33 ) [CRAN] 2021-05-17T21:41:46.7691708Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-17T21:41:46.7692422Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-17T21:41:46.7693126Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-17T21:41:46.7693851Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-17T21:41:46.7694636Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-17T21:41:46.7695396Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-17T21:41:46.7696280Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-17T21:41:46.7697048Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-17T21:41:46.7697793Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-17T21:41:46.7698520Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-17T21:41:46.7699269Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-17T21:42:00.8334574Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-17T21:42:02.5720409Z Content type 'binary/octet-stream' length 237667 bytes (232 KB) 2021-05-17T21:42:02.5876304Z ================================================== 2021-05-17T21:42:02.5877328Z downloaded 232 KB 2021-05-17T21:42:02.5877883Z 2021-05-17T21:42:02.5909408Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-17T21:42:02.8529640Z Content type 'binary/octet-stream' length 784938 bytes (766 KB) 2021-05-17T21:42:02.9266803Z ================================================== 2021-05-17T21:42:02.9267423Z downloaded 766 KB 2021-05-17T21:42:02.9267703Z 2021-05-17T21:42:02.9304383Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-17T21:42:03.1994387Z Content type 'application/x-tar' length 6108 bytes 2021-05-17T21:42:03.1995843Z ================================================== 2021-05-17T21:42:03.1997555Z downloaded 6108 bytes 2021-05-17T21:42:03.1997863Z 2021-05-17T21:42:03.2033288Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz' 2021-05-17T21:42:04.3086729Z Content type 'binary/octet-stream' length 1114809 bytes (1.1 MB) 2021-05-17T21:42:04.3373942Z ================================================== 2021-05-17T21:42:04.3374494Z downloaded 1.1 MB 2021-05-17T21:42:04.3374778Z 2021-05-17T21:42:04.3412703Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz' 2021-05-17T21:42:04.7364336Z Content type 'binary/octet-stream' length 689638 bytes (673 KB) 2021-05-17T21:42:04.7643464Z ================================================== 2021-05-17T21:42:04.7644132Z downloaded 673 KB 2021-05-17T21:42:04.7644412Z 2021-05-17T21:42:04.7682801Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-17T21:42:05.3477647Z Content type 'binary/octet-stream' length 13441 bytes (13 KB) 2021-05-17T21:42:05.3479390Z ================================================== 2021-05-17T21:42:05.3480080Z downloaded 13 KB 2021-05-17T21:42:05.3480526Z 2021-05-17T21:42:05.3482162Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.4.2.tar.gz' 2021-05-17T21:42:05.3711325Z Content type 'binary/octet-stream' length 270970 bytes (264 KB) 2021-05-17T21:42:05.3873920Z ================================================== 2021-05-17T21:42:05.3874823Z downloaded 264 KB 2021-05-17T21:42:05.3875417Z 2021-05-17T21:42:05.3911302Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz' 2021-05-17T21:42:05.9967318Z Content type 'binary/octet-stream' length 476003 bytes (464 KB) 2021-05-17T21:42:06.0175121Z ================================================== 2021-05-17T21:42:06.0175661Z downloaded 464 KB 2021-05-17T21:42:06.0175939Z 2021-05-17T21:42:06.0212771Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-05-17T21:42:06.3284507Z Content type 'binary/octet-stream' length 26261 bytes (25 KB) 2021-05-17T21:42:06.3285373Z ================================================== 2021-05-17T21:42:06.3285845Z downloaded 25 KB 2021-05-17T21:42:06.3286163Z 2021-05-17T21:42:06.3335787Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz' 2021-05-17T21:42:06.5828555Z Content type 'binary/octet-stream' length 120042 bytes (117 KB) 2021-05-17T21:42:06.5936105Z ================================================== 2021-05-17T21:42:06.5937618Z downloaded 117 KB 2021-05-17T21:42:06.5938018Z 2021-05-17T21:42:06.5978386Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz' 2021-05-17T21:42:07.0201081Z Content type 'binary/octet-stream' length 141949 bytes (138 KB) 2021-05-17T21:42:07.0318539Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-17T21:42:08.2939864Z Content type 'application/x-tar' length 23661 bytes (23 KB) 2021-05-17T21:42:08.2941160Z ================================================== 2021-05-17T21:42:08.2942263Z downloaded 23 KB 2021-05-17T21:42:08.2942811Z 2021-05-17T21:42:08.2977406Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ellipsis_0.3.2.tar.gz' 2021-05-17T21:42:08.5803595Z Content type 'binary/octet-stream' length 8130 bytes 2021-05-17T21:42:08.5805055Z ================================================== 2021-05-17T21:42:08.5805793Z downloaded 8130 bytes 2021-05-17T21:42:08.5806318Z 2021-05-17T21:42:08.5835253Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/digest_0.6.27.tar.gz' 2021-05-17T21:42:08.8244435Z Content type 'binary/octet-stream' length 164442 bytes (160 KB) 2021-05-17T21:42:08.8367934Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-17T21:42:09.9413913Z Content type 'binary/octet-stream' length 272736 bytes (266 KB) 2021-05-17T21:42:09.9571512Z ================================================== 2021-05-17T21:42:09.9572049Z downloaded 266 KB 2021-05-17T21:42:09.9572312Z 2021-05-17T21:42:09.9610899Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xfun_0.23.tar.gz' 2021-05-17T21:42:10.2810216Z Content type 'binary/octet-stream' length 111996 bytes (109 KB) 2021-05-17T21:42:10.2920050Z ================================================== 2021-05-17T21:42:10.2920566Z downloaded 109 KB 2021-05-17T21:42:10.2920849Z 2021-05-17T21:42:10.2956950Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/markdown_1.1.tar.gz' 2021-05-17T21:42:10.5850069Z Content type 'application/x-tar' length 81636 bytes (79 KB) 2021-05-17T21:42:10.5852466Z 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2021-05-17T21:42:11.1704381Z Content type 'application/x-gzip' length 7575370 bytes (7.2 MB) 2021-05-17T21:42:11.2407624Z ================================================== 2021-05-17T21:42:11.2408171Z downloaded 7.2 MB 2021-05-17T21:42:11.2408451Z 2021-05-17T21:42:11.2437490Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-05-17T21:42:11.6614726Z Content type 'binary/octet-stream' length 2954251 bytes (2.8 MB) 2021-05-17T21:42:11.7310586Z ================================================== 2021-05-17T21:42:11.7311436Z downloaded 2.8 MB 2021-05-17T21:42:11.7311990Z 2021-05-17T21:42:11.7350325Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-05-17T21:42:12.0224357Z Content type 'binary/octet-stream' length 890176 bytes (869 KB) 2021-05-17T21:42:12.1341729Z ================================================== 2021-05-17T21:42:12.1342764Z downloaded 869 KB 2021-05-17T21:42:12.1343320Z 2021-05-17T21:42:12.1378462Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/commonmark_1.7.tar.gz' 2021-05-17T21:42:12.7931299Z Content type 'application/x-tar' length 134376 bytes (131 KB) 2021-05-17T21:42:12.7997462Z ================================================== 2021-05-17T21:42:12.7998013Z downloaded 131 KB 2021-05-17T21:42:12.7998334Z 2021-05-17T21:42:12.8037956Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brew_1.0-6.tar.gz' 2021-05-17T21:42:13.6589997Z Content type 'application/x-tar' length 83765 bytes (81 KB) 2021-05-17T21:42:13.6591579Z ================================================== 2021-05-17T21:42:13.6592348Z downloaded 81 KB 2021-05-17T21:42:13.6592861Z 2021-05-17T21:42:13.6627530Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-05-17T21:42:14.3181935Z Content type 'application/x-tar' length 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgbuild_1.2.0.tar.gz' 2021-05-17T21:42:16.5163978Z Content type 'binary/octet-stream' length 30622 bytes (29 KB) 2021-05-17T21:42:16.5165393Z ================================================== 2021-05-17T21:42:16.5166334Z downloaded 29 KB 2021-05-17T21:42:16.5166713Z 2021-05-17T21:42:16.5208481Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/testthat_3.0.2.tar.gz' 2021-05-17T21:42:16.7106610Z Content type 'binary/octet-stream' length 678280 bytes (662 KB) 2021-05-17T21:42:16.7367397Z ================================================== 2021-05-17T21:42:16.7367970Z downloaded 662 KB 2021-05-17T21:42:16.7368287Z 2021-05-17T21:42:16.7405538Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rversions_2.0.2.tar.gz' 2021-05-17T21:42:17.8949307Z Content type 'binary/octet-stream' length 40913 bytes (39 KB) 2021-05-17T21:42:17.8950821Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-17T21:42:19.2805233Z Content type 'binary/octet-stream' length 370450 bytes (361 KB) 2021-05-17T21:42:19.2997999Z ================================================== 2021-05-17T21:42:19.2998593Z downloaded 361 KB 2021-05-17T21:42:19.2998906Z 2021-05-17T21:42:19.6065391Z * installing *source* package ‘utf8’ ... 2021-05-17T21:42:19.6128607Z ** package ‘utf8’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:19.6129677Z ** using staged installation 2021-05-17T21:42:19.6260113Z ** libs 2021-05-17T21:42:19.6312856Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o 2021-05-17T21:42:19.6938738Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o 2021-05-17T21:42:19.8302585Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o 2021-05-17T21:42:19.8893225Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:19.9299449Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o 2021-05-17T21:42:19.9893477Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o 2021-05-17T21:42:20.1456664Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o 2021-05-17T21:42:20.2070318Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o 2021-05-17T21:42:20.3335805Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o 2021-05-17T21:42:20.4116840Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o 2021-05-17T21:42:20.4977036Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o 2021-05-17T21:42:20.5643435Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o 2021-05-17T21:42:20.6221990Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o 2021-05-17T21:42:20.6839723Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o 2021-05-17T21:42:20.7366671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o 2021-05-17T21:42:20.7897307Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o 2021-05-17T21:42:20.8575363Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o 2021-05-17T21:42:20.9144060Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o 2021-05-17T21:42:20.9528193Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o 2021-05-17T21:42:21.0137068Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o 2021-05-17T21:42:21.0568904Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o 2021-05-17T21:42:21.2529634Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o 2021-05-17T21:42:21.5420386Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o 2021-05-17T21:42:21.7069359Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o 2021-05-17T21:42:21.7740138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o 2021-05-17T21:42:21.8338615Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o 2021-05-17T21:42:21.9028851Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o 2021-05-17T21:42:21.9709574Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o 2021-05-17T21:42:21.9780812Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:22.0087570Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs 2021-05-17T21:42:22.0106649Z ** R 2021-05-17T21:42:22.0191686Z ** inst 2021-05-17T21:42:22.0200783Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:22.4546700Z ** help 2021-05-17T21:42:22.4832176Z *** installing help indices 2021-05-17T21:42:22.5067405Z ** building package indices 2021-05-17T21:42:22.6963609Z ** installing vignettes 2021-05-17T21:42:22.7015599Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:22.8715921Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:22.8892991Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:23.0602309Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:23.0610745Z * DONE (utf8) 2021-05-17T21:42:23.2650072Z * installing *source* package ‘pkgconfig’ ... 2021-05-17T21:42:23.2658480Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:23.2659645Z ** using staged installation 2021-05-17T21:42:23.2768041Z ** R 2021-05-17T21:42:23.2792695Z ** inst 2021-05-17T21:42:23.2800175Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:23.5067167Z ** help 2021-05-17T21:42:23.5252431Z *** installing help indices 2021-05-17T21:42:23.5413164Z ** building package indices 2021-05-17T21:42:23.7264867Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:23.8981453Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:24.0656124Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:24.0661309Z * DONE (pkgconfig) 2021-05-17T21:42:24.3307649Z * installing *source* package ‘fansi’ ... 2021-05-17T21:42:24.3340816Z ** package ‘fansi’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:24.3342033Z ** using staged installation 2021-05-17T21:42:24.3465373Z ** libs 2021-05-17T21:42:24.3549401Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o 2021-05-17T21:42:24.3938028Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o 2021-05-17T21:42:24.4533053Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:24.4971833Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o 2021-05-17T21:42:24.5641033Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o 2021-05-17T21:42:24.9979268Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o 2021-05-17T21:42:25.0351240Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o 2021-05-17T21:42:25.3830483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o 2021-05-17T21:42:25.5168176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o 2021-05-17T21:42:25.5617385Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o 2021-05-17T21:42:25.6812877Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o 2021-05-17T21:42:25.9171596Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o 2021-05-17T21:42:26.0162700Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o 2021-05-17T21:42:26.0703224Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T21:42:26.1280657Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:42:26.2868404Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o 2021-05-17T21:42:26.5858380Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:26.6137351Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs 2021-05-17T21:42:26.6153357Z ** R 2021-05-17T21:42:26.6248045Z ** inst 2021-05-17T21:42:26.6258296Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:27.2257905Z ** help 2021-05-17T21:42:27.2891085Z *** installing help indices 2021-05-17T21:42:27.3258431Z ** building package indices 2021-05-17T21:42:27.5464711Z ** installing vignettes 2021-05-17T21:42:27.5523044Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:27.7286814Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:27.7460376Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:27.9274178Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:27.9282601Z * DONE (fansi) 2021-05-17T21:42:28.3551216Z * installing *source* package ‘diffobj’ ... 2021-05-17T21:42:28.3653315Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:28.3655493Z ** using staged installation 2021-05-17T21:42:28.3798620Z ** libs 2021-05-17T21:42:28.3841938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o 2021-05-17T21:42:28.5786386Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o 2021-05-17T21:42:28.6365679Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:28.6797365Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:28.7028141Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs 2021-05-17T21:42:28.7032145Z ** R 2021-05-17T21:42:28.7415285Z ** inst 2021-05-17T21:42:28.7430100Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:34.5929643Z ** help 2021-05-17T21:42:34.7850565Z *** installing help indices 2021-05-17T21:42:34.9239195Z ** building package indices 2021-05-17T21:42:35.1953344Z ** installing vignettes 2021-05-17T21:42:35.2019009Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:35.4891108Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:35.5063818Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:35.9096425Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:35.9170063Z * DONE (diffobj) 2021-05-17T21:42:36.1968304Z * installing *source* package ‘ps’ ... 2021-05-17T21:42:36.2004638Z ** package ‘ps’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:36.2005814Z ** using staged installation 2021-05-17T21:42:36.3880134Z ** libs 2021-05-17T21:42:36.3930871Z gcc -g -O2 -Wall px.c -o px 2021-05-17T21:42:36.5155941Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:36.5782227Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o 2021-05-17T21:42:36.6406781Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o 2021-05-17T21:42:36.7037243Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o 2021-05-17T21:42:36.8551127Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o 2021-05-17T21:42:36.9053462Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o 2021-05-17T21:42:37.1664232Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o 2021-05-17T21:42:37.3398362Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o 2021-05-17T21:42:37.4377338Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o 2021-05-17T21:42:37.6329636Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o 2021-05-17T21:42:38.0524184Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:38.0790509Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps 2021-05-17T21:42:38.0827497Z ** R 2021-05-17T21:42:38.0930889Z ** inst 2021-05-17T21:42:38.0940353Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:39.0507599Z ** help 2021-05-17T21:42:39.1854481Z *** installing help indices 2021-05-17T21:42:39.2717558Z ** building package indices 2021-05-17T21:42:39.5431983Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:39.7164666Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:39.7334410Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:39.9208560Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:39.9221910Z * DONE (ps) 2021-05-17T21:42:40.1243994Z * installing *source* package ‘praise’ ... 2021-05-17T21:42:40.1252429Z ** package ‘praise’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:40.1253522Z ** using staged installation 2021-05-17T21:42:40.1353264Z ** R 2021-05-17T21:42:40.1391008Z ** inst 2021-05-17T21:42:40.1398827Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:40.3541347Z ** help 2021-05-17T21:42:40.3657890Z *** installing help indices 2021-05-17T21:42:40.3867283Z ** building package indices 2021-05-17T21:42:40.5661045Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:40.7314699Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:40.8954885Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:40.8960281Z * DONE (praise) 2021-05-17T21:42:41.2113708Z * installing *source* package ‘pkgload’ ... 2021-05-17T21:42:41.2158798Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:41.2159929Z ** using staged installation 2021-05-17T21:42:41.2294899Z ** R 2021-05-17T21:42:41.2390267Z ** inst 2021-05-17T21:42:41.2397177Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:42.0226585Z ** help 2021-05-17T21:42:42.0750539Z *** installing help indices 2021-05-17T21:42:42.1174016Z ** building package indices 2021-05-17T21:42:42.3313914Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:42.7701238Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:43.2098082Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:43.2110201Z * DONE (pkgload) 2021-05-17T21:42:43.4440269Z * installing *source* package ‘evaluate’ ... 2021-05-17T21:42:43.4458316Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:43.4459547Z ** using staged installation 2021-05-17T21:42:43.4592193Z ** R 2021-05-17T21:42:43.4642500Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:43.9347015Z ** help 2021-05-17T21:42:43.9609545Z *** installing help indices 2021-05-17T21:42:43.9917734Z ** building package indices 2021-05-17T21:42:44.1865960Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:44.3547340Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:44.5278179Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:44.5286327Z * DONE (evaluate) 2021-05-17T21:42:44.7327468Z * installing *source* package ‘ellipsis’ ... 2021-05-17T21:42:44.7336894Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:44.7337908Z ** using staged installation 2021-05-17T21:42:44.7472397Z ** libs 2021-05-17T21:42:44.7521320Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o 2021-05-17T21:42:44.8223968Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:44.8648886Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:44.8859722Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs 2021-05-17T21:42:44.8874227Z ** R 2021-05-17T21:42:44.8906084Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:45.1432069Z ** help 2021-05-17T21:42:45.1675471Z *** installing help indices 2021-05-17T21:42:45.1863846Z ** building package indices 2021-05-17T21:42:45.3732018Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:45.5597289Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:45.5771734Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:45.7591588Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:45.7597530Z * DONE (ellipsis) 2021-05-17T21:42:46.0131237Z * installing *source* package ‘digest’ ... 2021-05-17T21:42:46.0161026Z ** package ‘digest’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:46.0162098Z ** using staged installation 2021-05-17T21:42:46.0264648Z ** libs 2021-05-17T21:42:46.0319165Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o 2021-05-17T21:42:46.1995188Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-17T21:42:46.4959431Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o 2021-05-17T21:42:47.0051736Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o 2021-05-17T21:42:47.2237885Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o 2021-05-17T21:42:47.7388254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o 2021-05-17T21:42:47.8118352Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o 2021-05-17T21:42:48.0157840Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o 2021-05-17T21:42:48.0703879Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:48.0922334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o 2021-05-17T21:42:48.2275382Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o 2021-05-17T21:42:48.2774137Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o 2021-05-17T21:42:48.3458200Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o 2021-05-17T21:42:48.6284063Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o 2021-05-17T21:42:48.7366433Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o 2021-05-17T21:42:49.2727684Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o 2021-05-17T21:42:49.3814704Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o 2021-05-17T21:42:49.6176167Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:49.6569580Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs 2021-05-17T21:42:49.6589966Z ** R 2021-05-17T21:42:49.6646756Z ** demo 2021-05-17T21:42:49.6652057Z ** inst 2021-05-17T21:42:49.6669156Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:50.1716266Z ** help 2021-05-17T21:42:50.2085437Z *** installing help indices 2021-05-17T21:42:50.2339875Z ** building package indices 2021-05-17T21:42:50.4267140Z ** installing vignettes 2021-05-17T21:42:50.4297099Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:50.6036067Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:50.6214359Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:50.7982342Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:50.7983578Z * DONE (digest) 2021-05-17T21:42:51.0070338Z * installing *source* package ‘brio’ ... 2021-05-17T21:42:51.0085728Z ** package ‘brio’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:51.0086878Z ** using staged installation 2021-05-17T21:42:51.0261708Z ** libs 2021-05-17T21:42:51.0310571Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o 2021-05-17T21:42:51.0674921Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o 2021-05-17T21:42:51.1123671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:51.1541177Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o 2021-05-17T21:42:51.2033777Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o 2021-05-17T21:42:51.2536430Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o 2021-05-17T21:42:51.3310106Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o 2021-05-17T21:42:51.3788548Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o 2021-05-17T21:42:51.4329265Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:51.4554665Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs 2021-05-17T21:42:51.4567633Z ** R 2021-05-17T21:42:51.4599723Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:51.6808805Z ** help 2021-05-17T21:42:51.7000149Z *** installing help indices 2021-05-17T21:42:51.7191863Z ** building package indices 2021-05-17T21:42:51.9043370Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:52.0756072Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:52.0931969Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:52.2620321Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:52.2625959Z * DONE (brio) 2021-05-17T21:42:52.5414307Z * installing *source* package ‘xml2’ ... 2021-05-17T21:42:52.5451675Z ** package ‘xml2’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:52.5452874Z ** using staged installation 2021-05-17T21:42:52.5532881Z Found pkg-config cflags and libs! 2021-05-17T21:42:52.6335885Z Using PKG_CFLAGS=-I/usr/include/libxml2 2021-05-17T21:42:52.6337074Z Using PKG_LIBS=-lxml2 2021-05-17T21:42:52.6891179Z ** libs 2021-05-17T21:42:52.6939660Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o 2021-05-17T21:42:53.1586836Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:53.2034707Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o 2021-05-17T21:42:53.7181720Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o 2021-05-17T21:42:54.1155497Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o 2021-05-17T21:42:54.7712972Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o 2021-05-17T21:42:56.5133591Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o 2021-05-17T21:42:57.0120071Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o 2021-05-17T21:42:57.5528097Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o 2021-05-17T21:42:57.9847814Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o 2021-05-17T21:42:58.8618754Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs 2021-05-17T21:42:58.8620811Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:58.8625140Z ** R 2021-05-17T21:42:58.8625774Z ** inst 2021-05-17T21:42:58.8626897Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:59.3549055Z ** help 2021-05-17T21:42:59.4462362Z *** installing help indices 2021-05-17T21:42:59.4945649Z ** building package indices 2021-05-17T21:42:59.7187040Z ** installing vignettes 2021-05-17T21:42:59.7260222Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:59.9071109Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:59.9256737Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:00.1179559Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:00.1194509Z * DONE (xml2) 2021-05-17T21:43:00.3867198Z * installing *source* package ‘xfun’ ... 2021-05-17T21:43:00.3899130Z ** package ‘xfun’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:00.3900326Z ** using staged installation 2021-05-17T21:43:00.4045705Z ** libs 2021-05-17T21:43:00.4124092Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:43:00.5092487Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:43:00.5529696Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:43:00.5868653Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs 2021-05-17T21:43:00.5869762Z ** R 2021-05-17T21:43:00.6001403Z ** inst 2021-05-17T21:43:00.6012615Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:01.8686014Z ** help 2021-05-17T21:43:02.0086704Z *** installing help indices 2021-05-17T21:43:02.1060296Z ** building package indices 2021-05-17T21:43:02.3747034Z ** installing vignettes 2021-05-17T21:43:02.3813818Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:02.5559989Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:43:02.5729162Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:02.7653481Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:02.7667650Z * DONE (xfun) 2021-05-17T21:43:05.1554808Z * installing *source* package ‘stringi’ ... 2021-05-17T21:43:05.2654918Z ** package ‘stringi’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:05.2656435Z ** using staged installation 2021-05-17T21:43:05.3786673Z checking for R_HOME... /opt/R/devel/lib/R 2021-05-17T21:43:05.3787922Z checking for R... /opt/R/devel/lib/R/bin/R 2021-05-17T21:43:05.5298863Z checking for endianness... little 2021-05-17T21:43:05.6805759Z checking for R >= 3.1.0 for C++11 use... yes 2021-05-17T21:43:05.8311833Z checking for R < 3.4.0 for CXX1X flag use... no 2021-05-17T21:43:05.8315869Z checking for cat... /usr/bin/cat 2021-05-17T21:43:06.0444740Z checking for local ICUDT_DIR... icu69/data 2021-05-17T21:43:06.0445368Z checking for gcc... gcc 2021-05-17T21:43:06.1015913Z checking whether the C compiler works... yes 2021-05-17T21:43:06.1017585Z checking for C compiler default output file name... a.out 2021-05-17T21:43:06.1383540Z checking for suffix of executables... 2021-05-17T21:43:06.1829111Z checking whether we are cross compiling... no 2021-05-17T21:43:06.2057826Z checking for suffix of object files... o 2021-05-17T21:43:06.2264656Z checking whether we are using the GNU C compiler... yes 2021-05-17T21:43:06.2456657Z checking whether gcc accepts -g... yes 2021-05-17T21:43:06.2786877Z checking for gcc option to accept ISO C89... none needed 2021-05-17T21:43:06.2978151Z checking how to run the C preprocessor... gcc -E 2021-05-17T21:43:06.3190773Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-17T21:43:06.3206472Z checking for egrep... /usr/bin/grep -E 2021-05-17T21:43:06.4194812Z checking for ANSI C header files... yes 2021-05-17T21:43:06.4462276Z checking for sys/types.h... yes 2021-05-17T21:43:06.4771042Z checking for sys/stat.h... yes 2021-05-17T21:43:06.5083450Z checking for stdlib.h... yes 2021-05-17T21:43:06.5406906Z checking for string.h... yes 2021-05-17T21:43:06.5729170Z checking for memory.h... yes 2021-05-17T21:43:06.6053717Z checking for strings.h... yes 2021-05-17T21:43:06.6384826Z checking for inttypes.h... yes 2021-05-17T21:43:06.6713853Z checking for stdint.h... yes 2021-05-17T21:43:06.7082474Z checking for unistd.h... yes 2021-05-17T21:43:06.7745356Z checking elf.h usability... yes 2021-05-17T21:43:06.7862419Z checking elf.h presence... yes 2021-05-17T21:43:06.7863024Z checking for elf.h... yes 2021-05-17T21:43:06.8285023Z checking whether we are using the GNU C++ compiler... yes 2021-05-17T21:43:06.8486027Z checking whether g++ -std=gnu++11 accepts -g... yes 2021-05-17T21:43:07.1470107Z checking whether the C++ compiler supports the long long type... yes 2021-05-17T21:43:07.1713862Z checking whether the compiler implements namespaces... yes 2021-05-17T21:43:07.2966486Z checking whether the compiler supports Standard Template Library... yes 2021-05-17T21:43:07.7897445Z checking whether std::map is available... yes 2021-05-17T21:43:07.7918772Z checking for pkg-config... /usr/bin/pkg-config 2021-05-17T21:43:07.8104807Z checking with pkg-config for the system ICU4C... 66.1 2021-05-17T21:43:07.8129851Z checking for ICU4C >= 55... yes 2021-05-17T21:43:07.8197059Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done 2021-05-17T21:43:08.2911801Z checking whether an ICU4C-based project can be built... yes 2021-05-17T21:43:08.3475554Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes 2021-05-17T21:43:08.6114520Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes 2021-05-17T21:43:09.5466542Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes 2021-05-17T21:43:10.1072991Z checking the capabilities of the ICU data library (ucol)... yes 2021-05-17T21:43:10.1427010Z configure: creating ./config.status 2021-05-17T21:43:10.2197358Z config.status: creating src/Makevars 2021-05-17T21:43:10.2359398Z config.status: creating src/uconfig_local.h 2021-05-17T21:43:10.2517132Z config.status: creating src/install.libs.R 2021-05-17T21:43:10.2664242Z 2021-05-17T21:43:10.2665198Z *** stringi configure summary: 2021-05-17T21:43:10.2665788Z ICU_FOUND=1 2021-05-17T21:43:10.2666538Z STRINGI_CXXSTD=CXX_STD=CXX11 2021-05-17T21:43:10.2667711Z STRINGI_CFLAGS= -fpic 2021-05-17T21:43:10.2668638Z STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H 2021-05-17T21:43:10.2669493Z STRINGI_CXXFLAGS= -fpic 2021-05-17T21:43:10.2670914Z STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 2021-05-17T21:43:10.2671764Z STRINGI_LIBS=-licui18n -licuuc -licudata 2021-05-17T21:43:10.2672135Z 2021-05-17T21:43:10.2672584Z *** Compiler settings used: 2021-05-17T21:43:10.2673011Z CC=gcc 2021-05-17T21:43:10.2673530Z LD=g++ -std=gnu++14 2021-05-17T21:43:10.2674841Z CFLAGS=-g -O2 -fpic 2021-05-17T21:43:10.2680809Z CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG 2021-05-17T21:43:10.2681928Z CXX=g++ -std=gnu++11 2021-05-17T21:43:10.2682706Z CXXFLAGS=-g -O2 -fpic 2021-05-17T21:43:10.2683388Z LDFLAGS= 2021-05-17T21:43:10.2683813Z LIBS= 2021-05-17T21:43:10.2684055Z 2021-05-17T21:43:10.3026582Z ** libs 2021-05-17T21:43:10.3112013Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o 2021-05-17T21:43:10.9768135Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o 2021-05-17T21:43:11.5761351Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o 2021-05-17T21:43:12.2008127Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o 2021-05-17T21:43:13.3658114Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o 2021-05-17T21:43:13.3780114Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o 2021-05-17T21:43:14.1791049Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o 2021-05-17T21:43:14.7077898Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o 2021-05-17T21:43:15.2713994Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o 2021-05-17T21:43:15.7950028Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o 2021-05-17T21:43:16.4050840Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o 2021-05-17T21:43:17.0157321Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o 2021-05-17T21:43:17.7105755Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o 2021-05-17T21:43:18.3533288Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o 2021-05-17T21:43:18.9314602Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o 2021-05-17T21:43:19.8432533Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o 2021-05-17T21:43:21.3385655Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o 2021-05-17T21:43:21.9902667Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o 2021-05-17T21:43:22.6331315Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o 2021-05-17T21:43:23.1392552Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o 2021-05-17T21:43:23.6369049Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o 2021-05-17T21:43:24.5257475Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o 2021-05-17T21:43:25.1707495Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o 2021-05-17T21:43:25.7729770Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o 2021-05-17T21:43:26.5219728Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o 2021-05-17T21:43:27.2601739Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o 2021-05-17T21:43:27.8118269Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o 2021-05-17T21:43:28.4232318Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o 2021-05-17T21:43:29.0431043Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o 2021-05-17T21:43:29.8688729Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o 2021-05-17T21:43:30.6747582Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o 2021-05-17T21:43:31.6339898Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o 2021-05-17T21:43:32.4148715Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o 2021-05-17T21:43:33.3721324Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o 2021-05-17T21:43:33.8443282Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o 2021-05-17T21:43:34.4678337Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o 2021-05-17T21:43:35.0843042Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o 2021-05-17T21:43:35.7004670Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o 2021-05-17T21:43:36.3295355Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o 2021-05-17T21:43:37.3732253Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o 2021-05-17T21:43:37.8872350Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o 2021-05-17T21:43:38.7221025Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o 2021-05-17T21:43:39.5235480Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o 2021-05-17T21:43:40.2344802Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o 2021-05-17T21:43:40.9547841Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o 2021-05-17T21:43:41.4855684Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o 2021-05-17T21:43:42.1693838Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o 2021-05-17T21:43:42.8477009Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o 2021-05-17T21:43:43.5272817Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o 2021-05-17T21:43:44.0866534Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o 2021-05-17T21:43:44.6338977Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o 2021-05-17T21:43:45.3573103Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o 2021-05-17T21:43:46.0740688Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o 2021-05-17T21:43:46.8654884Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o 2021-05-17T21:43:47.6052464Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o 2021-05-17T21:43:48.3214722Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o 2021-05-17T21:43:48.9605142Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o 2021-05-17T21:43:48.9753619Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o 2021-05-17T21:43:49.7775555Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o 2021-05-17T21:43:50.3321169Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o 2021-05-17T21:43:50.8821838Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o 2021-05-17T21:43:51.6277442Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o 2021-05-17T21:43:52.3567535Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o 2021-05-17T21:43:53.2459805Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o 2021-05-17T21:43:53.9060722Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o 2021-05-17T21:43:54.6668690Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o 2021-05-17T21:43:55.3183307Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o 2021-05-17T21:43:57.3787916Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o 2021-05-17T21:43:57.4271580Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o 2021-05-17T21:43:57.9750785Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o 2021-05-17T21:43:58.7641844Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o 2021-05-17T21:43:59.2831425Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o 2021-05-17T21:43:59.8492288Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o 2021-05-17T21:44:00.6319900Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o 2021-05-17T21:44:01.4389139Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o 2021-05-17T21:44:02.3735179Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o 2021-05-17T21:44:03.0334319Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o 2021-05-17T21:44:03.7220496Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o 2021-05-17T21:44:04.3230828Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o 2021-05-17T21:44:04.8949132Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o 2021-05-17T21:44:05.4843691Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o 2021-05-17T21:44:05.9899974Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o 2021-05-17T21:44:06.5361525Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o 2021-05-17T21:44:07.8234439Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:44:08.0284233Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi 2021-05-17T21:44:08.1067601Z ** R 2021-05-17T21:44:08.1354751Z ** inst 2021-05-17T21:44:08.1363445Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:44:09.1636328Z ** help 2021-05-17T21:44:09.5912627Z *** installing help indices 2021-05-17T21:44:09.7933928Z ** building package indices 2021-05-17T21:44:10.1845027Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:44:10.3654946Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:44:10.3874770Z ** testing if installed package can be loaded from final location 2021-05-17T21:44:10.5776618Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:44:10.5789121Z * DONE (stringi) 2021-05-17T21:44:11.5046088Z * installing *source* package ‘Rcpp’ ... 2021-05-17T21:44:11.5390799Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked 2021-05-17T21:44:11.5392169Z ** using staged installation 2021-05-17T21:44:11.5497934Z ** libs 2021-05-17T21:44:11.5548845Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o 2021-05-17T21:44:14.4639597Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o 2021-05-17T21:44:29.3828417Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o 2021-05-17T21:44:29.5753760Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o 2021-05-17T21:44:32.7774001Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o 2021-05-17T21:44:38.8927603Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o 2021-05-17T21:44:41.7126482Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:44:41.8773696Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs 2021-05-17T21:44:41.8890591Z ** R 2021-05-17T21:44:41.9021260Z ** inst 2021-05-17T21:44:41.9396636Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:44:43.6166636Z ** help 2021-05-17T21:44:43.7112252Z *** installing help indices 2021-05-17T21:44:43.7723575Z ** building package indices 2021-05-17T21:44:44.0069118Z ** installing vignettes 2021-05-17T21:44:44.0137094Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:44:44.2744876Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:44:44.2971792Z ** testing if installed package can be loaded from final location 2021-05-17T21:44:44.5883259Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:44:44.5964371Z * DONE (Rcpp) 2021-05-17T21:44:44.8796335Z * installing *source* package ‘commonmark’ ... 2021-05-17T21:44:44.8833222Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked 2021-05-17T21:44:44.8834543Z ** using staged installation 2021-05-17T21:44:44.8948980Z ** libs 2021-05-17T21:44:44.9003677Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a 2021-05-17T21:44:44.9040628Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o 2021-05-17T21:44:44.9492040Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:44:44.9885993Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o 2021-05-17T21:44:45.0506229Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o 2021-05-17T21:44:45.0969419Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o 2021-05-17T21:44:45.3607054Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o 2021-05-17T21:44:45.4456451Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o 2021-05-17T21:44:45.8610546Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o 2021-05-17T21:44:46.5430692Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o 2021-05-17T21:44:48.1734571Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o 2021-05-17T21:44:51.2210170Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o 2021-05-17T21:44:51.3388460Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o 2021-05-17T21:44:51.3828131Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o 2021-05-17T21:44:51.4775317Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o 2021-05-17T21:44:51.5583118Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o 2021-05-17T21:44:51.6365752Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o 2021-05-17T21:44:51.8145765Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o 2021-05-17T21:44:51.9986476Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o 2021-05-17T21:44:52.1179312Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o 2021-05-17T21:44:52.1593263Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o 2021-05-17T21:44:52.1998983Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o 2021-05-17T21:44:52.2976917Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o 2021-05-17T21:44:52.3262114Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o 2021-05-17T21:44:52.3827579Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o 2021-05-17T21:44:52.4223055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o 2021-05-17T21:44:52.4574551Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o 2021-05-17T21:44:52.5040536Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o 2021-05-17T21:44:52.5672402Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o 2021-05-17T21:44:52.6579735Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o 2021-05-17T21:44:52.6999193Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o 2021-05-17T21:44:52.7679623Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o 2021-05-17T21:44:52.9282561Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o 2021-05-17T21:44:52.9581609Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o 2021-05-17T21:44:53.0882528Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o 2021-05-17T21:44:53.1637132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o 2021-05-17T21:44:53.4183889Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o 2021-05-17T21:44:53.4693379Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o 2021-05-17T21:44:53.4820669Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:44:53.5268867Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs 2021-05-17T21:44:53.5303591Z ** R 2021-05-17T21:44:53.5328840Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:44:53.7518758Z ** help 2021-05-17T21:44:53.7642550Z *** installing help indices 2021-05-17T21:44:53.7797494Z ** building package indices 2021-05-17T21:44:53.9621547Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:44:54.1342727Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:44:54.1532867Z ** testing if installed package can be loaded from final location 2021-05-17T21:44:54.3178248Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:44:54.3184124Z * DONE (commonmark) 2021-05-17T21:44:54.5515884Z * installing *source* package ‘brew’ ... 2021-05-17T21:44:54.5517570Z ** using staged installation 2021-05-17T21:44:54.5596417Z ** R 2021-05-17T21:44:54.5622967Z ** inst 2021-05-17T21:44:54.5648053Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:44:54.8932765Z ** help 2021-05-17T21:44:54.9069659Z *** installing help indices 2021-05-17T21:44:54.9233703Z ** building package indices 2021-05-17T21:44:55.1062686Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:44:55.2771477Z ** testing if installed package can be loaded from final location 2021-05-17T21:44:55.4461142Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:44:55.4469707Z * DONE (brew) 2021-05-17T21:44:55.6604705Z * installing *source* package ‘sessioninfo’ ... 2021-05-17T21:44:55.6617763Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked 2021-05-17T21:44:55.6618885Z ** using staged installation 2021-05-17T21:44:55.6787735Z ** R 2021-05-17T21:44:55.6825977Z ** inst 2021-05-17T21:44:55.6832274Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:44:56.0953301Z ** help 2021-05-17T21:44:56.1106502Z *** installing help indices 2021-05-17T21:44:56.1279675Z ** building package indices 2021-05-17T21:44:56.3146991Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:44:56.5290367Z ** testing if installed package can be loaded from final location 2021-05-17T21:44:56.7487611Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:44:56.7494171Z * DONE (sessioninfo) 2021-05-17T21:44:56.9489475Z * installing *source* package ‘prettyunits’ ... 2021-05-17T21:44:56.9498936Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked 2021-05-17T21:44:56.9500052Z ** using staged installation 2021-05-17T21:44:56.9603073Z ** R 2021-05-17T21:44:56.9641107Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:44:57.2650565Z ** help 2021-05-17T21:44:57.2909927Z *** installing help indices 2021-05-17T21:44:57.3101998Z ** building package indices 2021-05-17T21:44:57.4995935Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:44:57.6687404Z ** testing if installed package can be loaded from final location 2021-05-17T21:44:57.8355978Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:44:57.8361425Z * DONE (prettyunits) 2021-05-17T21:44:58.3497306Z * installing *source* package ‘vctrs’ ... 2021-05-17T21:44:58.3637321Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked 2021-05-17T21:44:58.3638752Z ** using staged installation 2021-05-17T21:44:58.3808756Z ** libs 2021-05-17T21:44:58.3880860Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o 2021-05-17T21:44:58.4970293Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o 2021-05-17T21:44:58.5778169Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o 2021-05-17T21:44:58.6586528Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o 2021-05-17T21:44:58.8840471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o 2021-05-17T21:44:58.9936450Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o 2021-05-17T21:44:59.1232227Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o 2021-05-17T21:44:59.1827178Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o 2021-05-17T21:44:59.2813915Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o 2021-05-17T21:44:59.3524566Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o 2021-05-17T21:44:59.4783839Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o 2021-05-17T21:44:59.6678924Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o 2021-05-17T21:44:59.7796919Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-17T21:44:59.8619825Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o 2021-05-17T21:45:00.0964883Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o 2021-05-17T21:45:00.1548211Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o 2021-05-17T21:45:00.5207802Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o 2021-05-17T21:45:00.6063670Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o 2021-05-17T21:45:00.7228538Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o 2021-05-17T21:45:00.8355868Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o 2021-05-17T21:45:00.8910608Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o 2021-05-17T21:45:01.1084470Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:01.1675046Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o 2021-05-17T21:45:01.4657421Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o 2021-05-17T21:45:01.5358442Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o 2021-05-17T21:45:02.2097642Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o 2021-05-17T21:45:02.3534814Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o 2021-05-17T21:45:02.4208943Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o 2021-05-17T21:45:02.4892980Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o 2021-05-17T21:45:02.6370455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o 2021-05-17T21:45:02.7398141Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o 2021-05-17T21:45:02.8585034Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o 2021-05-17T21:45:02.9611054Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o 2021-05-17T21:45:03.0866569Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o 2021-05-17T21:45:03.3166631Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o 2021-05-17T21:45:03.4080620Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o 2021-05-17T21:45:03.4850421Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o 2021-05-17T21:45:03.5893716Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o 2021-05-17T21:45:04.0173096Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o 2021-05-17T21:45:04.3477319Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o 2021-05-17T21:45:04.5780023Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o 2021-05-17T21:45:04.7356279Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o 2021-05-17T21:45:04.9934678Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-17T21:45:05.0461180Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o 2021-05-17T21:45:05.2311525Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o 2021-05-17T21:45:05.3674758Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o 2021-05-17T21:45:05.4657908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o 2021-05-17T21:45:05.7961761Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o 2021-05-17T21:45:05.9404274Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o 2021-05-17T21:45:06.0630818Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o 2021-05-17T21:45:06.1605064Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o 2021-05-17T21:45:06.2308007Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o 2021-05-17T21:45:06.3463484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o 2021-05-17T21:45:06.4697608Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o 2021-05-17T21:45:06.5852047Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o 2021-05-17T21:45:06.6811991Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o 2021-05-17T21:45:06.7526768Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o 2021-05-17T21:45:06.8207493Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o 2021-05-17T21:45:06.8719315Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:45:07.4626422Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T21:45:07.5011403Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:07.5572126Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs 2021-05-17T21:45:07.5607052Z ** R 2021-05-17T21:45:07.5936294Z ** inst 2021-05-17T21:45:07.5955527Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:10.1365624Z ** help 2021-05-17T21:45:10.3871988Z *** installing help indices 2021-05-17T21:45:10.5710798Z *** copying figures 2021-05-17T21:45:10.5721126Z ** building package indices 2021-05-17T21:45:10.8828215Z ** installing vignettes 2021-05-17T21:45:10.9006970Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:11.1232482Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:11.1415899Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:11.4118836Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:11.4152054Z * DONE (vctrs) 2021-05-17T21:45:11.6916167Z * installing *source* package ‘processx’ ... 2021-05-17T21:45:11.6951944Z ** package ‘processx’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:11.6953190Z ** using staged installation 2021-05-17T21:45:11.7117563Z ** libs 2021-05-17T21:45:11.7171801Z gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px 2021-05-17T21:45:11.8484704Z gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ 2021-05-17T21:45:11.8486024Z supervisor/utils.c -o supervisor/supervisor 2021-05-17T21:45:12.0149347Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:45:12.0969910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o 2021-05-17T21:45:12.1849643Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o 2021-05-17T21:45:12.2413716Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ 2021-05-17T21:45:12.2415356Z -L"/opt/R/devel/lib/R/lib" -lR 2021-05-17T21:45:12.2636513Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:12.3322294Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o 2021-05-17T21:45:12.4294559Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o 2021-05-17T21:45:12.7515521Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o 2021-05-17T21:45:12.8393297Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o 2021-05-17T21:45:12.9468761Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o 2021-05-17T21:45:13.0373576Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o 2021-05-17T21:45:13.1096195Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o 2021-05-17T21:45:13.4113054Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o 2021-05-17T21:45:13.5043847Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o 2021-05-17T21:45:13.6070998Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o 2021-05-17T21:45:13.6611487Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o 2021-05-17T21:45:13.7293720Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:13.7588656Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx 2021-05-17T21:45:13.7602257Z ** R 2021-05-17T21:45:13.7734038Z ** inst 2021-05-17T21:45:13.7740927Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:15.3253566Z ** help 2021-05-17T21:45:15.3971055Z *** installing help indices 2021-05-17T21:45:15.4389240Z ** building package indices 2021-05-17T21:45:15.6552393Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:15.8436972Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:15.8685726Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:16.0827583Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:16.0828884Z * DONE (processx) 2021-05-17T21:45:16.3283845Z * installing *source* package ‘markdown’ ... 2021-05-17T21:45:16.3307480Z ** package ‘markdown’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:16.3308713Z ** using staged installation 2021-05-17T21:45:16.3455011Z ** libs 2021-05-17T21:45:16.3502092Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o 2021-05-17T21:45:16.4118445Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-05-17T21:45:16.4601787Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o 2021-05-17T21:45:16.6214138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o 2021-05-17T21:45:16.7222924Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o 2021-05-17T21:45:16.7945931Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o 2021-05-17T21:45:16.8334147Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o 2021-05-17T21:45:16.8723963Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o 2021-05-17T21:45:17.0743428Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o 2021-05-17T21:45:17.2051696Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o 2021-05-17T21:45:18.2246850Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o 2021-05-17T21:45:18.2706252Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:18.2988108Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs 2021-05-17T21:45:18.2989221Z ** R 2021-05-17T21:45:18.3034027Z ** inst 2021-05-17T21:45:18.3052019Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:18.7189910Z ** help 2021-05-17T21:45:18.7548470Z *** installing help indices 2021-05-17T21:45:18.7804123Z ** building package indices 2021-05-17T21:45:18.9748848Z ** installing vignettes 2021-05-17T21:45:18.9806154Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:19.1564785Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:19.1740263Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:19.3503981Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:19.3514702Z * DONE (markdown) 2021-05-17T21:45:19.5610762Z * installing *source* package ‘highr’ ... 2021-05-17T21:45:19.5620665Z ** package ‘highr’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:19.5621725Z ** using staged installation 2021-05-17T21:45:19.5768178Z ** R 2021-05-17T21:45:19.5802756Z ** inst 2021-05-17T21:45:19.5812812Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:19.9106918Z ** help 2021-05-17T21:45:19.9199676Z *** installing help indices 2021-05-17T21:45:19.9352273Z ** building package indices 2021-05-17T21:45:20.1175885Z ** installing vignettes 2021-05-17T21:45:20.1225600Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:20.2932305Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:20.4668161Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:20.4674721Z * DONE (highr) 2021-05-17T21:45:20.7353488Z * installing *source* package ‘stringr’ ... 2021-05-17T21:45:20.7386740Z ** package ‘stringr’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:20.7387895Z ** using staged installation 2021-05-17T21:45:20.7549049Z ** R 2021-05-17T21:45:20.7624112Z ** data 2021-05-17T21:45:20.7627940Z *** moving datasets to lazyload DB 2021-05-17T21:45:20.7793731Z ** inst 2021-05-17T21:45:20.7807095Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:21.2711126Z ** help 2021-05-17T21:45:21.3450026Z *** installing help indices 2021-05-17T21:45:21.3970743Z *** copying figures 2021-05-17T21:45:21.3973268Z ** building package indices 2021-05-17T21:45:21.6253703Z ** installing vignettes 2021-05-17T21:45:21.6314551Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:21.8147594Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:21.9991785Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:22.0001300Z * DONE (stringr) 2021-05-17T21:45:22.2077802Z * installing *source* package ‘rversions’ ... 2021-05-17T21:45:22.2088527Z ** package ‘rversions’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:22.2089656Z ** using staged installation 2021-05-17T21:45:22.2225213Z ** R 2021-05-17T21:45:22.2259787Z ** inst 2021-05-17T21:45:22.2266971Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:22.5342733Z ** help 2021-05-17T21:45:22.5525586Z *** installing help indices 2021-05-17T21:45:22.5723539Z *** copying figures 2021-05-17T21:45:22.5726684Z ** building package indices 2021-05-17T21:45:22.7658301Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:22.9629243Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:23.1604940Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:23.1611116Z * DONE (rversions) 2021-05-17T21:45:23.5650190Z * installing *source* package ‘pillar’ ... 2021-05-17T21:45:23.5752433Z ** package ‘pillar’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:23.5756205Z ** using staged installation 2021-05-17T21:45:23.5937697Z ** R 2021-05-17T21:45:23.6111593Z ** inst 2021-05-17T21:45:23.6147216Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:25.3117379Z ** help 2021-05-17T21:45:25.3925775Z *** installing help indices 2021-05-17T21:45:25.4527402Z *** copying figures 2021-05-17T21:45:25.4531400Z ** building package indices 2021-05-17T21:45:25.6830296Z ** installing vignettes 2021-05-17T21:45:25.6914185Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:25.9746976Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:26.2842113Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:26.2866635Z * DONE (pillar) 2021-05-17T21:45:26.5425005Z * installing *source* package ‘callr’ ... 2021-05-17T21:45:26.5452105Z ** package ‘callr’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:26.5453286Z ** using staged installation 2021-05-17T21:45:26.5589039Z ** R 2021-05-17T21:45:26.5717944Z ** inst 2021-05-17T21:45:26.5725488Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:29.7247858Z ** help 2021-05-17T21:45:29.8418113Z *** installing help indices 2021-05-17T21:45:29.9131700Z ** building package indices 2021-05-17T21:45:30.1590487Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:30.3568054Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:30.6132781Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:30.6163410Z * DONE (callr) 2021-05-17T21:45:31.0696731Z * installing *source* package ‘knitr’ ... 2021-05-17T21:45:31.0805810Z ** package ‘knitr’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:31.0807111Z ** using staged installation 2021-05-17T21:45:31.1145795Z ** R 2021-05-17T21:45:31.1510316Z ** demo 2021-05-17T21:45:31.1516422Z ** inst 2021-05-17T21:45:31.1615408Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:35.3275523Z ** help 2021-05-17T21:45:35.5130712Z *** installing help indices 2021-05-17T21:45:35.6383535Z ** building package indices 2021-05-17T21:45:35.9269194Z ** installing vignettes 2021-05-17T21:45:35.9354192Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:36.1272505Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:36.4096754Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:36.4147641Z * DONE (knitr) 2021-05-17T21:45:36.6231617Z * installing *source* package ‘xopen’ ... 2021-05-17T21:45:36.6240060Z ** package ‘xopen’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:36.6241180Z ** using staged installation 2021-05-17T21:45:36.6384189Z ** R 2021-05-17T21:45:36.6407993Z ** inst 2021-05-17T21:45:36.6415075Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:36.8787016Z ** help 2021-05-17T21:45:36.8886214Z *** installing help indices 2021-05-17T21:45:36.9104463Z ** building package indices 2021-05-17T21:45:37.0973535Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:37.2709137Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:37.4433768Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:37.4439404Z * DONE (xopen) 2021-05-17T21:45:37.8502667Z * installing *source* package ‘tibble’ ... 2021-05-17T21:45:37.8597144Z ** package ‘tibble’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:37.8598499Z ** using staged installation 2021-05-17T21:45:37.8800355Z ** libs 2021-05-17T21:45:37.8848997Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o 2021-05-17T21:45:37.9297189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-17T21:45:37.9919128Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:38.0286985Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o 2021-05-17T21:45:38.1235602Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:38.1468053Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs 2021-05-17T21:45:38.1469281Z ** R 2021-05-17T21:45:38.1625932Z ** inst 2021-05-17T21:45:38.1657144Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:39.9804129Z ** help 2021-05-17T21:45:40.0521412Z *** installing help indices 2021-05-17T21:45:40.1008029Z *** copying figures 2021-05-17T21:45:40.1012706Z ** building package indices 2021-05-17T21:45:40.3267812Z ** installing vignettes 2021-05-17T21:45:40.3344467Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:40.6794943Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:40.6967725Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:41.0546306Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:41.0569986Z * DONE (tibble) 2021-05-17T21:45:41.3014170Z * installing *source* package ‘pkgbuild’ ... 2021-05-17T21:45:41.3034133Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:41.3035354Z ** using staged installation 2021-05-17T21:45:41.3179092Z ** R 2021-05-17T21:45:41.3257017Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:42.4947017Z ** help 2021-05-17T21:45:42.5280615Z *** installing help indices 2021-05-17T21:45:42.5622821Z ** building package indices 2021-05-17T21:45:42.7669316Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:43.0169369Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:43.2830161Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:43.2842190Z * DONE (pkgbuild) 2021-05-17T21:45:43.6587297Z * installing *source* package ‘roxygen2’ ... 2021-05-17T21:45:43.6658568Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:43.6659968Z ** using staged installation 2021-05-17T21:45:43.6846844Z ** libs 2021-05-17T21:45:43.6899091Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-17T21:45:48.0664474Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o 2021-05-17T21:45:50.9396311Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o 2021-05-17T21:45:53.8277211Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o 2021-05-17T21:45:56.7276089Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o 2021-05-17T21:46:01.3373768Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o 2021-05-17T21:46:04.3604544Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:46:04.4552361Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs 2021-05-17T21:46:04.4594264Z ** R 2021-05-17T21:46:04.4883365Z ** inst 2021-05-17T21:46:04.4900586Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:46:08.2360667Z ** help 2021-05-17T21:46:08.3059151Z *** installing help indices 2021-05-17T21:46:08.3571370Z *** copying figures 2021-05-17T21:46:08.3573347Z ** building package indices 2021-05-17T21:46:08.5827148Z ** installing vignettes 2021-05-17T21:46:08.5915965Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:46:08.9275504Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:46:08.9465260Z ** testing if installed package can be loaded from final location 2021-05-17T21:46:09.3489949Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:46:09.3531310Z * DONE (roxygen2) 2021-05-17T21:46:09.5657833Z * installing *source* package ‘rematch2’ ... 2021-05-17T21:46:09.5668682Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked 2021-05-17T21:46:09.5669789Z ** using staged installation 2021-05-17T21:46:09.5801323Z ** R 2021-05-17T21:46:09.5841264Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:46:10.0526862Z ** help 2021-05-17T21:46:10.0812748Z *** installing help indices 2021-05-17T21:46:10.1020534Z ** building package indices 2021-05-17T21:46:10.2940783Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:46:10.6287950Z ** testing if installed package can be loaded from final location 2021-05-17T21:46:10.9643699Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:46:10.9649827Z * DONE (rematch2) 2021-05-17T21:46:11.2142793Z * installing *source* package ‘rcmdcheck’ ... 2021-05-17T21:46:11.2165439Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2021-05-17T21:46:11.2166723Z ** using staged installation 2021-05-17T21:46:11.2296624Z ** R 2021-05-17T21:46:11.2369208Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:46:12.4066967Z ** help 2021-05-17T21:46:12.4378092Z *** installing help indices 2021-05-17T21:46:12.4656654Z ** building package indices 2021-05-17T21:46:12.6668750Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:46:12.9367241Z ** testing if installed package can be loaded from final location 2021-05-17T21:46:13.2165803Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:46:13.2178460Z * DONE (rcmdcheck) 2021-05-17T21:46:13.4504209Z * installing *source* package ‘waldo’ ... 2021-05-17T21:46:13.4522326Z ** package ‘waldo’ successfully unpacked and MD5 sums checked 2021-05-17T21:46:13.4523523Z ** using staged installation 2021-05-17T21:46:13.4654949Z ** R 2021-05-17T21:46:13.4708363Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:46:14.1357476Z ** help 2021-05-17T21:46:14.1495593Z *** installing help indices 2021-05-17T21:46:14.1666383Z *** copying figures 2021-05-17T21:46:14.1668612Z ** building package indices 2021-05-17T21:46:14.3513242Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:46:14.5824969Z ** testing if installed package can be loaded from final location 2021-05-17T21:46:14.8195563Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:46:14.8203720Z * DONE (waldo) 2021-05-17T21:46:15.3000607Z * installing *source* package ‘testthat’ ... 2021-05-17T21:46:15.3118324Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2021-05-17T21:46:15.3120410Z ** using staged installation 2021-05-17T21:46:15.3329424Z ** libs 2021-05-17T21:46:15.3378300Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:46:15.3817181Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-17T21:46:15.4301706Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o 2021-05-17T21:46:16.1617122Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o 2021-05-17T21:46:16.7356846Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o 2021-05-17T21:46:32.6693988Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:46:32.8321085Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs 2021-05-17T21:46:32.8427417Z ** R 2021-05-17T21:46:32.8770404Z ** inst 2021-05-17T21:46:32.8803177Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:46:42.7091604Z ** help 2021-05-17T21:46:42.9218114Z *** installing help indices 2021-05-17T21:46:43.1053759Z *** copying figures 2021-05-17T21:46:43.1058419Z ** building package indices 2021-05-17T21:46:43.4227181Z ** installing vignettes 2021-05-17T21:46:43.4346839Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:46:43.6464880Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:46:43.6703473Z ** testing if installed package can be loaded from final location 2021-05-17T21:46:44.1160867Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:46:44.1244792Z * DONE (testthat) 2021-05-17T21:46:44.4827599Z * installing *source* package ‘devtools’ ... 2021-05-17T21:46:44.4882382Z ** package ‘devtools’ successfully unpacked and MD5 sums checked 2021-05-17T21:46:44.4883662Z ** using staged installation 2021-05-17T21:46:44.5160048Z ** R 2021-05-17T21:46:44.5287832Z ** inst 2021-05-17T21:46:44.5297673Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:46:46.3122721Z ** help 2021-05-17T21:46:46.4196098Z *** installing help indices 2021-05-17T21:46:46.4932676Z *** copying figures 2021-05-17T21:46:46.4934122Z ** building package indices 2021-05-17T21:46:46.7407898Z ** installing vignettes 2021-05-17T21:46:46.7473396Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:46:47.4156344Z ** testing if installed package can be loaded from final location 2021-05-17T21:46:48.1216019Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:46:48.1239338Z * DONE (devtools) 2021-05-17T21:46:48.1359549Z 2021-05-17T21:46:48.1360487Z The downloaded source packages are in 2021-05-17T21:46:48.1361857Z ‘/tmp/RtmpduAbLy/downloaded_packages’ 2021-05-17T21:46:48.2300988Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-17T21:46:48.9593842Z 2021-05-17T21:46:49.2487591Z 2021-05-17T21:46:49.2495647Z checking for file ‘/tmp/RtmpduAbLy/remotes72303aee4cde/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-17T21:46:49.2557009Z 2021-05-17T21:46:49.2559663Z ✔ checking for file ‘/tmp/RtmpduAbLy/remotes72303aee4cde/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-17T21:46:49.2584983Z 2021-05-17T21:46:49.2619055Z 2021-05-17T21:46:49.2620381Z ─ preparing ‘desc’: 2021-05-17T21:46:49.2620937Z 2021-05-17T21:46:49.2621402Z 2021-05-17T21:46:49.2712758Z checking DESCRIPTION meta-information ... 2021-05-17T21:46:49.2737005Z 2021-05-17T21:46:49.2739105Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:46:49.3370911Z 2021-05-17T21:46:49.3549689Z 2021-05-17T21:46:49.3552310Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:46:49.3562888Z 2021-05-17T21:46:49.3587954Z 2021-05-17T21:46:49.3589973Z ─ checking for empty or unneeded directories 2021-05-17T21:46:49.3592861Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T21:46:49.3615288Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-17T21:46:49.4526926Z 2021-05-17T21:46:49.4530268Z 2021-05-17T21:46:49.4531781Z 2021-05-17T21:46:49.4631596Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:46:49.4632449Z (as ‘lib’ is unspecified) 2021-05-17T21:46:49.7563013Z * installing *source* package ‘desc’ ... 2021-05-17T21:46:49.7591045Z ** using staged installation 2021-05-17T21:46:49.7751313Z ** R 2021-05-17T21:46:49.7876280Z ** inst 2021-05-17T21:46:49.7891563Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:46:51.3219423Z ** help 2021-05-17T21:46:51.4475421Z *** installing help indices 2021-05-17T21:46:51.5356401Z ** building package indices 2021-05-17T21:46:51.8008878Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:46:51.9852643Z ** testing if installed package can be loaded from final location 2021-05-17T21:46:52.1930923Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:46:52.1947157Z * DONE (desc) 2021-05-17T21:46:52.3866997Z 2021-05-17T21:46:52.3867858Z 2021-05-17T21:46:52.3878785Z checking for file ‘/tmp/RtmpduAbLy/remotes723055aee86/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-17T21:46:52.3880174Z 2021-05-17T21:46:52.3885492Z checking for file ‘/tmp/RtmpduAbLy/remotes723055aee86/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-17T21:46:52.3911808Z 2021-05-17T21:46:52.3913576Z ✔ checking for file ‘/tmp/RtmpduAbLy/remotes723055aee86/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-17T21:46:52.3986614Z 2021-05-17T21:46:52.4006472Z 2021-05-17T21:46:52.4007614Z ─ preparing ‘ghtravis’: 2021-05-17T21:46:52.4012821Z 2021-05-17T21:46:52.4013409Z 2021-05-17T21:46:52.4097063Z checking DESCRIPTION meta-information ... 2021-05-17T21:46:52.4120077Z 2021-05-17T21:46:52.4121272Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:46:52.4485689Z 2021-05-17T21:46:52.4513134Z 2021-05-17T21:46:52.4514773Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:46:52.4520949Z 2021-05-17T21:46:52.4544479Z 2021-05-17T21:46:52.4545707Z ─ checking for empty or unneeded directories 2021-05-17T21:46:52.4547071Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T21:46:52.4647820Z 2021-05-17T21:46:52.4671461Z 2021-05-17T21:46:52.4672671Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-17T21:46:52.4877262Z 2021-05-17T21:46:52.4878208Z 2021-05-17T21:46:52.4878682Z 2021-05-17T21:46:52.5246747Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:46:52.5248210Z (as ‘lib’ is unspecified) 2021-05-17T21:46:52.7567294Z * installing *source* package ‘ghtravis’ ... 2021-05-17T21:46:52.7568881Z ** using staged installation 2021-05-17T21:46:52.7712651Z ** R 2021-05-17T21:46:52.7796128Z ** inst 2021-05-17T21:46:52.7804804Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:46:54.0323332Z ** help 2021-05-17T21:46:54.0896628Z *** installing help indices 2021-05-17T21:46:54.1319933Z ** building package indices 2021-05-17T21:46:54.3581476Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:46:55.0343512Z ** testing if installed package can be loaded from final location 2021-05-17T21:46:55.7194947Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:46:55.7205068Z * DONE (ghtravis) 2021-05-17T21:46:55.7294367Z Using github PAT from envvar GITHUB_PAT 2021-05-17T21:46:55.8899038Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-17T21:46:56.9175100Z 2021-05-17T21:46:56.9177299Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-17T21:46:56.9178389Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-17T21:46:56.9179828Z generics (NA -> 0.1.0) [CRAN] 2021-05-17T21:46:56.9180787Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-17T21:46:56.9181689Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-17T21:46:56.9182591Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-17T21:46:56.9187380Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:46:56.9188512Z (as ‘lib’ is unspecified) 2021-05-17T21:47:11.6084412Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-17T21:47:11.9983285Z Content type 'binary/octet-stream' length 92124 bytes (89 KB) 2021-05-17T21:47:12.0074688Z ================================================== 2021-05-17T21:47:12.0075468Z downloaded 89 KB 2021-05-17T21:47:12.0075783Z 2021-05-17T21:47:12.0118882Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-17T21:47:12.4161448Z Content type 'binary/octet-stream' length 118869 bytes (116 KB) 2021-05-17T21:47:12.4214805Z ================================================== 2021-05-17T21:47:12.4215368Z downloaded 116 KB 2021-05-17T21:47:12.4215685Z 2021-05-17T21:47:12.4257743Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-17T21:47:12.7090953Z Content type 'binary/octet-stream' length 200157 bytes (195 KB) 2021-05-17T21:47:12.7230563Z ================================================== 2021-05-17T21:47:12.7231507Z downloaded 195 KB 2021-05-17T21:47:12.7232061Z 2021-05-17T21:47:12.7268543Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-17T21:47:13.0892958Z Content type 'binary/octet-stream' length 954544 bytes (932 KB) 2021-05-17T21:47:13.1163348Z ================================================== 2021-05-17T21:47:13.1164417Z downloaded 932 KB 2021-05-17T21:47:13.1164948Z 2021-05-17T21:47:13.1200600Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-17T21:47:13.5072261Z Content type 'binary/octet-stream' length 706784 bytes (690 KB) 2021-05-17T21:47:13.5310205Z ================================================== 2021-05-17T21:47:13.5310813Z downloaded 690 KB 2021-05-17T21:47:13.5311090Z 2021-05-17T21:47:13.7931470Z * installing *source* package ‘tidyselect’ ... 2021-05-17T21:47:13.7962521Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:13.7963732Z ** using staged installation 2021-05-17T21:47:13.8121372Z ** R 2021-05-17T21:47:13.8207565Z ** inst 2021-05-17T21:47:13.8219849Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:14.7707029Z ** help 2021-05-17T21:47:14.8248002Z *** installing help indices 2021-05-17T21:47:14.8643271Z ** building package indices 2021-05-17T21:47:15.0747122Z ** installing vignettes 2021-05-17T21:47:15.0789794Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:15.3281859Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:15.5839263Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:15.5850758Z * DONE (tidyselect) 2021-05-17T21:47:15.8511741Z * installing *source* package ‘generics’ ... 2021-05-17T21:47:15.8541007Z ** package ‘generics’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:15.8542265Z ** using staged installation 2021-05-17T21:47:15.8669837Z ** R 2021-05-17T21:47:15.8720410Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:16.1643354Z ** help 2021-05-17T21:47:16.2784461Z *** installing help indices 2021-05-17T21:47:16.3215170Z ** building package indices 2021-05-17T21:47:16.5492754Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:16.7234845Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:16.8973062Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:16.8978895Z * DONE (generics) 2021-05-17T21:47:17.1618162Z * installing *source* package ‘cpp11’ ... 2021-05-17T21:47:17.1651778Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:17.1652992Z ** using staged installation 2021-05-17T21:47:17.1802140Z ** R 2021-05-17T21:47:17.1843461Z ** inst 2021-05-17T21:47:17.1871436Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:17.5667113Z ** help 2021-05-17T21:47:17.5844414Z *** installing help indices 2021-05-17T21:47:17.6020264Z ** building package indices 2021-05-17T21:47:17.7907090Z ** installing vignettes 2021-05-17T21:47:17.7909403Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:17.9613399Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:18.1358988Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:18.1368682Z * DONE (cpp11) 2021-05-17T21:47:18.6151275Z * installing *source* package ‘dplyr’ ... 2021-05-17T21:47:18.6277619Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:18.6278883Z ** using staged installation 2021-05-17T21:47:18.6490812Z ** libs 2021-05-17T21:47:18.6539269Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o 2021-05-17T21:47:18.7856626Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o 2021-05-17T21:47:18.9445901Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o 2021-05-17T21:47:19.0663220Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o 2021-05-17T21:47:19.5767282Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o 2021-05-17T21:47:19.6782739Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o 2021-05-17T21:47:19.7843718Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-17T21:47:19.8905192Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o 2021-05-17T21:47:20.0143105Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o 2021-05-17T21:47:20.1325910Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o 2021-05-17T21:47:20.2240429Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o 2021-05-17T21:47:20.3813856Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:47:20.4424583Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs 2021-05-17T21:47:20.4443437Z ** R 2021-05-17T21:47:20.4871258Z ** data 2021-05-17T21:47:20.4876846Z *** moving datasets to lazyload DB 2021-05-17T21:47:20.5773934Z ** inst 2021-05-17T21:47:20.5800440Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:24.9405951Z ** help 2021-05-17T21:47:25.4241563Z *** installing help indices 2021-05-17T21:47:25.6644239Z *** copying figures 2021-05-17T21:47:25.6649524Z ** building package indices 2021-05-17T21:47:26.0132592Z ** installing vignettes 2021-05-17T21:47:26.0259776Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:26.4960384Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:47:26.5139013Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:27.0654786Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:27.0703836Z * DONE (dplyr) 2021-05-17T21:47:27.4316091Z * installing *source* package ‘tidyr’ ... 2021-05-17T21:47:27.4389477Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:27.4390841Z ** using staged installation 2021-05-17T21:47:27.4570894Z ** libs 2021-05-17T21:47:27.4634570Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o 2021-05-17T21:47:28.4073847Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o 2021-05-17T21:47:28.7345705Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o 2021-05-17T21:47:30.3600701Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o 2021-05-17T21:47:31.5968997Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:47:31.6788383Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs 2021-05-17T21:47:31.6799142Z ** R 2021-05-17T21:47:31.6952024Z ** data 2021-05-17T21:47:31.6963364Z *** moving datasets to lazyload DB 2021-05-17T21:47:31.8770392Z ** inst 2021-05-17T21:47:31.8792088Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:33.5759788Z ** help 2021-05-17T21:47:33.6899736Z *** installing help indices 2021-05-17T21:47:33.7638273Z *** copying figures 2021-05-17T21:47:33.7643509Z ** building package indices 2021-05-17T21:47:34.0107293Z ** installing vignettes 2021-05-17T21:47:34.0220151Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:34.4957467Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:47:34.5136103Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:34.9984053Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:35.0003637Z * DONE (tidyr) 2021-05-17T21:47:35.0107205Z 2021-05-17T21:47:35.0108269Z The downloaded source packages are in 2021-05-17T21:47:35.0109639Z ‘/tmp/RtmpduAbLy/downloaded_packages’ 2021-05-17T21:47:35.1896455Z 2021-05-17T21:47:35.1901688Z checking for file ‘/tmp/RtmpduAbLy/remotes72303b30d1ef/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-17T21:47:35.1902827Z 2021-05-17T21:47:35.1909858Z checking for file ‘/tmp/RtmpduAbLy/remotes72303b30d1ef/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-17T21:47:35.1946709Z 2021-05-17T21:47:35.1949046Z ✔ checking for file ‘/tmp/RtmpduAbLy/remotes72303b30d1ef/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-17T21:47:35.2043313Z 2021-05-17T21:47:35.2044043Z 2021-05-17T21:47:35.2044963Z ─ preparing ‘aghast’: 2021-05-17T21:47:35.2045393Z 2021-05-17T21:47:35.2045812Z 2021-05-17T21:47:35.2113963Z checking DESCRIPTION meta-information ... 2021-05-17T21:47:35.2137453Z 2021-05-17T21:47:35.2139602Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:47:35.2371485Z 2021-05-17T21:47:35.2399032Z 2021-05-17T21:47:35.2401573Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:47:35.2410893Z 2021-05-17T21:47:35.2435502Z 2021-05-17T21:47:35.2437656Z ─ checking for empty or unneeded directories 2021-05-17T21:47:35.2440894Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T21:47:35.2449107Z 2021-05-17T21:47:35.2472751Z 2021-05-17T21:47:35.2474654Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-17T21:47:35.2551340Z 2021-05-17T21:47:35.2553368Z 2021-05-17T21:47:35.2554650Z 2021-05-17T21:47:35.2627102Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:47:35.2628084Z (as ‘lib’ is unspecified) 2021-05-17T21:47:35.4604286Z * installing *source* package ‘aghast’ ... 2021-05-17T21:47:35.4606066Z ** using staged installation 2021-05-17T21:47:35.4760534Z ** R 2021-05-17T21:47:35.4813248Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:35.9043938Z ** help 2021-05-17T21:47:35.9340699Z *** installing help indices 2021-05-17T21:47:35.9555050Z ** building package indices 2021-05-17T21:47:36.1462555Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:36.3191644Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:36.4959552Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:36.4965977Z * DONE (aghast) 2021-05-17T21:47:36.5055912Z Installing 1 packages: covr 2021-05-17T21:47:36.5065255Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:47:36.5066157Z (as ‘lib’ is unspecified) 2021-05-17T21:47:51.0624840Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-17T21:47:51.0625975Z 2021-05-17T21:47:51.0632295Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-17T21:47:51.4475762Z Content type 'application/x-tar' length 83462 bytes (81 KB) 2021-05-17T21:47:51.4540046Z ================================================== 2021-05-17T21:47:51.4540915Z downloaded 81 KB 2021-05-17T21:47:51.4541471Z 2021-05-17T21:47:51.4577543Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-17T21:47:51.9746806Z Content type 'binary/octet-stream' length 91701 bytes (89 KB) 2021-05-17T21:47:51.9815696Z ================================================== 2021-05-17T21:47:51.9816224Z downloaded 89 KB 2021-05-17T21:47:51.9816505Z 2021-05-17T21:47:51.9859228Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-17T21:47:52.2407115Z Content type 'binary/octet-stream' length 147467 bytes (144 KB) 2021-05-17T21:47:52.2514937Z ================================================== 2021-05-17T21:47:52.2515584Z downloaded 144 KB 2021-05-17T21:47:52.2515861Z 2021-05-17T21:47:52.9477089Z * installing *source* package ‘lazyeval’ ... 2021-05-17T21:47:52.9477629Z 2021-05-17T21:47:52.9487093Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:52.9488483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o 2021-05-17T21:47:52.9490167Z ** using staged installation 2021-05-17T21:47:52.9491380Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:47:52.9492765Z ** libs 2021-05-17T21:47:52.9493926Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o 2021-05-17T21:47:52.9495981Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs 2021-05-17T21:47:52.9497369Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o 2021-05-17T21:47:52.9498725Z ** R 2021-05-17T21:47:52.9499690Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o 2021-05-17T21:47:52.9501155Z ** inst 2021-05-17T21:47:52.9502142Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:47:52.9503788Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:52.9505124Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:47:53.3852974Z ** help 2021-05-17T21:47:53.4384368Z *** installing help indices 2021-05-17T21:47:53.4811251Z ** building package indices 2021-05-17T21:47:53.7002720Z ** installing vignettes 2021-05-17T21:47:53.7067737Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:53.8795161Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:47:53.8968490Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:54.0743094Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:54.0752587Z * DONE (lazyeval) 2021-05-17T21:47:54.3218891Z * installing *source* package ‘rex’ ... 2021-05-17T21:47:54.3241872Z ** package ‘rex’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:54.3243046Z ** using staged installation 2021-05-17T21:47:54.3378459Z ** R 2021-05-17T21:47:54.3431892Z ** inst 2021-05-17T21:47:54.3442538Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:54.8248117Z ** help 2021-05-17T21:47:54.8737684Z *** installing help indices 2021-05-17T21:47:54.9099671Z ** building package indices 2021-05-17T21:47:55.1187106Z ** installing vignettes 2021-05-17T21:47:55.1271964Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:55.3002567Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:55.4795002Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:55.4802493Z * DONE (rex) 2021-05-17T21:47:55.8228329Z * installing *source* package ‘covr’ ... 2021-05-17T21:47:55.8284446Z ** package ‘covr’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:55.8285660Z ** using staged installation 2021-05-17T21:47:55.8488340Z ** libs 2021-05-17T21:47:55.8535241Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-17T21:47:55.9060952Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:47:55.9214545Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs 2021-05-17T21:47:55.9227368Z ** R 2021-05-17T21:47:55.9358531Z ** inst 2021-05-17T21:47:55.9379728Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:57.2118064Z ** help 2021-05-17T21:47:57.2719971Z *** installing help indices 2021-05-17T21:47:57.3193018Z *** copying figures 2021-05-17T21:47:57.3194441Z ** building package indices 2021-05-17T21:47:57.5427182Z ** installing vignettes 2021-05-17T21:47:57.5474282Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:57.7417265Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:47:57.7592572Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:57.9748203Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:57.9749457Z * DONE (covr) 2021-05-17T21:47:57.9815466Z 2021-05-17T21:47:57.9817776Z The downloaded source packages are in 2021-05-17T21:47:57.9819362Z ‘/tmp/RtmpduAbLy/downloaded_packages’ 2021-05-17T21:47:57.9980718Z ##[group]Run Rscript -e "tic::before_install()" 2021-05-17T21:47:57.9981326Z Rscript -e "tic::before_install()" 2021-05-17T21:47:58.0024181Z shell: /usr/bin/bash -e {0} 2021-05-17T21:47:58.0024550Z env: 2021-05-17T21:47:58.0024989Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:47:58.0025428Z TIC_DEPLOY_KEY: 2021-05-17T21:47:58.0026910Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:47:58.0028480Z GITHUB_PAT: *** 2021-05-17T21:47:58.0029326Z COVERALLS_TOKEN: *** 2021-05-17T21:47:58.0029799Z continue-on-error: true 2021-05-17T21:47:58.0030251Z VDIFFR_RUN_TESTS: 2021-05-17T21:47:58.0030699Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:47:58.0031129Z TZ: UTC 2021-05-17T21:47:58.0031486Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:47:58.0031879Z NOT_CRAN: true 2021-05-17T21:47:58.0032238Z ##[endgroup] 2021-05-17T21:47:58.2611007Z ✔ Loading tic stage configuration from tic.R 2021-05-17T21:47:58.3868678Z Running before_install: step_install_remote_binaries() 2021-05-17T21:47:58.9103555Z Installing MNITemplate binaries 2021-05-17T21:47:58.9113946Z [1] "neuroconductor/MNITemplate" 2021-05-17T21:47:59.1154245Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T21:47:59.1161508Z Installing neurobase binaries 2021-05-17T21:47:59.1168876Z [1] "neuroconductor/neurobase" 2021-05-17T21:47:59.2510980Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T21:47:59.2631572Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-17T21:47:59.2632321Z remotes::install_deps(dependencies = TRUE) 2021-05-17T21:47:59.2632898Z remotes::install_cran("rcmdcheck") 2021-05-17T21:47:59.2633429Z remotes::install_cran("markdown") 2021-05-17T21:47:59.2640175Z shell: /usr/local/bin/Rscript {0} 2021-05-17T21:47:59.2640581Z env: 2021-05-17T21:47:59.2641009Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:47:59.2641570Z TIC_DEPLOY_KEY: 2021-05-17T21:47:59.2642363Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:47:59.2643833Z GITHUB_PAT: *** 2021-05-17T21:47:59.2644679Z COVERALLS_TOKEN: *** 2021-05-17T21:47:59.2645153Z continue-on-error: true 2021-05-17T21:47:59.2645614Z VDIFFR_RUN_TESTS: 2021-05-17T21:47:59.2646069Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:47:59.2646501Z TZ: UTC 2021-05-17T21:47:59.2646861Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:47:59.2647289Z NOT_CRAN: true 2021-05-17T21:47:59.2647655Z ##[endgroup] 2021-05-17T21:48:17.2161450Z MNITemplate (NA -> ef27207f4...) [GitHub] 2021-05-17T21:48:17.2163011Z neurobase (NA -> 1d4b17291...) [GitHub] 2021-05-17T21:48:17.2164115Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-17T21:48:17.2165139Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-17T21:48:17.2166102Z R.oo (NA -> 1.24.0 ) [CRAN] 2021-05-17T21:48:17.2167027Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-17T21:48:17.2168027Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-17T21:48:17.2168943Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-17T21:48:17.2169877Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-17T21:48:17.2170823Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-17T21:48:17.2171758Z R.utils (NA -> 2.10.1 ) [CRAN] 2021-05-17T21:48:17.2172724Z matrixStats (NA -> 0.58.0 ) [CRAN] 2021-05-17T21:48:17.2173781Z oro.nifti (NA -> 0.11.0 ) [CRAN] 2021-05-17T21:48:17.2175270Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-17T21:48:17.3928034Z Downloading GitHub repo neuroconductor/MNITemplate@ef27207f48885897b8bda277100c3bb8328ad412 2021-05-17T21:48:19.5890457Z oro.nifti (NA -> bd06b05d2...) [GitHub] 2021-05-17T21:48:19.5892056Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-17T21:48:19.5893068Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-17T21:48:19.5894041Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-17T21:48:19.7635453Z Downloading GitHub repo neuroconductor/oro.nifti@bd06b05d2a090c743e51d745a826e8b77af278f0 2021-05-17T21:48:21.3851765Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-17T21:48:21.3853373Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-17T21:48:21.3854417Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-17T21:48:21.3855400Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-17T21:48:21.3856370Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-17T21:48:21.3857324Z rticles (NA -> 0.19 ) [CRAN] 2021-05-17T21:48:21.3858247Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-17T21:48:21.3859170Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-17T21:48:21.5673877Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-17T21:48:23.0084824Z 2021-05-17T21:48:23.2039216Z 2021-05-17T21:48:23.2041306Z checking for file ‘/tmp/RtmpiqvPCt/remotesd4c032d1d927/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-17T21:48:23.2110829Z 2021-05-17T21:48:23.2112859Z ✔ checking for file ‘/tmp/RtmpiqvPCt/remotesd4c032d1d927/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-17T21:48:23.2221341Z 2021-05-17T21:48:23.2221902Z 2021-05-17T21:48:23.2222769Z ─ preparing ‘RNifti’: 2021-05-17T21:48:23.2338950Z checking DESCRIPTION meta-information ... 2021-05-17T21:48:23.2363095Z 2021-05-17T21:48:23.2364467Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:48:23.2387755Z ─ cleaning src 2021-05-17T21:48:23.2395929Z 2021-05-17T21:48:23.2422818Z 2021-05-17T21:48:23.2423911Z ─ running ‘cleanup’ 2021-05-17T21:48:23.2884486Z 2021-05-17T21:48:23.2913491Z 2021-05-17T21:48:23.2915970Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:48:23.3257763Z 2021-05-17T21:48:23.3287401Z 2021-05-17T21:48:23.3289981Z ─ checking for empty or unneeded directories 2021-05-17T21:48:23.3309006Z 2021-05-17T21:48:23.3332412Z 2021-05-17T21:48:23.3334328Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-17T21:48:23.6262712Z 2021-05-17T21:48:24.4569175Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:48:24.4570198Z 2021-05-17T21:48:24.4570849Z 2021-05-17T21:48:24.4571193Z 2021-05-17T21:48:24.4573359Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-17T21:48:24.4575771Z (as ‘lib’ is unspecified) 2021-05-17T21:48:24.4576949Z * installing *source* package ‘RNifti’ ... 2021-05-17T21:48:24.4577838Z ** using staged installation 2021-05-17T21:48:24.4578517Z ** libs 2021-05-17T21:48:41.6503334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-17T21:48:41.7350980Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-17T21:48:41.8201190Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-17T21:48:41.8572886Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-17T21:48:41.9642323Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-17T21:48:42.4182919Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-17T21:48:42.4593130Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-17T21:48:42.5771459Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-17T21:48:42.7245079Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-17T21:48:42.8518755Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-17T21:48:43.0801035Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-17T21:48:43.1875644Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-17T21:48:43.9611030Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-17T21:48:43.9622531Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-17T21:48:44.0654423Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-17T21:48:44.1010370Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-17T21:48:44.1455006Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-17T21:48:44.2215032Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-17T21:48:45.3012910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-17T21:48:47.5444394Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:48:47.7287615Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-17T21:48:47.7413133Z ** R 2021-05-17T21:48:47.7489821Z ** inst 2021-05-17T21:48:47.7518175Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:48.5227052Z ** help 2021-05-17T21:48:48.5671417Z *** installing help indices 2021-05-17T21:48:48.6016694Z ** building package indices 2021-05-17T21:48:48.8097742Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:49.0725192Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:48:49.0962501Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:49.3582895Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:49.3593737Z * DONE (RNifti) 2021-05-17T21:48:49.3746381Z Installing 7 packages: base64enc, tinytex, htmltools, rmarkdown, rticles, abind, bitops 2021-05-17T21:48:49.3757161Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:48:49.3757961Z (as ‘lib’ is unspecified) 2021-05-17T21:49:04.2187864Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-17T21:49:04.7239689Z Content type 'application/x-tar' length 7843 bytes 2021-05-17T21:49:04.7240490Z ================================================== 2021-05-17T21:49:04.7240996Z downloaded 7843 bytes 2021-05-17T21:49:04.7241308Z 2021-05-17T21:49:04.7286497Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-17T21:49:04.9222189Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-17T21:49:04.9230139Z ================================================== 2021-05-17T21:49:04.9231804Z downloaded 28 KB 2021-05-17T21:49:04.9232117Z 2021-05-17T21:49:04.9273391Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-17T21:49:05.4330754Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-17T21:49:05.4332172Z ================================================== 2021-05-17T21:49:05.4333112Z downloaded 70 KB 2021-05-17T21:49:05.4333469Z 2021-05-17T21:49:05.4376574Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-17T21:49:05.6124692Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-17T21:49:05.7725994Z ================================================== 2021-05-17T21:49:05.7726556Z downloaded 3.1 MB 2021-05-17T21:49:05.7726833Z 2021-05-17T21:49:05.7774290Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rticles_0.19.tar.gz' 2021-05-17T21:49:06.2577768Z Content type 'binary/octet-stream' length 1634953 bytes (1.6 MB) 2021-05-17T21:49:06.2897389Z ================================================== 2021-05-17T21:49:06.2897888Z downloaded 1.6 MB 2021-05-17T21:49:06.2938505Z 2021-05-17T21:49:06.2940402Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-17T21:49:06.7292490Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-17T21:49:06.7294855Z ================================================== 2021-05-17T21:49:06.7295377Z downloaded 21 KB 2021-05-17T21:49:06.7295691Z 2021-05-17T21:49:06.7343511Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-17T21:49:06.9251184Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-17T21:49:06.9252201Z ================================================== 2021-05-17T21:49:06.9252793Z downloaded 10 KB 2021-05-17T21:49:06.9253186Z 2021-05-17T21:49:07.1260517Z * installing *source* package ‘base64enc’ ... 2021-05-17T21:49:07.1269312Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:07.1271299Z ** using staged installation 2021-05-17T21:49:07.1374025Z ** libs 2021-05-17T21:49:07.1425097Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:49:07.2507448Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-17T21:49:07.3244383Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T21:49:07.3967245Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:49:07.4192472Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-17T21:49:07.4207951Z ** R 2021-05-17T21:49:07.4236811Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:07.6776163Z ** help 2021-05-17T21:49:07.7005786Z *** installing help indices 2021-05-17T21:49:07.7168970Z ** building package indices 2021-05-17T21:49:07.9071025Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:08.0817683Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:49:08.0990054Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:08.2716450Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:08.2722367Z * DONE (base64enc) 2021-05-17T21:49:08.4867072Z * installing *source* package ‘tinytex’ ... 2021-05-17T21:49:08.4877904Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:08.4878987Z ** using staged installation 2021-05-17T21:49:08.5090433Z ** R 2021-05-17T21:49:08.5169287Z ** inst 2021-05-17T21:49:08.5171028Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:09.2199944Z ** help 2021-05-17T21:49:09.2517544Z *** installing help indices 2021-05-17T21:49:09.2788001Z ** building package indices 2021-05-17T21:49:09.4843572Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:09.6719158Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:09.8709592Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:09.8719581Z * DONE (tinytex) 2021-05-17T21:49:10.0886682Z * installing *source* package ‘abind’ ... 2021-05-17T21:49:10.0897944Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:10.0899069Z ** using staged installation 2021-05-17T21:49:10.1006226Z ** R 2021-05-17T21:49:10.1054317Z ** inst 2021-05-17T21:49:10.1061522Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:10.6550803Z ** help 2021-05-17T21:49:10.6806259Z *** installing help indices 2021-05-17T21:49:10.7022963Z ** building package indices 2021-05-17T21:49:10.8988057Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:11.0731314Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:11.2587505Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:11.2588716Z * DONE (abind) 2021-05-17T21:49:11.4585635Z * installing *source* package ‘bitops’ ... 2021-05-17T21:49:11.4594037Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:11.4595107Z ** using staged installation 2021-05-17T21:49:11.4685691Z ** libs 2021-05-17T21:49:11.4734242Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-17T21:49:11.6500872Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-17T21:49:11.7070534Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:49:11.7521101Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:49:11.7674996Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-17T21:49:11.7689829Z ** R 2021-05-17T21:49:11.7715295Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:11.9911994Z ** help 2021-05-17T21:49:12.0168490Z *** installing help indices 2021-05-17T21:49:12.0344651Z ** building package indices 2021-05-17T21:49:12.2247357Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:12.4013738Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:49:12.4188960Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:12.5907198Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:12.5912538Z * DONE (bitops) 2021-05-17T21:49:12.8360130Z * installing *source* package ‘htmltools’ ... 2021-05-17T21:49:12.8382321Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:12.8383776Z ** using staged installation 2021-05-17T21:49:12.8529110Z ** libs 2021-05-17T21:49:12.8577562Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:49:12.9019667Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-17T21:49:13.0071104Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:49:13.0290045Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-17T21:49:13.0302990Z ** R 2021-05-17T21:49:13.0426669Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:14.4632210Z ** help 2021-05-17T21:49:14.5427962Z *** installing help indices 2021-05-17T21:49:14.5997609Z ** building package indices 2021-05-17T21:49:14.8396507Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:15.0403586Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:49:15.0577944Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:15.2779916Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:15.2793724Z * DONE (htmltools) 2021-05-17T21:49:16.0445038Z * installing *source* package ‘rmarkdown’ ... 2021-05-17T21:49:16.0725018Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:16.0725940Z ** using staged installation 2021-05-17T21:49:16.0993356Z ** R 2021-05-17T21:49:16.1359569Z ** inst 2021-05-17T21:49:16.1576670Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:19.5044225Z ** help 2021-05-17T21:49:19.6959505Z *** installing help indices 2021-05-17T21:49:19.8504199Z *** copying figures 2021-05-17T21:49:19.8505591Z ** building package indices 2021-05-17T21:49:20.1350877Z ** installing vignettes 2021-05-17T21:49:20.1439160Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:20.3814017Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:20.6813352Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:20.6869640Z * DONE (rmarkdown) 2021-05-17T21:49:21.2468034Z * installing *source* package ‘rticles’ ... 2021-05-17T21:49:21.2636593Z ** package ‘rticles’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:21.2637807Z ** using staged installation 2021-05-17T21:49:21.2852762Z ** R 2021-05-17T21:49:21.3127689Z ** inst 2021-05-17T21:49:21.3350286Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:21.7772675Z ** help 2021-05-17T21:49:21.8144462Z *** installing help indices 2021-05-17T21:49:21.8468162Z ** building package indices 2021-05-17T21:49:22.0485697Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:22.2922393Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:22.5348353Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:22.5386887Z * DONE (rticles) 2021-05-17T21:49:22.5520760Z 2021-05-17T21:49:22.5521779Z The downloaded source packages are in 2021-05-17T21:49:22.5523158Z ‘/tmp/RtmpiqvPCt/downloaded_packages’ 2021-05-17T21:49:22.6577551Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-17T21:49:22.6578579Z Use `force = TRUE` to force installation 2021-05-17T21:49:22.8437891Z 2021-05-17T21:49:22.8450968Z checking for file ‘/tmp/RtmpiqvPCt/remotesd4c0377aa74e/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ ... 2021-05-17T21:49:22.8482467Z 2021-05-17T21:49:22.8485288Z ✔ checking for file ‘/tmp/RtmpiqvPCt/remotesd4c0377aa74e/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ 2021-05-17T21:49:22.8701925Z 2021-05-17T21:49:22.8732336Z 2021-05-17T21:49:22.8734777Z ─ preparing ‘oro.nifti’: 2021-05-17T21:49:22.8854282Z checking DESCRIPTION meta-information ... 2021-05-17T21:49:22.8885671Z 2021-05-17T21:49:22.8887952Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:49:23.0229678Z 2021-05-17T21:49:23.0261024Z 2021-05-17T21:49:23.0263804Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:49:23.0274640Z 2021-05-17T21:49:23.0299706Z 2021-05-17T21:49:23.0301770Z ─ checking for empty or unneeded directories 2021-05-17T21:49:23.0304707Z Removed empty directory ‘oro.nifti/vignettes’ 2021-05-17T21:49:23.0308090Z Omitted ‘LazyData’ and ‘LazyDataCompression’ from DESCRIPTION 2021-05-17T21:49:23.0414258Z 2021-05-17T21:49:23.0438424Z 2021-05-17T21:49:23.0440447Z ─ building ‘oro.nifti_0.10.3.tar.gz’ 2021-05-17T21:49:23.5295077Z 2021-05-17T21:49:23.5298386Z 2021-05-17T21:49:23.5299889Z 2021-05-17T21:49:23.5743484Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:49:23.5744392Z (as ‘lib’ is unspecified) 2021-05-17T21:49:24.0970728Z * installing *source* package ‘oro.nifti’ ... 2021-05-17T21:49:24.0972204Z ** using staged installation 2021-05-17T21:49:24.1164458Z ** R 2021-05-17T21:49:24.1598850Z ** demo 2021-05-17T21:49:24.1606008Z ** inst 2021-05-17T21:49:24.1676395Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:30.9739684Z ** help 2021-05-17T21:49:30.9740063Z 2021-05-17T21:49:30.9742303Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-17T21:49:31.1321030Z *** installing help indices 2021-05-17T21:49:31.4283084Z ** building package indices 2021-05-17T21:49:31.8471029Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:32.4401203Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:33.1376744Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:33.1453667Z * DONE (oro.nifti) 2021-05-17T21:49:33.1645351Z Installing 3 packages: RNifti, abind, bitops 2021-05-17T21:49:33.1656221Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:49:33.1657054Z (as ‘lib’ is unspecified) 2021-05-17T21:49:48.3502354Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T21:49:48.6056302Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T21:49:48.6058538Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T21:49:48.6059723Z In addition: Warning message: 2021-05-17T21:49:48.6060534Z In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T21:49:48.6062460Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-17T21:49:48.6080787Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-17T21:49:48.6082172Z download of package ‘RNifti’ failed 2021-05-17T21:49:48.6083749Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-17T21:49:49.0000335Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-17T21:49:49.0001655Z ================================================== 2021-05-17T21:49:49.0002544Z downloaded 21 KB 2021-05-17T21:49:49.0002859Z 2021-05-17T21:49:49.0044118Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-17T21:49:49.2743246Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-17T21:49:49.2744841Z ================================================== 2021-05-17T21:49:49.2745543Z downloaded 10 KB 2021-05-17T21:49:49.2746260Z 2021-05-17T21:49:49.4854947Z * installing *source* package ‘abind’ ... 2021-05-17T21:49:49.4867534Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:49.4898150Z ** using staged installation 2021-05-17T21:49:49.5003515Z ** R 2021-05-17T21:49:49.5051355Z ** inst 2021-05-17T21:49:49.5059245Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:50.0535729Z ** help 2021-05-17T21:49:50.0791163Z *** installing help indices 2021-05-17T21:49:50.1006475Z ** building package indices 2021-05-17T21:49:50.2977589Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:50.4774890Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:50.6601992Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:50.6610118Z * DONE (abind) 2021-05-17T21:49:50.8662392Z * installing *source* package ‘bitops’ ... 2021-05-17T21:49:50.8670868Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:50.8700863Z ** using staged installation 2021-05-17T21:49:50.8794710Z ** libs 2021-05-17T21:49:50.8842488Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-17T21:49:51.0617927Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-17T21:49:51.1194345Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:49:51.1645514Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:49:51.1828420Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-17T21:49:51.1829584Z ** R 2021-05-17T21:49:51.1840126Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:51.4050591Z ** help 2021-05-17T21:49:51.4307801Z *** installing help indices 2021-05-17T21:49:51.4483387Z ** building package indices 2021-05-17T21:49:51.6383950Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:51.8150730Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:49:51.8327487Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:52.0045443Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:52.0050732Z * DONE (bitops) 2021-05-17T21:49:52.0136748Z 2021-05-17T21:49:52.0137732Z The downloaded source packages are in 2021-05-17T21:49:52.0138963Z ‘/tmp/RtmpiqvPCt/downloaded_packages’ 2021-05-17T21:49:52.0902487Z Skipping install of 'oro.nifti' from a github remote, the SHA1 (bd06b05d) has not changed since last install. 2021-05-17T21:49:52.0903555Z Use `force = TRUE` to force installation 2021-05-17T21:49:52.2813220Z 2021-05-17T21:49:52.2824633Z checking for file ‘/tmp/RtmpiqvPCt/remotesd4c024843081/neuroconductor-MNITemplate-ef27207/DESCRIPTION’ ... 2021-05-17T21:49:52.2847278Z 2021-05-17T21:49:52.2850014Z ✔ checking for file ‘/tmp/RtmpiqvPCt/remotesd4c024843081/neuroconductor-MNITemplate-ef27207/DESCRIPTION’ 2021-05-17T21:49:52.3103966Z 2021-05-17T21:49:52.3104942Z 2021-05-17T21:49:52.3106779Z ─ preparing ‘MNITemplate’: 2021-05-17T21:49:52.3107333Z checking 2021-05-17T21:49:52.3107662Z 2021-05-17T21:49:52.3180008Z checking DESCRIPTION meta-information ... 2021-05-17T21:49:52.3201645Z 2021-05-17T21:49:52.3203704Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:49:52.3429011Z 2021-05-17T21:49:52.3456146Z 2021-05-17T21:49:52.3458896Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:49:52.3468886Z 2021-05-17T21:49:52.3491396Z 2021-05-17T21:49:52.3493681Z ─ checking for empty or unneeded directories 2021-05-17T21:49:52.3516762Z ─ building ‘MNITemplate_1.0.0.tar.gz’ 2021-05-17T21:49:53.7432364Z 2021-05-17T21:49:53.7435560Z 2021-05-17T21:49:53.7437045Z 2021-05-17T21:49:53.7812671Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:49:53.7813528Z (as ‘lib’ is unspecified) 2021-05-17T21:49:54.7170234Z * installing *source* package ‘MNITemplate’ ... 2021-05-17T21:49:54.7171609Z ** using staged installation 2021-05-17T21:49:54.7311274Z ** R 2021-05-17T21:49:54.7335842Z ** inst 2021-05-17T21:49:54.7600540Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:55.3863979Z ** help 2021-05-17T21:49:55.4003461Z *** installing help indices 2021-05-17T21:49:55.4180183Z ** building package indices 2021-05-17T21:49:55.6104603Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:56.1867620Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:56.7627712Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:56.7636890Z * DONE (MNITemplate) 2021-05-17T21:49:56.9554708Z Downloading GitHub repo neuroconductor/neurobase@1d4b172915192d419b4defb2e56d84d7541c03cd 2021-05-17T21:49:58.6913178Z 2021-05-17T21:49:58.6915277Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-17T21:49:58.6916402Z Installing 4 packages: R.methodsS3, R.oo, R.utils, matrixStats 2021-05-17T21:49:58.6917615Z R.oo (NA -> 1.24.0) [CRAN] 2021-05-17T21:49:58.6918467Z R.utils (NA -> 2.10.1) [CRAN] 2021-05-17T21:49:58.6919384Z matrixStats (NA -> 0.58.0) [CRAN] 2021-05-17T21:49:58.6923693Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:49:58.6924754Z (as ‘lib’ is unspecified) 2021-05-17T21:50:13.1848833Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-17T21:50:13.6731456Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-17T21:50:13.6736431Z ================================================== 2021-05-17T21:50:13.6736991Z downloaded 23 KB 2021-05-17T21:50:13.6737267Z 2021-05-17T21:50:13.6777075Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-17T21:50:13.8688014Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-17T21:50:13.8870995Z ================================================== 2021-05-17T21:50:13.8871522Z downloaded 373 KB 2021-05-17T21:50:13.8871800Z 2021-05-17T21:50:13.8910677Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-17T21:50:14.2363152Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-17T21:50:14.2549292Z ================================================== 2021-05-17T21:50:14.2549797Z downloaded 353 KB 2021-05-17T21:50:14.2550076Z 2021-05-17T21:50:14.2590391Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-17T21:50:14.7771841Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-17T21:50:14.7896873Z ================================================== 2021-05-17T21:50:14.7897395Z downloaded 190 KB 2021-05-17T21:50:14.7897668Z 2021-05-17T21:50:15.0156860Z * installing *source* package ‘R.methodsS3’ ... 2021-05-17T21:50:15.0176008Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-17T21:50:15.0180276Z ** using staged installation 2021-05-17T21:50:15.0300632Z ** R 2021-05-17T21:50:15.0364578Z ** inst 2021-05-17T21:50:15.0372582Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:50:15.4987082Z ** help 2021-05-17T21:50:15.5336728Z *** installing help indices 2021-05-17T21:50:15.5681273Z ** building package indices 2021-05-17T21:50:15.7691551Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:50:15.9446656Z ** testing if installed package can be loaded from final location 2021-05-17T21:50:16.1278391Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:50:16.1286889Z * DONE (R.methodsS3) 2021-05-17T21:50:16.5509138Z * installing *source* package ‘matrixStats’ ... 2021-05-17T21:50:16.5604876Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-17T21:50:16.5607586Z ** using staged installation 2021-05-17T21:50:16.5749266Z ** libs 2021-05-17T21:50:16.5809412Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-17T21:50:16.6208594Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-17T21:50:16.6987608Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-17T21:50:16.7972375Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-17T21:50:16.8875186Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-17T21:50:17.0174908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-17T21:50:18.2629923Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-17T21:50:18.6040628Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-17T21:50:19.9878339Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-17T21:50:20.1907947Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-17T21:50:20.2524529Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-17T21:50:20.4462205Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-17T21:50:20.5820105Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-17T21:50:20.7248306Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-17T21:50:20.7891883Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-17T21:50:22.1233695Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-17T21:50:23.0950380Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-17T21:50:24.0643585Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-17T21:50:24.8853407Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-17T21:50:25.7078809Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-17T21:50:27.6194520Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-17T21:50:27.7498834Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-17T21:50:28.6930345Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-17T21:50:29.2426325Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-17T21:50:30.0867837Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-17T21:50:30.4771884Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-17T21:50:31.9413185Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-17T21:50:43.3482513Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-17T21:50:43.8786563Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-17T21:50:44.4996049Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-17T21:50:44.6161992Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-17T21:50:44.7234490Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-17T21:50:44.9565377Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-17T21:50:45.1192546Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-17T21:50:45.5181188Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-17T21:51:35.9928960Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:51:36.0829392Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-17T21:51:36.0933368Z ** R 2021-05-17T21:51:36.1141838Z ** inst 2021-05-17T21:51:36.1187589Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:37.3891009Z ** help 2021-05-17T21:51:37.5191573Z *** installing help indices 2021-05-17T21:51:37.6008969Z ** building package indices 2021-05-17T21:51:37.8526356Z ** installing vignettes 2021-05-17T21:51:37.8589925Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:38.0357026Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:51:38.0598073Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:38.2463269Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:38.2483821Z * DONE (matrixStats) 2021-05-17T21:51:38.6097968Z * installing *source* package ‘R.oo’ ... 2021-05-17T21:51:38.6168128Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-17T21:51:38.6169296Z ** using staged installation 2021-05-17T21:51:38.6297202Z ** R 2021-05-17T21:51:38.6607903Z ** inst 2021-05-17T21:51:38.6623256Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:41.3694615Z ** help 2021-05-17T21:51:41.8316470Z *** installing help indices 2021-05-17T21:51:42.1550595Z ** building package indices 2021-05-17T21:51:42.6015323Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:42.8040433Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:43.0850333Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:43.0899435Z * DONE (R.oo) 2021-05-17T21:51:43.6002538Z * installing *source* package ‘R.utils’ ... 2021-05-17T21:51:43.6133473Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-17T21:51:43.6138559Z ** using staged installation 2021-05-17T21:51:43.6278406Z ** R 2021-05-17T21:51:43.6945908Z ** inst 2021-05-17T21:51:43.6959015Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:49.3762245Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-17T21:51:49.3763618Z ** help 2021-05-17T21:51:49.3764501Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-17T21:51:50.1855128Z *** installing help indices 2021-05-17T21:51:50.6389156Z ** building package indices 2021-05-17T21:51:51.3216439Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:51.5567114Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:51.9402185Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:51.9476204Z * DONE (R.utils) 2021-05-17T21:51:51.9627412Z 2021-05-17T21:51:51.9628473Z The downloaded source packages are in 2021-05-17T21:51:51.9629927Z ‘/tmp/RtmpiqvPCt/downloaded_packages’ 2021-05-17T21:51:52.1372972Z 2021-05-17T21:51:52.1387073Z checking for file ‘/tmp/RtmpiqvPCt/remotesd4c056df5a63/neuroconductor-neurobase-1d4b172/DESCRIPTION’ ... 2021-05-17T21:51:52.1404964Z 2021-05-17T21:51:52.1406794Z ✔ checking for file ‘/tmp/RtmpiqvPCt/remotesd4c056df5a63/neuroconductor-neurobase-1d4b172/DESCRIPTION’ 2021-05-17T21:51:52.1645032Z 2021-05-17T21:51:52.1646562Z 2021-05-17T21:51:52.1647611Z ─ preparing ‘neurobase’: 2021-05-17T21:51:52.1648133Z 2021-05-17T21:51:52.1648595Z 2021-05-17T21:51:52.1734797Z checking DESCRIPTION meta-information ... 2021-05-17T21:51:52.1753125Z 2021-05-17T21:51:52.1755776Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:51:52.2550362Z 2021-05-17T21:51:52.2573653Z 2021-05-17T21:51:52.2576352Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:51:52.2584927Z 2021-05-17T21:51:52.2605894Z 2021-05-17T21:51:52.2608092Z ─ checking for empty or unneeded directories 2021-05-17T21:51:52.2615564Z 2021-05-17T21:51:52.2636344Z 2021-05-17T21:51:52.2638474Z ─ building ‘neurobase_1.30.1.tar.gz’ 2021-05-17T21:51:52.3283808Z 2021-05-17T21:51:52.3286738Z 2021-05-17T21:51:52.3288251Z 2021-05-17T21:51:52.3378053Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:51:52.3378860Z (as ‘lib’ is unspecified) 2021-05-17T21:51:52.6171071Z * installing *source* package ‘neurobase’ ... 2021-05-17T21:51:52.6172541Z ** using staged installation 2021-05-17T21:51:52.6338276Z ** R 2021-05-17T21:51:52.6529909Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:55.0014279Z ** help 2021-05-17T21:51:55.1602713Z *** installing help indices 2021-05-17T21:51:55.2695209Z ** building package indices 2021-05-17T21:51:55.5444606Z ** installing vignettes 2021-05-17T21:51:55.5499665Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:56.2511458Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:56.9762712Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:56.9783381Z * DONE (neurobase) 2021-05-17T21:51:56.9941897Z Installing 12 packages: base64enc, R.methodsS3, R.oo, RNifti, abind, bitops, tinytex, htmltools, R.utils, matrixStats, oro.nifti, rmarkdown 2021-05-17T21:51:56.9951504Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:51:56.9952339Z (as ‘lib’ is unspecified) 2021-05-17T21:52:11.5893516Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-17T21:52:12.7992154Z Content type 'application/x-tar' length 7843 bytes 2021-05-17T21:52:12.7993611Z ================================================== 2021-05-17T21:52:12.7994827Z downloaded 7843 bytes 2021-05-17T21:52:12.7995178Z 2021-05-17T21:52:12.8026818Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-17T21:52:13.0664229Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-17T21:52:13.0668201Z ================================================== 2021-05-17T21:52:13.0668677Z downloaded 23 KB 2021-05-17T21:52:13.0668951Z 2021-05-17T21:52:13.0706853Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-17T21:52:13.4587829Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-17T21:52:13.4774126Z ================================================== 2021-05-17T21:52:13.4774963Z downloaded 373 KB 2021-05-17T21:52:13.4775491Z 2021-05-17T21:52:13.4820120Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T21:52:13.5668396Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T21:52:13.5671226Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T21:52:13.5672700Z In addition: Warning message: 2021-05-17T21:52:13.5673810Z In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T21:52:13.5676318Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-17T21:52:13.5678315Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-17T21:52:13.5679660Z download of package ‘RNifti’ failed 2021-05-17T21:52:13.5681479Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-17T21:52:13.8351523Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-17T21:52:13.8354285Z ================================================== 2021-05-17T21:52:13.8354748Z downloaded 21 KB 2021-05-17T21:52:13.8355025Z 2021-05-17T21:52:13.8393043Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-17T21:52:14.2272250Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-17T21:52:14.2273972Z ================================================== 2021-05-17T21:52:14.2274724Z downloaded 10 KB 2021-05-17T21:52:14.2275243Z 2021-05-17T21:52:14.2311182Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-17T21:52:14.5028872Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-17T21:52:14.5030411Z ================================================== 2021-05-17T21:52:14.5030834Z downloaded 28 KB 2021-05-17T21:52:14.5031112Z 2021-05-17T21:52:14.5071110Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-17T21:52:14.7740527Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-17T21:52:14.7805774Z ================================================== 2021-05-17T21:52:14.7806597Z downloaded 70 KB 2021-05-17T21:52:14.7807059Z 2021-05-17T21:52:14.7843628Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-17T21:52:14.9629781Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-17T21:52:14.9810882Z ================================================== 2021-05-17T21:52:14.9811784Z downloaded 353 KB 2021-05-17T21:52:14.9812415Z 2021-05-17T21:52:14.9851178Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-17T21:52:15.1635749Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-17T21:52:15.1770933Z ================================================== 2021-05-17T21:52:15.1771487Z downloaded 190 KB 2021-05-17T21:52:15.1771791Z 2021-05-17T21:52:15.1811723Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/oro.nifti_0.11.0.tar.gz' 2021-05-17T21:52:15.3991370Z Content type 'binary/octet-stream' length 5230493 bytes (5.0 MB) 2021-05-17T21:52:15.4713412Z ================================================== 2021-05-17T21:52:15.4713962Z downloaded 5.0 MB 2021-05-17T21:52:15.4714249Z 2021-05-17T21:52:15.4756649Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-17T21:52:15.6588586Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-17T21:52:15.7973137Z ================================================== 2021-05-17T21:52:15.7973734Z downloaded 3.1 MB 2021-05-17T21:52:15.7974017Z 2021-05-17T21:52:15.9965274Z * installing *source* package ‘base64enc’ ... 2021-05-17T21:52:15.9972608Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-17T21:52:16.0002264Z ** using staged installation 2021-05-17T21:52:16.0102236Z ** libs 2021-05-17T21:52:16.0148643Z 2021-05-17T21:52:16.0150344Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:52:16.1207700Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-17T21:52:16.1941074Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T21:52:16.2662430Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:52:16.2908995Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-17T21:52:16.2910429Z ** R 2021-05-17T21:52:16.2927552Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:52:16.5435823Z ** help 2021-05-17T21:52:16.5668285Z *** installing help indices 2021-05-17T21:52:16.5828888Z ** building package indices 2021-05-17T21:52:16.7678490Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:52:16.9436437Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:52:16.9611025Z ** testing if installed package can be loaded from final location 2021-05-17T21:52:17.1320490Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:52:17.1326078Z * DONE (base64enc) 2021-05-17T21:52:17.3615490Z * installing *source* package ‘R.methodsS3’ ... 2021-05-17T21:52:17.3629926Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-17T21:52:17.3660637Z ** using staged installation 2021-05-17T21:52:17.3783829Z ** R 2021-05-17T21:52:17.3847829Z ** inst 2021-05-17T21:52:17.3855907Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:52:17.8546625Z ** help 2021-05-17T21:52:17.8877506Z *** installing help indices 2021-05-17T21:52:17.9223805Z ** building package indices 2021-05-17T21:52:18.1266416Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:52:18.3037702Z ** testing if installed package can be loaded from final location 2021-05-17T21:52:18.4864475Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:52:18.4872666Z * DONE (R.methodsS3) 2021-05-17T21:52:18.6990544Z * installing *source* package ‘abind’ ... 2021-05-17T21:52:18.7006122Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-17T21:52:18.7038046Z ** using staged installation 2021-05-17T21:52:18.7147423Z ** R 2021-05-17T21:52:18.7195574Z ** inst 2021-05-17T21:52:18.7203563Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:52:19.2597665Z ** help 2021-05-17T21:52:19.2852144Z *** installing help indices 2021-05-17T21:52:19.3067410Z ** building package indices 2021-05-17T21:52:19.5007068Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:52:19.6752828Z ** testing if installed package can be loaded from final location 2021-05-17T21:52:19.8543374Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:52:19.8551798Z * DONE (abind) 2021-05-17T21:52:20.0577394Z * installing *source* package ‘bitops’ ... 2021-05-17T21:52:20.0585712Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-17T21:52:20.0618260Z ** using staged installation 2021-05-17T21:52:20.0717381Z ** libs 2021-05-17T21:52:20.0765972Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-17T21:52:20.2539577Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-17T21:52:20.3105869Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:52:20.3574139Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:52:20.3730164Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-17T21:52:20.3745917Z ** R 2021-05-17T21:52:20.3771441Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:52:20.5970610Z ** help 2021-05-17T21:52:20.6232923Z *** installing help indices 2021-05-17T21:52:20.6422196Z ** building package indices 2021-05-17T21:52:20.8297808Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:52:21.0083347Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:52:21.0257023Z ** testing if installed package can be loaded from final location 2021-05-17T21:52:21.1964119Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:52:21.1969654Z * DONE (bitops) 2021-05-17T21:52:21.4098745Z * installing *source* package ‘tinytex’ ... 2021-05-17T21:52:21.4110957Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-17T21:52:21.4138249Z ** using staged installation 2021-05-17T21:52:21.4341207Z ** R 2021-05-17T21:52:21.4408782Z ** inst 2021-05-17T21:52:21.4416478Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:52:22.1307054Z ** help 2021-05-17T21:52:22.1608928Z *** installing help indices 2021-05-17T21:52:22.1875454Z ** building package indices 2021-05-17T21:52:22.3877341Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:52:22.5693483Z ** testing if installed package can be loaded from final location 2021-05-17T21:52:22.7649464Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:52:22.7659379Z * DONE (tinytex) 2021-05-17T21:52:23.1952182Z * installing *source* package ‘matrixStats’ ... 2021-05-17T21:52:23.2049741Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-17T21:52:23.2076387Z ** using staged installation 2021-05-17T21:52:23.2231116Z ** libs 2021-05-17T21:52:23.2293466Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-17T21:52:23.2699947Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-17T21:52:23.3496665Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-17T21:52:23.4509121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-17T21:52:23.5447161Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-17T21:52:23.6765939Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-17T21:52:24.9297671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-17T21:52:25.2740290Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-17T21:52:26.6640426Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-17T21:52:26.8656204Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-17T21:52:26.9275316Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-17T21:52:27.1209667Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-17T21:52:27.2580801Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-17T21:52:27.4016886Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-17T21:52:27.4667871Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-17T21:52:28.8033135Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-17T21:52:29.7802873Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-17T21:52:30.7593847Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-17T21:52:31.5867847Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-17T21:52:32.4181863Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-17T21:52:34.3284061Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-17T21:52:34.4582207Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-17T21:52:35.3930190Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-17T21:52:35.9438179Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-17T21:52:36.7898171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-17T21:52:37.1805687Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-17T21:52:38.6587437Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-17T21:52:50.0604045Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-17T21:52:50.5858222Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-17T21:52:51.2006605Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-17T21:52:51.3164408Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-17T21:52:51.4230329Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-17T21:52:51.6547864Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-17T21:52:51.8155219Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-17T21:52:52.2121509Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-17T21:53:43.0105296Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:53:43.0984492Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-17T21:53:43.1112809Z ** R 2021-05-17T21:53:43.1327963Z ** inst 2021-05-17T21:53:43.1374475Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:53:44.4683165Z ** help 2021-05-17T21:53:44.6012888Z *** installing help indices 2021-05-17T21:53:44.6860439Z ** building package indices 2021-05-17T21:53:44.9427148Z ** installing vignettes 2021-05-17T21:53:44.9471668Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:53:45.1298868Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:53:45.1538178Z ** testing if installed package can be loaded from final location 2021-05-17T21:53:45.3509992Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:53:45.3533162Z * DONE (matrixStats) 2021-05-17T21:53:45.7307942Z * installing *source* package ‘R.oo’ ... 2021-05-17T21:53:45.7379174Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-17T21:53:45.7418715Z ** using staged installation 2021-05-17T21:53:45.7550731Z ** R 2021-05-17T21:53:45.7867045Z ** inst 2021-05-17T21:53:45.7881835Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:53:48.5981612Z ** help 2021-05-17T21:53:49.0715642Z *** installing help indices 2021-05-17T21:53:49.4282734Z ** building package indices 2021-05-17T21:53:49.8918028Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:53:50.0963086Z ** testing if installed package can be loaded from final location 2021-05-17T21:53:50.3798981Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:53:50.3848464Z * DONE (R.oo) 2021-05-17T21:53:50.6355929Z * installing *source* package ‘htmltools’ ... 2021-05-17T21:53:50.6377875Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-17T21:53:50.6408486Z ** using staged installation 2021-05-17T21:53:50.6559004Z ** libs 2021-05-17T21:53:50.6607451Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:53:50.7052425Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-17T21:53:50.8074322Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:53:50.8308313Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-17T21:53:50.8309017Z ** R 2021-05-17T21:53:50.8430070Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:53:52.2507547Z ** help 2021-05-17T21:53:52.3288907Z *** installing help indices 2021-05-17T21:53:52.3852075Z ** building package indices 2021-05-17T21:53:52.6251421Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:53:52.8275569Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:53:52.8448664Z ** testing if installed package can be loaded from final location 2021-05-17T21:53:53.0663188Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:53:53.0678696Z * DONE (htmltools) 2021-05-17T21:53:53.5941589Z * installing *source* package ‘oro.nifti’ ... 2021-05-17T21:53:53.6117332Z ** package ‘oro.nifti’ successfully unpacked and MD5 sums checked 2021-05-17T21:53:53.6147492Z ** using staged installation 2021-05-17T21:53:53.6328081Z ** R 2021-05-17T21:53:53.6761814Z ** demo 2021-05-17T21:53:53.6769430Z ** inst 2021-05-17T21:53:53.6844003Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:54:00.2610039Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-17T21:54:00.2611156Z ** help 2021-05-17T21:54:00.6320732Z *** installing help indices 2021-05-17T21:54:00.9272969Z ** building package indices 2021-05-17T21:54:01.3484390Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:54:01.9221869Z ** testing if installed package can be loaded from final location 2021-05-17T21:54:02.6205330Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:54:02.6286517Z * DONE (oro.nifti) 2021-05-17T21:54:03.1474320Z * installing *source* package ‘R.utils’ ... 2021-05-17T21:54:03.1602410Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-17T21:54:03.1633609Z ** using staged installation 2021-05-17T21:54:03.1772653Z ** R 2021-05-17T21:54:03.2435928Z ** inst 2021-05-17T21:54:03.2447865Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:54:09.1176563Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-17T21:54:09.1181847Z ** help 2021-05-17T21:54:09.1182783Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-17T21:54:09.9673896Z *** installing help indices 2021-05-17T21:54:10.4288241Z ** building package indices 2021-05-17T21:54:11.1400968Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:54:11.3829684Z ** testing if installed package can be loaded from final location 2021-05-17T21:54:11.7733157Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:54:11.7808544Z * DONE (R.utils) 2021-05-17T21:54:12.5469173Z * installing *source* package ‘rmarkdown’ ... 2021-05-17T21:54:12.5748855Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-17T21:54:12.5775575Z ** using staged installation 2021-05-17T21:54:12.6049744Z ** R 2021-05-17T21:54:12.6414968Z ** inst 2021-05-17T21:54:12.6631698Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:54:15.9404423Z ** help 2021-05-17T21:54:16.1302543Z *** installing help indices 2021-05-17T21:54:16.2842974Z *** copying figures 2021-05-17T21:54:16.2844566Z ** building package indices 2021-05-17T21:54:16.5707070Z ** installing vignettes 2021-05-17T21:54:16.5777675Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:54:16.8156502Z ** testing if installed package can be loaded from final location 2021-05-17T21:54:17.1117789Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:54:17.1174407Z * DONE (rmarkdown) 2021-05-17T21:54:17.1399465Z 2021-05-17T21:54:17.1401888Z The downloaded source packages are in 2021-05-17T21:54:17.1403482Z ‘/tmp/RtmpiqvPCt/downloaded_packages’ 2021-05-17T21:54:17.2535305Z Skipping install of 'MNITemplate' from a github remote, the SHA1 (ef27207f) has not changed since last install. 2021-05-17T21:54:17.2536362Z Use `force = TRUE` to force installation 2021-05-17T21:54:17.3285550Z Skipping install of 'neurobase' from a github remote, the SHA1 (1d4b1729) has not changed since last install. 2021-05-17T21:54:17.3286568Z Use `force = TRUE` to force installation 2021-05-17T21:54:30.7135826Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-17T21:54:30.7137511Z Use `force = TRUE` to force installation 2021-05-17T21:54:30.7148614Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-17T21:54:30.7149742Z Use `force = TRUE` to force installation 2021-05-17T21:54:30.7289162Z ##[group]Run options(width = 100) 2021-05-17T21:54:30.7289667Z options(width = 100) 2021-05-17T21:54:30.7290216Z pkgs <- installed.packages()[, "Package"] 2021-05-17T21:54:30.7290881Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-17T21:54:30.7297833Z shell: /usr/local/bin/Rscript {0} 2021-05-17T21:54:30.7298224Z env: 2021-05-17T21:54:30.7298663Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:54:30.7299104Z TIC_DEPLOY_KEY: 2021-05-17T21:54:30.7299900Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:54:30.7301520Z GITHUB_PAT: *** 2021-05-17T21:54:30.7302379Z COVERALLS_TOKEN: *** 2021-05-17T21:54:30.7302858Z continue-on-error: true 2021-05-17T21:54:30.7303314Z VDIFFR_RUN_TESTS: 2021-05-17T21:54:30.7303772Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:54:30.7304205Z TZ: UTC 2021-05-17T21:54:30.7304566Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:54:30.7305008Z NOT_CRAN: true 2021-05-17T21:54:30.7305360Z ##[endgroup] 2021-05-17T21:54:31.1712974Z ─ Session info 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1.1 2019-08-07 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1771645Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T21:54:31.1772432Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.2.0) 2021-05-17T21:54:31.1773229Z matrixStats 0.58.0 2021-01-29 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1774046Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1774851Z methods * 4.2.0 2021-05-16 [2] local 2021-05-17T21:54:31.1775622Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.2.0) 2021-05-17T21:54:31.1776480Z mime 0.10 2021-02-13 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1777436Z MNITemplate 1.0.0 2021-05-17 [1] Github (neuroconductor/MNITemplate@ef27207) 2021-05-17T21:54:31.1778519Z neurobase 1.30.1 2021-05-17 [1] Github (neuroconductor/neurobase@1d4b172) 2021-05-17T21:54:31.1779441Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.2.0) 2021-05-17T21:54:31.1780223Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T21:54:31.1780994Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1781804Z oro.nifti 0.11.0 2020-09-08 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1782610Z parallel 4.2.0 2021-05-16 [2] local 2021-05-17T21:54:31.1783400Z pillar 1.6.1 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1784205Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1785023Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1785824Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1786734Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1787557Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1788373Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1789167Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1789924Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1790734Z R.methodsS3 1.8.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1791551Z R.oo 1.24.0 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1794976Z R.utils 2.10.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1795768Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1796558Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1797459Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1798283Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1799082Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1799883Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1800667Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1801477Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1802260Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1803161Z RNifti 1.3.1 2021-05-17 [1] Github (neuroconductor/RNifti@929106d) 2021-05-17T21:54:31.1804050Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1804836Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.2.0) 2021-05-17T21:54:31.1805639Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1806462Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1807264Z rticles 0.19 2021-03-04 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1808070Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1808976Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1809805Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T21:54:31.1810606Z splines 4.2.0 2021-05-16 [2] local 2021-05-17T21:54:31.1811377Z stats * 4.2.0 2021-05-16 [2] local 2021-05-17T21:54:31.1812162Z stats4 4.2.0 2021-05-16 [2] local 2021-05-17T21:54:31.1812945Z stringi 1.6.2 2021-05-17 [1] CRAN (R 4.2.0) 2021-05-17T21:54:31.1813722Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1814523Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.2.0) 2021-05-17T21:54:31.1815305Z sys 3.4 2020-07-23 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1816126Z sysreqs 1.0.0.9000 2021-05-17 [1] Github (r-hub/sysreqs@f068afa) 2021-05-17T21:54:31.1816957Z tcltk 4.2.0 2021-05-16 [2] local 2021-05-17T21:54:31.1817752Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1818541Z tibble 3.1.2 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1819378Z tic 0.10.0 2021-05-17 [1] Github (ropensci/tic@3b4dfb8) 2021-05-17T21:54:31.1820205Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1821003Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1821824Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1822595Z tools 4.2.0 2021-05-16 [2] local 2021-05-17T21:54:31.1823386Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1824164Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1824920Z utils * 4.2.0 2021-05-16 [2] local 2021-05-17T21:54:31.1825695Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1826717Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1827503Z whisker 0.4 2019-08-28 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1828286Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1829062Z xfun 0.23 2021-05-15 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1829818Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1830601Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1831374Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1832129Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-17T21:54:31.1832430Z 2021-05-17T21:54:31.1832875Z [1] /home/runner/work/_temp/Library 2021-05-17T21:54:31.1833381Z [2] /opt/R/devel/lib/R/library 2021-05-17T21:54:31.1863467Z ##[group]Run Rscript -e 'tic::script()' 2021-05-17T21:54:31.1864033Z Rscript -e 'tic::script()' 2021-05-17T21:54:31.1864448Z ls -l check 2021-05-17T21:54:31.1906788Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-17T21:54:31.1907268Z env: 2021-05-17T21:54:31.1907696Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:54:31.1908148Z TIC_DEPLOY_KEY: 2021-05-17T21:54:31.1909018Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:54:31.1910719Z GITHUB_PAT: *** 2021-05-17T21:54:31.1911501Z COVERALLS_TOKEN: *** 2021-05-17T21:54:31.1911959Z continue-on-error: true 2021-05-17T21:54:31.1912409Z VDIFFR_RUN_TESTS: 2021-05-17T21:54:31.1912868Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:54:31.1913283Z TZ: UTC 2021-05-17T21:54:31.1913650Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:54:31.1914031Z NOT_CRAN: true 2021-05-17T21:54:31.1914389Z ##[endgroup] 2021-05-17T21:54:31.4474826Z ✔ Loading tic stage configuration from tic.R 2021-05-17T21:54:31.5732363Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-17T21:54:31.5734024Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-17T21:54:31.5735020Z timeout = Inf, check_dir = "check") 2021-05-17T21:54:31.6330836Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-17T21:54:31.8401206Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-17T21:54:31.8535383Z * preparing ‘aal’: 2021-05-17T21:54:31.8631876Z * checking DESCRIPTION meta-information ... OK 2021-05-17T21:54:31.9458902Z * installing the package to build vignettes 2021-05-17T21:54:37.5114575Z * creating vignettes ... OK 2021-05-17T21:54:37.5391788Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:54:37.5399508Z * checking for empty or unneeded directories 2021-05-17T21:54:37.5489692Z * building ‘aal_0.1.1.tar.gz’ 2021-05-17T21:54:37.5808661Z 2021-05-17T21:54:37.7297338Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-17T21:54:37.9338398Z * using log directory ‘/home/runner/work/aal/aal/check/aal.Rcheck’ 2021-05-17T21:54:37.9339924Z * using R Under development (unstable) (2021-05-15 r80301) 2021-05-17T21:54:37.9357362Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-17T21:54:37.9358464Z * using session charset: UTF-8 2021-05-17T21:54:37.9788887Z * using option ‘--as-cran’ 2021-05-17T21:54:37.9809728Z * checking for file ‘aal/DESCRIPTION’ ... OK 2021-05-17T21:54:37.9814510Z * checking extension type ... Package 2021-05-17T21:54:37.9819793Z * this is package ‘aal’ version ‘0.1.1’ 2021-05-17T21:54:37.9824897Z * package encoding: UTF-8 2021-05-17T21:54:37.9851491Z * checking package namespace information ... OK 2021-05-17T21:54:53.0736332Z * checking package dependencies ... OK 2021-05-17T21:54:53.0745839Z * checking if this is a source package ... OK 2021-05-17T21:54:53.0747083Z * checking if there is a namespace ... OK 2021-05-17T21:54:53.0747918Z * checking for executable files ... OK 2021-05-17T21:54:53.0748787Z * checking for hidden files and directories ... OK 2021-05-17T21:54:53.0749651Z * checking for portable file names ... OK 2021-05-17T21:54:53.0750597Z * checking for sufficient/correct file permissions ... OK 2021-05-17T21:54:53.0751846Z * checking serialization versions ... OK 2021-05-17T21:54:55.6947580Z * checking whether package ‘aal’ can be installed ... OK 2021-05-17T21:54:55.6990872Z * checking installed package size ... OK 2021-05-17T21:54:55.7747481Z * checking package directory ... OK 2021-05-17T21:54:55.7748529Z * checking for future file timestamps ... OK 2021-05-17T21:54:55.7749837Z * checking ‘build’ directory ... OK 2021-05-17T21:54:55.9261839Z * checking DESCRIPTION meta-information ... OK 2021-05-17T21:54:55.9263177Z * checking top-level files ... OK 2021-05-17T21:54:55.9264198Z * checking for left-over files ... OK 2021-05-17T21:54:56.0859977Z * checking index information ... OK 2021-05-17T21:54:56.3066661Z * checking package subdirectories ... OK 2021-05-17T21:54:56.3508567Z * checking R files for non-ASCII characters ... OK 2021-05-17T21:54:56.3970820Z * checking R files for syntax errors ... OK 2021-05-17T21:54:57.0781154Z * checking whether the package can be loaded ... OK 2021-05-17T21:54:57.7387944Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-17T21:54:58.3961461Z * checking whether the package can be unloaded cleanly ... OK 2021-05-17T21:54:59.0575640Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-17T21:54:59.6965890Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-17T21:55:00.3942885Z * checking loading without being on the library search path ... OK 2021-05-17T21:55:01.0749129Z * checking dependencies in R code ... OK 2021-05-17T21:55:02.1382379Z * checking S3 generic/method consistency ... OK 2021-05-17T21:55:02.7708280Z * checking replacement functions ... OK 2021-05-17T21:55:03.4124491Z * checking foreign function calls ... OK 2021-05-17T21:55:07.2320883Z * checking R code for possible problems ... OK 2021-05-17T21:55:07.4192137Z * checking Rd files ... OK 2021-05-17T21:55:07.4648914Z * checking Rd metadata ... OK 2021-05-17T21:55:07.5233861Z * checking Rd line widths ... OK 2021-05-17T21:55:07.6120783Z * checking Rd cross-references ... OK 2021-05-17T21:55:08.2726716Z * checking for missing documentation entries ... OK 2021-05-17T21:55:10.2166527Z * checking for code/documentation mismatches ... OK 2021-05-17T21:55:11.3723970Z * checking Rd \usage sections ... OK 2021-05-17T21:55:11.4381433Z * checking Rd contents ... OK 2021-05-17T21:55:11.5143237Z * checking for unstated dependencies in examples ... OK 2021-05-17T21:55:11.5439134Z * checking contents of ‘data’ directory ... OK 2021-05-17T21:55:11.7429195Z * checking data for non-ASCII characters ... OK 2021-05-17T21:55:11.7443384Z * checking LazyData ... OK 2021-05-17T21:55:11.9176988Z * checking data for ASCII and uncompressed saves ... OK 2021-05-17T21:55:11.9222732Z * checking installed files from ‘inst/doc’ ... OK 2021-05-17T21:55:11.9253634Z * checking files in ‘vignettes’ ... OK 2021-05-17T21:55:13.6459320Z * checking examples ... OK 2021-05-17T21:55:13.7100195Z * checking for unstated dependencies in ‘tests’ ... OK 2021-05-17T21:55:13.8684371Z * checking tests ... 2021-05-17T21:55:15.1303447Z Running ‘testthat.R’ 2021-05-17T21:55:15.1349277Z OK 2021-05-17T21:55:15.3034463Z * checking for unstated dependencies in vignettes ... OK 2021-05-17T21:55:15.3067705Z * checking package vignettes in ‘inst/doc’ ... OK 2021-05-17T21:55:18.2108300Z * checking re-building of vignette outputs ... OK 2021-05-17T21:55:20.1644969Z * checking PDF version of manual ... OK 2021-05-17T21:55:20.1646718Z * checking for non-standard things in the check directory ... OK 2021-05-17T21:55:20.1647616Z * checking for detritus in the temp directory ... OK 2021-05-17T21:55:20.1648207Z * DONE 2021-05-17T21:55:20.1654097Z 2021-05-17T21:55:20.1654746Z Status: OK 2021-05-17T21:55:20.1655107Z 2021-05-17T21:55:20.2521570Z ── R CMD check results ────────────────────────────────────────── aal 0.1.1 ──── 2021-05-17T21:55:20.2538398Z Duration: 42.7s 2021-05-17T21:55:20.2538810Z 2021-05-17T21:55:20.2549734Z 0 errors ✔ | 0 warnings ✔ | 0 notes ✔ 2021-05-17T21:55:20.2639914Z total 672 2021-05-17T21:55:20.2641530Z drwxr-xr-x 6 runner docker 4096 May 17 21:55 aal.Rcheck 2021-05-17T21:55:20.2643006Z -rw-r--r-- 1 runner docker 312258 May 17 21:54 aal_0.1.1.tar.gz 2021-05-17T21:55:20.2658251Z -rw-r--r-- 1 runner docker 365496 May 17 21:54 aal_0.1.1_R_x86_64-pc-linux-gnu.tar.gz 2021-05-17T21:55:20.2690071Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-17T21:55:20.2690796Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-17T21:55:20.2733000Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-17T21:55:20.2733476Z env: 2021-05-17T21:55:20.2733905Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:55:20.2734346Z TIC_DEPLOY_KEY: 2021-05-17T21:55:20.2735124Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:55:20.2736739Z GITHUB_PAT: *** 2021-05-17T21:55:20.2737505Z COVERALLS_TOKEN: *** 2021-05-17T21:55:20.2737977Z continue-on-error: true 2021-05-17T21:55:20.2738426Z VDIFFR_RUN_TESTS: 2021-05-17T21:55:20.2738877Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:55:20.2739319Z TZ: UTC 2021-05-17T21:55:20.2739673Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:55:20.2740066Z NOT_CRAN: true 2021-05-17T21:55:20.2740421Z ##[endgroup] 2021-05-17T21:55:20.2831736Z 2021-05-17T21:55:20.2833370Z R Under development (unstable) (2021-05-15 r80301) -- "Unsuffered Consequences" 2021-05-17T21:55:20.2834291Z Copyright (C) 2021 The R Foundation for Statistical Computing 2021-05-17T21:55:20.2835144Z Platform: x86_64-pc-linux-gnu (64-bit) 2021-05-17T21:55:20.2835492Z 2021-05-17T21:55:20.2836107Z R is free software and comes with ABSOLUTELY NO WARRANTY. 2021-05-17T21:55:20.2846210Z You are welcome to redistribute it under certain conditions. 2021-05-17T21:55:20.2847371Z Type 'license()' or 'licence()' for distribution details. 2021-05-17T21:55:20.2847785Z 2021-05-17T21:55:20.2848362Z R is a collaborative project with many contributors. 2021-05-17T21:55:20.2849354Z Type 'contributors()' for more information and 2021-05-17T21:55:20.2850258Z 'citation()' on how to cite R or R packages in publications. 2021-05-17T21:55:20.2850676Z 2021-05-17T21:55:20.2851378Z Type 'demo()' for some demos, 'help()' for on-line help, or 2021-05-17T21:55:20.2852230Z 'help.start()' for an HTML browser interface to help. 2021-05-17T21:55:20.2852893Z Type 'q()' to quit R. 2021-05-17T21:55:20.2853149Z 2021-05-17T21:55:20.2853513Z > library(testthat) 2021-05-17T21:55:20.2853926Z > library(aal) 2021-05-17T21:55:20.2854241Z > 2021-05-17T21:55:20.2854599Z > test_check("aal") 2021-05-17T21:55:20.2855064Z [ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ] 2021-05-17T21:55:20.2855422Z > 2021-05-17T21:55:20.2855767Z > proc.time() 2021-05-17T21:55:20.2856197Z user system elapsed 2021-05-17T21:55:20.2856622Z 1.159 0.082 1.230 2021-05-17T21:55:20.2886472Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-05-17T21:55:20.2887026Z Rscript -e "tic::before_deploy()" 2021-05-17T21:55:20.2927210Z shell: /usr/bin/bash -e {0} 2021-05-17T21:55:20.2927592Z env: 2021-05-17T21:55:20.2928016Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:55:20.2928468Z TIC_DEPLOY_KEY: 2021-05-17T21:55:20.2929249Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:55:20.2930488Z GITHUB_PAT: *** 2021-05-17T21:55:20.2931245Z COVERALLS_TOKEN: *** 2021-05-17T21:55:20.2931717Z continue-on-error: true 2021-05-17T21:55:20.2932158Z VDIFFR_RUN_TESTS: 2021-05-17T21:55:20.2932624Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:55:20.2933057Z TZ: UTC 2021-05-17T21:55:20.2933412Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:55:20.2933807Z NOT_CRAN: true 2021-05-17T21:55:20.2934152Z ##[endgroup] 2021-05-17T21:55:20.5492715Z ✔ Loading tic stage configuration from tic.R 2021-05-17T21:55:20.6695448Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-05-17T21:55:20.6695979Z with: 2021-05-17T21:55:20.6696772Z upload_url: https://uploads.github.com/repos/neuroconductor/aal/releases/43088283/assets{?name,label} 2021-05-17T21:55:20.6697717Z asset_path: check/aal_0.1.1_R_x86_64-pc-linux-gnu.tar.gz 2021-05-17T21:55:20.6698467Z asset_name: aal_0.1.1_R_x86_64-pc-linux-gnu_R4.1.tar.gz 2021-05-17T21:55:20.6699088Z asset_content_type: application/octet-stream 2021-05-17T21:55:20.6699559Z env: 2021-05-17T21:55:20.6699974Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:55:20.6700412Z TIC_DEPLOY_KEY: 2021-05-17T21:55:20.6701190Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:55:20.6702677Z GITHUB_PAT: *** 2021-05-17T21:55:20.6703534Z COVERALLS_TOKEN: *** 2021-05-17T21:55:20.6703997Z continue-on-error: true 2021-05-17T21:55:20.6704451Z VDIFFR_RUN_TESTS: 2021-05-17T21:55:20.6704942Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:55:20.6705364Z TZ: UTC 2021-05-17T21:55:20.6705747Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:55:20.6706356Z NOT_CRAN: true 2021-05-17T21:55:20.6707251Z GITHUB_TOKEN: *** 2021-05-17T21:55:20.6707628Z ##[endgroup] 2021-05-17T21:55:21.2164474Z ##[group]Run Rscript -e "tic::deploy()" 2021-05-17T21:55:21.2165014Z Rscript -e "tic::deploy()" 2021-05-17T21:55:21.2207361Z shell: /usr/bin/bash -e {0} 2021-05-17T21:55:21.2207727Z env: 2021-05-17T21:55:21.2208154Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:55:21.2208597Z TIC_DEPLOY_KEY: 2021-05-17T21:55:21.2209383Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:55:21.2210994Z GITHUB_PAT: *** 2021-05-17T21:55:21.2211824Z COVERALLS_TOKEN: *** 2021-05-17T21:55:21.2212299Z continue-on-error: true 2021-05-17T21:55:21.2212749Z VDIFFR_RUN_TESTS: 2021-05-17T21:55:21.2213201Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:55:21.2213629Z TZ: UTC 2021-05-17T21:55:21.2213984Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:55:21.2214377Z NOT_CRAN: true 2021-05-17T21:55:21.2214733Z ##[endgroup] 2021-05-17T21:55:21.4785200Z ✔ Loading tic stage configuration from tic.R 2021-05-17T21:55:21.5988844Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-05-17T21:55:21.5989526Z Rscript -e "tic::after_deploy()" 2021-05-17T21:55:21.6032396Z shell: /usr/bin/bash -e {0} 2021-05-17T21:55:21.6032766Z env: 2021-05-17T21:55:21.6033188Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:55:21.6033647Z TIC_DEPLOY_KEY: 2021-05-17T21:55:21.6034418Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:55:21.6035798Z GITHUB_PAT: *** 2021-05-17T21:55:21.6036582Z COVERALLS_TOKEN: *** 2021-05-17T21:55:21.6037039Z continue-on-error: true 2021-05-17T21:55:21.6037494Z VDIFFR_RUN_TESTS: 2021-05-17T21:55:21.6037945Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:55:21.6038373Z TZ: UTC 2021-05-17T21:55:21.6038741Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:55:21.6039125Z NOT_CRAN: true 2021-05-17T21:55:21.6039485Z ##[endgroup] 2021-05-17T21:55:21.8627723Z ✔ Loading tic stage configuration from tic.R 2021-05-17T21:55:22.1330626Z Post job cleanup. 2021-05-17T21:55:22.1743338Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-17T21:55:22.1855796Z Post job cleanup. 2021-05-17T21:55:22.2734739Z [command]/usr/bin/git version 2021-05-17T21:55:22.2826456Z git version 2.31.1 2021-05-17T21:55:22.2861750Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-17T21:55:22.2904947Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-17T21:55:22.3132535Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-17T21:55:22.3172728Z http.https://github.com/.extraheader 2021-05-17T21:55:22.3183073Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-17T21:55:22.3228009Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-17T21:55:22.3498077Z Cleaning up orphan processes