2021-05-18T14:12:59.6116194Z ##[section]Starting: Request a runner to run this job 2021-05-18T14:13:00.2485713Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-18T14:13:00.3551141Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-18T14:13:00.4714173Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-18T14:13:00.6359113Z ##[section]Finishing: Request a runner to run this job 2021-05-18T14:13:08.8739105Z Current runner version: '2.278.0' 2021-05-18T14:13:08.8762726Z ##[group]Operating System 2021-05-18T14:13:08.8763589Z Ubuntu 2021-05-18T14:13:08.8764051Z 20.04.2 2021-05-18T14:13:08.8764444Z LTS 2021-05-18T14:13:08.8764931Z ##[endgroup] 2021-05-18T14:13:08.8765499Z ##[group]Virtual Environment 2021-05-18T14:13:08.8766105Z Environment: ubuntu-20.04 2021-05-18T14:13:08.8766692Z Version: 20210510.0 2021-05-18T14:13:08.8767628Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210510.0/images/linux/Ubuntu2004-README.md 2021-05-18T14:13:08.8768959Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210510.0 2021-05-18T14:13:08.8769825Z ##[endgroup] 2021-05-18T14:13:08.8771602Z ##[group]GITHUB_TOKEN Permissions 2021-05-18T14:13:08.8772697Z Actions: write 2021-05-18T14:13:08.8773230Z Checks: write 2021-05-18T14:13:08.8773738Z Contents: write 2021-05-18T14:13:08.8774250Z Deployments: write 2021-05-18T14:13:08.8774864Z Issues: write 2021-05-18T14:13:08.8775392Z Metadata: read 2021-05-18T14:13:08.8775913Z Packages: write 2021-05-18T14:13:08.8776476Z PullRequests: write 2021-05-18T14:13:08.8777064Z RepositoryProjects: write 2021-05-18T14:13:08.8777705Z SecurityEvents: write 2021-05-18T14:13:08.8778229Z Statuses: write 2021-05-18T14:13:08.8778844Z ##[endgroup] 2021-05-18T14:13:08.8781521Z Prepare workflow directory 2021-05-18T14:13:08.9718977Z Prepare all required actions 2021-05-18T14:13:08.9728976Z Getting action download info 2021-05-18T14:13:09.3560309Z Download action repository 'actions/checkout@v2' 2021-05-18T14:13:11.0794219Z Download action repository 'r-lib/actions@master' 2021-05-18T14:13:11.6476409Z Download action repository 'adigherman/actions@master' 2021-05-18T14:13:12.6007629Z Download action repository 'msys2/setup-msys2@v2' 2021-05-18T14:13:12.7701421Z Download action repository 'actions/cache@v1' 2021-05-18T14:13:12.9175145Z Download action repository 'actions/upload-artifact@master' 2021-05-18T14:13:13.2138243Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-18T14:13:13.6587179Z ##[group]Run actions/checkout@v2 2021-05-18T14:13:13.6587733Z with: 2021-05-18T14:13:13.6588254Z repository: neuroconductor/freesurferformats 2021-05-18T14:13:13.6589241Z token: *** 2021-05-18T14:13:13.6589613Z ssh-strict: true 2021-05-18T14:13:13.6590086Z persist-credentials: true 2021-05-18T14:13:13.6590526Z clean: true 2021-05-18T14:13:13.6590894Z fetch-depth: 1 2021-05-18T14:13:13.6591247Z lfs: false 2021-05-18T14:13:13.6591615Z submodules: false 2021-05-18T14:13:13.6591958Z env: 2021-05-18T14:13:13.6592376Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:13:13.6592820Z TIC_DEPLOY_KEY: 2021-05-18T14:13:13.6593564Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:13:13.6594771Z GITHUB_PAT: *** 2021-05-18T14:13:13.6595522Z COVERALLS_TOKEN: *** 2021-05-18T14:13:13.6596124Z continue-on-error: true 2021-05-18T14:13:13.6596573Z VDIFFR_RUN_TESTS: 2021-05-18T14:13:13.6596958Z ##[endgroup] 2021-05-18T14:13:13.8740689Z Syncing repository: neuroconductor/freesurferformats 2021-05-18T14:13:13.8741614Z ##[group]Getting Git version info 2021-05-18T14:13:13.8742849Z Working directory is '/home/runner/work/freesurferformats/freesurferformats' 2021-05-18T14:13:13.8743617Z [command]/usr/bin/git version 2021-05-18T14:13:13.8864386Z git version 2.31.1 2021-05-18T14:13:13.8865732Z ##[endgroup] 2021-05-18T14:13:13.8866626Z Deleting the contents of '/home/runner/work/freesurferformats/freesurferformats' 2021-05-18T14:13:13.8878778Z ##[group]Initializing the repository 2021-05-18T14:13:13.8879576Z [command]/usr/bin/git init /home/runner/work/freesurferformats/freesurferformats 2021-05-18T14:13:13.8940695Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-18T14:13:13.8941486Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-18T14:13:13.8942234Z hint: of your new repositories, which will suppress this warning, call: 2021-05-18T14:13:13.8942960Z hint: 2021-05-18T14:13:13.8943648Z hint: git config --global init.defaultBranch 2021-05-18T14:13:13.8944133Z hint: 2021-05-18T14:13:13.8944782Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-18T14:13:13.8945676Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-18T14:13:13.8946233Z hint: 2021-05-18T14:13:13.8946707Z hint: git branch -m 2021-05-18T14:13:13.8948476Z Initialized empty Git repository in /home/runner/work/freesurferformats/freesurferformats/.git/ 2021-05-18T14:13:13.8950691Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/freesurferformats 2021-05-18T14:13:13.8998290Z ##[endgroup] 2021-05-18T14:13:13.8998869Z ##[group]Disabling automatic garbage collection 2021-05-18T14:13:13.9005448Z [command]/usr/bin/git config --local gc.auto 0 2021-05-18T14:13:13.9046434Z ##[endgroup] 2021-05-18T14:13:13.9054479Z ##[group]Setting up auth 2021-05-18T14:13:13.9063915Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-18T14:13:13.9103243Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-18T14:13:13.9434102Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-18T14:13:13.9482085Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-18T14:13:13.9700991Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-18T14:13:13.9749769Z ##[endgroup] 2021-05-18T14:13:13.9750317Z ##[group]Fetching the repository 2021-05-18T14:13:13.9762777Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +5ee873ef8a36fc9bc5d3a9054d32374678d85926:refs/tags/0.1.13.s 2021-05-18T14:13:14.1968217Z remote: Enumerating objects: 318, done. 2021-05-18T14:13:14.1968978Z remote: Counting objects: 0% (1/318) 2021-05-18T14:13:14.1969544Z remote: Counting objects: 1% (4/318) 2021-05-18T14:13:14.1970088Z remote: Counting objects: 2% (7/318) 2021-05-18T14:13:14.1973037Z remote: Counting objects: 3% (10/318) 2021-05-18T14:13:14.1973593Z remote: Counting objects: 4% (13/318) 2021-05-18T14:13:14.1974149Z remote: Counting objects: 5% (16/318) 2021-05-18T14:13:14.1974711Z remote: Counting objects: 6% (20/318) 2021-05-18T14:13:14.1975251Z remote: Counting objects: 7% (23/318) 2021-05-18T14:13:14.1975809Z remote: Counting objects: 8% (26/318) 2021-05-18T14:13:14.1976354Z remote: Counting objects: 9% (29/318) 2021-05-18T14:13:14.1976909Z remote: Counting objects: 10% (32/318) 2021-05-18T14:13:14.1977485Z remote: Counting objects: 11% (35/318) 2021-05-18T14:13:14.1978029Z remote: Counting objects: 12% (39/318) 2021-05-18T14:13:14.1978583Z remote: Counting objects: 13% (42/318) 2021-05-18T14:13:14.1979138Z remote: Counting objects: 14% (45/318) 2021-05-18T14:13:14.1979677Z remote: Counting objects: 15% (48/318) 2021-05-18T14:13:14.1980228Z remote: Counting objects: 16% (51/318) 2021-05-18T14:13:14.1980773Z remote: Counting objects: 17% (55/318) 2021-05-18T14:13:14.1981327Z remote: Counting objects: 18% (58/318) 2021-05-18T14:13:14.1981879Z remote: Counting objects: 19% (61/318) 2021-05-18T14:13:14.1982418Z remote: Counting objects: 20% (64/318) 2021-05-18T14:13:14.1982965Z remote: Counting objects: 21% (67/318) 2021-05-18T14:13:14.1983509Z remote: Counting objects: 22% (70/318) 2021-05-18T14:13:14.1984061Z remote: Counting objects: 23% (74/318) 2021-05-18T14:13:14.1984608Z remote: Counting objects: 24% (77/318) 2021-05-18T14:13:14.1985328Z remote: Counting objects: 25% (80/318) 2021-05-18T14:13:14.1985881Z remote: Counting objects: 26% (83/318) 2021-05-18T14:13:14.1986440Z remote: Counting objects: 27% (86/318) 2021-05-18T14:13:14.1986983Z remote: Counting objects: 28% (90/318) 2021-05-18T14:13:14.1987532Z remote: Counting objects: 29% (93/318) 2021-05-18T14:13:14.1988075Z remote: Counting objects: 30% (96/318) 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remote: Counting objects: 45% (144/318) 2021-05-18T14:13:14.1996456Z remote: Counting objects: 46% (147/318) 2021-05-18T14:13:14.1996950Z remote: Counting objects: 47% (150/318) 2021-05-18T14:13:14.1997429Z remote: Counting objects: 48% (153/318) 2021-05-18T14:13:14.1997919Z remote: Counting objects: 49% (156/318) 2021-05-18T14:13:14.1998414Z remote: Counting objects: 50% (159/318) 2021-05-18T14:13:14.1998991Z remote: Counting objects: 51% (163/318) 2021-05-18T14:13:14.1999486Z remote: Counting objects: 52% (166/318) 2021-05-18T14:13:14.1999979Z remote: Counting objects: 53% (169/318) 2021-05-18T14:13:14.2000451Z remote: Counting objects: 54% (172/318) 2021-05-18T14:13:14.2000937Z remote: Counting objects: 55% (175/318) 2021-05-18T14:13:14.2001412Z remote: Counting objects: 56% (179/318) 2021-05-18T14:13:14.2001904Z remote: Counting objects: 57% (182/318) 2021-05-18T14:13:14.2002394Z remote: Counting objects: 58% (185/318) 2021-05-18T14:13:14.2002870Z remote: Counting objects: 59% 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remote: Counting objects: 88% (280/318) 2021-05-18T14:13:14.2025469Z remote: Counting objects: 89% (284/318) 2021-05-18T14:13:14.2025961Z remote: Counting objects: 90% (287/318) 2021-05-18T14:13:14.2026450Z remote: Counting objects: 91% (290/318) 2021-05-18T14:13:14.2027662Z remote: Counting objects: 92% (293/318) 2021-05-18T14:13:14.2028176Z remote: Counting objects: 93% (296/318) 2021-05-18T14:13:14.2028667Z remote: Counting objects: 94% (299/318) 2021-05-18T14:13:14.2029153Z remote: Counting objects: 95% (303/318) 2021-05-18T14:13:14.2029629Z remote: Counting objects: 96% (306/318) 2021-05-18T14:13:14.2030116Z remote: Counting objects: 97% (309/318) 2021-05-18T14:13:14.2030597Z remote: Counting objects: 98% (312/318) 2021-05-18T14:13:14.2031071Z remote: Counting objects: 99% (315/318) 2021-05-18T14:13:14.2032294Z remote: Counting objects: 100% (318/318) 2021-05-18T14:13:14.2032823Z remote: Counting objects: 100% (318/318), done. 2021-05-18T14:13:14.2033358Z remote: Compressing 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(83/296) 2021-05-18T14:13:14.2056035Z remote: Compressing objects: 29% (86/296) 2021-05-18T14:13:14.2056563Z remote: Compressing objects: 30% (89/296) 2021-05-18T14:13:14.2057075Z remote: Compressing objects: 31% (92/296) 2021-05-18T14:13:14.2057606Z remote: Compressing objects: 32% (95/296) 2021-05-18T14:13:14.2058138Z remote: Compressing objects: 33% (98/296) 2021-05-18T14:13:14.2058657Z remote: Compressing objects: 34% (101/296) 2021-05-18T14:13:14.2059192Z remote: Compressing objects: 35% (104/296) 2021-05-18T14:13:14.2059713Z remote: Compressing objects: 36% (107/296) 2021-05-18T14:13:14.2061102Z remote: Compressing objects: 37% (110/296) 2021-05-18T14:13:14.2062499Z remote: Compressing objects: 38% (113/296) 2021-05-18T14:13:14.2063025Z remote: Compressing objects: 39% (116/296) 2021-05-18T14:13:14.2063576Z remote: Compressing objects: 40% (119/296) 2021-05-18T14:13:14.2064109Z remote: Compressing objects: 41% (122/296) 2021-05-18T14:13:14.2064621Z remote: Compressing objects: 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objects: 56% (166/296) 2021-05-18T14:13:14.2082192Z remote: Compressing objects: 57% (169/296) 2021-05-18T14:13:14.2082712Z remote: Compressing objects: 58% (172/296) 2021-05-18T14:13:14.2083251Z remote: Compressing objects: 59% (175/296) 2021-05-18T14:13:14.2083771Z remote: Compressing objects: 60% (178/296) 2021-05-18T14:13:14.2084304Z remote: Compressing objects: 61% (181/296) 2021-05-18T14:13:14.2084840Z remote: Compressing objects: 62% (184/296) 2021-05-18T14:13:14.2085359Z remote: Compressing objects: 63% (187/296) 2021-05-18T14:13:14.2085892Z remote: Compressing objects: 64% (190/296) 2021-05-18T14:13:14.2086426Z remote: Compressing objects: 65% (193/296) 2021-05-18T14:13:15.0785882Z remote: Compressing objects: 66% (196/296) 2021-05-18T14:13:15.0795085Z remote: Compressing objects: 67% (199/296) 2021-05-18T14:13:15.0795866Z remote: Compressing objects: 68% (202/296) 2021-05-18T14:13:15.0796744Z remote: Compressing objects: 69% (205/296) 2021-05-18T14:13:15.0797330Z remote: Compressing objects: 70% (208/296) 2021-05-18T14:13:15.0797921Z remote: Compressing objects: 71% (211/296) 2021-05-18T14:13:15.0798497Z remote: Compressing objects: 72% (214/296) 2021-05-18T14:13:15.0799075Z remote: Compressing objects: 73% (217/296) 2021-05-18T14:13:15.0799655Z remote: Compressing objects: 74% (220/296) 2021-05-18T14:13:15.0800231Z remote: Compressing objects: 75% (222/296) 2021-05-18T14:13:15.0800797Z remote: Compressing objects: 76% (225/296) 2021-05-18T14:13:15.0801375Z remote: Compressing objects: 77% (228/296) 2021-05-18T14:13:15.0802244Z remote: Compressing objects: 78% (231/296) 2021-05-18T14:13:15.0802820Z remote: Compressing objects: 79% (234/296) 2021-05-18T14:13:15.0803399Z remote: Compressing objects: 80% (237/296) 2021-05-18T14:13:15.0803972Z remote: Compressing objects: 81% (240/296) 2021-05-18T14:13:15.0808280Z remote: Compressing objects: 82% (243/296) 2021-05-18T14:13:15.0809975Z remote: Compressing objects: 83% (246/296) 2021-05-18T14:13:15.0810664Z remote: Compressing objects: 84% (249/296) 2021-05-18T14:13:15.0811342Z remote: Compressing objects: 85% (252/296) 2021-05-18T14:13:15.0811989Z remote: Compressing objects: 86% (255/296) 2021-05-18T14:13:15.0812651Z remote: Compressing objects: 87% (258/296) 2021-05-18T14:13:15.0813311Z remote: Compressing objects: 88% (261/296) 2021-05-18T14:13:15.0813957Z remote: Compressing objects: 89% (264/296) 2021-05-18T14:13:15.0814785Z remote: Compressing objects: 90% (267/296) 2021-05-18T14:13:15.0815546Z remote: Compressing objects: 91% (270/296) 2021-05-18T14:13:15.0816188Z remote: Compressing objects: 92% (273/296) 2021-05-18T14:13:15.0816844Z remote: Compressing objects: 93% (276/296) 2021-05-18T14:13:15.0817506Z remote: Compressing objects: 94% (279/296) 2021-05-18T14:13:15.0818145Z remote: Compressing objects: 95% (282/296) 2021-05-18T14:13:15.0818949Z remote: Compressing objects: 96% (285/296) 2021-05-18T14:13:15.0819617Z remote: Compressing objects: 97% (288/296) 2021-05-18T14:13:15.0820100Z remote: Compressing objects: 98% (291/296) 2021-05-18T14:13:15.0820577Z remote: Compressing objects: 99% (294/296) 2021-05-18T14:13:15.0821055Z remote: Compressing objects: 100% (296/296) 2021-05-18T14:13:15.0821539Z remote: Compressing objects: 100% (296/296), done. 2021-05-18T14:13:15.0821993Z Receiving objects: 0% (1/318) 2021-05-18T14:13:15.0822560Z Receiving objects: 1% (4/318) 2021-05-18T14:13:15.0822959Z Receiving objects: 2% (7/318) 2021-05-18T14:13:15.0823347Z Receiving objects: 3% (10/318) 2021-05-18T14:13:15.0823725Z Receiving objects: 4% (13/318) 2021-05-18T14:13:15.0824113Z Receiving objects: 5% (16/318) 2021-05-18T14:13:15.0824503Z Receiving objects: 6% (20/318) 2021-05-18T14:13:15.0824881Z Receiving objects: 7% (23/318) 2021-05-18T14:13:15.0825265Z Receiving objects: 8% (26/318) 2021-05-18T14:13:15.0825640Z Receiving objects: 9% (29/318) 2021-05-18T14:13:15.0826026Z Receiving objects: 10% (32/318) 2021-05-18T14:13:15.0826412Z Receiving objects: 11% (35/318) 2021-05-18T14:13:15.0826790Z Receiving objects: 12% (39/318) 2021-05-18T14:13:15.0827179Z Receiving objects: 13% (42/318) 2021-05-18T14:13:15.0827555Z Receiving objects: 14% (45/318) 2021-05-18T14:13:15.0827937Z Receiving objects: 15% (48/318) 2021-05-18T14:13:15.0828327Z Receiving objects: 16% (51/318) 2021-05-18T14:13:15.0828699Z Receiving objects: 17% (55/318) 2021-05-18T14:13:15.0829089Z Receiving objects: 18% (58/318) 2021-05-18T14:13:15.0829463Z Receiving objects: 19% (61/318) 2021-05-18T14:13:15.0829964Z Receiving objects: 20% (64/318) 2021-05-18T14:13:15.0830340Z Receiving objects: 21% (67/318) 2021-05-18T14:13:15.0830705Z Receiving objects: 22% (70/318) 2021-05-18T14:13:15.0831125Z Receiving objects: 23% (74/318) 2021-05-18T14:13:15.0831488Z Receiving objects: 24% (77/318) 2021-05-18T14:13:15.0831862Z Receiving objects: 25% (80/318) 2021-05-18T14:13:15.0832241Z Receiving objects: 26% (83/318) 2021-05-18T14:13:15.0832605Z Receiving objects: 27% (86/318) 2021-05-18T14:13:15.0832978Z Receiving objects: 28% (90/318) 2021-05-18T14:13:15.0833514Z Receiving objects: 29% (93/318) 2021-05-18T14:13:15.0833902Z Receiving objects: 30% (96/318) 2021-05-18T14:13:15.0834290Z Receiving objects: 31% (99/318) 2021-05-18T14:13:15.0834669Z Receiving objects: 32% (102/318) 2021-05-18T14:13:15.0835060Z Receiving objects: 33% (105/318) 2021-05-18T14:13:15.0835510Z Receiving objects: 34% (109/318) 2021-05-18T14:13:15.0836012Z Receiving objects: 35% (112/318) 2021-05-18T14:13:15.0836404Z Receiving objects: 36% (115/318) 2021-05-18T14:13:15.0836780Z Receiving objects: 37% (118/318) 2021-05-18T14:13:15.0837165Z Receiving objects: 38% (121/318) 2021-05-18T14:13:15.0837540Z Receiving objects: 39% (125/318) 2021-05-18T14:13:15.0837929Z Receiving objects: 40% (128/318) 2021-05-18T14:13:15.0838315Z Receiving objects: 41% (131/318) 2021-05-18T14:13:15.0838689Z Receiving objects: 42% (134/318) 2021-05-18T14:13:15.0839078Z Receiving objects: 43% (137/318) 2021-05-18T14:13:15.0839452Z Receiving objects: 44% (140/318) 2021-05-18T14:13:15.0839838Z Receiving objects: 45% (144/318) 2021-05-18T14:13:15.0840226Z Receiving objects: 46% (147/318) 2021-05-18T14:13:15.0840602Z Receiving objects: 47% (150/318) 2021-05-18T14:13:15.0840986Z Receiving objects: 48% (153/318) 2021-05-18T14:13:15.0841360Z Receiving objects: 49% (156/318) 2021-05-18T14:13:15.0841745Z Receiving objects: 50% (159/318) 2021-05-18T14:13:15.0842141Z Receiving objects: 51% (163/318) 2021-05-18T14:13:15.0842517Z Receiving objects: 52% (166/318) 2021-05-18T14:13:15.0842905Z Receiving objects: 53% (169/318) 2021-05-18T14:13:15.0843289Z Receiving objects: 54% (172/318) 2021-05-18T14:13:15.0843663Z Receiving objects: 55% (175/318) 2021-05-18T14:13:15.0844055Z Receiving objects: 56% (179/318) 2021-05-18T14:13:15.0844429Z Receiving objects: 57% (182/318) 2021-05-18T14:13:15.0844815Z Receiving objects: 58% (185/318) 2021-05-18T14:13:15.0845202Z Receiving objects: 59% (188/318) 2021-05-18T14:13:15.0845688Z Receiving objects: 60% (191/318) 2021-05-18T14:13:15.0846045Z Receiving objects: 61% (194/318) 2021-05-18T14:13:15.0846390Z Receiving objects: 62% (198/318) 2021-05-18T14:13:15.0846750Z Receiving objects: 63% (201/318) 2021-05-18T14:13:15.0847106Z Receiving objects: 64% (204/318) 2021-05-18T14:13:15.0847452Z Receiving objects: 65% (207/318) 2021-05-18T14:13:15.0847812Z Receiving objects: 66% (210/318) 2021-05-18T14:13:15.0848225Z Receiving objects: 67% (214/318) 2021-05-18T14:13:15.0848585Z Receiving objects: 68% (217/318) 2021-05-18T14:13:15.0848943Z Receiving objects: 69% (220/318) 2021-05-18T14:13:15.0849285Z Receiving objects: 70% (223/318) 2021-05-18T14:13:15.0849640Z Receiving objects: 71% (226/318) 2021-05-18T14:13:15.0849989Z Receiving objects: 72% (229/318) 2021-05-18T14:13:15.0850344Z Receiving objects: 73% (233/318) 2021-05-18T14:13:15.0850699Z Receiving objects: 74% (236/318) 2021-05-18T14:13:15.0851042Z Receiving objects: 75% (239/318) 2021-05-18T14:13:15.0851399Z Receiving objects: 76% (242/318) 2021-05-18T14:13:15.0851744Z Receiving objects: 77% (245/318) 2021-05-18T14:13:15.0852100Z Receiving objects: 78% (249/318) 2021-05-18T14:13:15.0852456Z Receiving objects: 79% (252/318) 2021-05-18T14:13:15.0852798Z Receiving objects: 80% (255/318) 2021-05-18T14:13:15.0853154Z Receiving objects: 81% (258/318) 2021-05-18T14:13:15.0853501Z Receiving objects: 82% (261/318) 2021-05-18T14:13:15.0854033Z Receiving objects: 83% (264/318) 2021-05-18T14:13:15.0854420Z Receiving objects: 84% (268/318) 2021-05-18T14:13:15.0854794Z Receiving objects: 85% (271/318) 2021-05-18T14:13:15.0855185Z Receiving objects: 86% (274/318) 2021-05-18T14:13:15.0855560Z Receiving objects: 87% (277/318) 2021-05-18T14:13:15.0855949Z Receiving objects: 88% (280/318) 2021-05-18T14:13:15.0856340Z Receiving objects: 89% (284/318) 2021-05-18T14:13:15.0856713Z Receiving objects: 90% (287/318) 2021-05-18T14:13:15.0857100Z Receiving objects: 91% (290/318) 2021-05-18T14:13:15.0857491Z Receiving objects: 92% (293/318) 2021-05-18T14:13:15.0857898Z Receiving objects: 93% (296/318) 2021-05-18T14:13:15.0858273Z Receiving objects: 94% (299/318) 2021-05-18T14:13:15.0858662Z Receiving objects: 95% (303/318) 2021-05-18T14:13:15.0859034Z Receiving objects: 96% (306/318) 2021-05-18T14:13:15.0859425Z Receiving objects: 97% (309/318) 2021-05-18T14:13:15.0859810Z Receiving objects: 98% (312/318) 2021-05-18T14:13:15.0860250Z Receiving objects: 99% (315/318) 2021-05-18T14:13:15.0861269Z remote: Total 318 (delta 51), reused 119 (delta 19), pack-reused 0 2021-05-18T14:13:15.0861759Z Receiving objects: 100% (318/318) 2021-05-18T14:13:15.0862198Z Receiving objects: 100% (318/318), 3.40 MiB | 18.23 MiB/s, done. 2021-05-18T14:13:15.0862633Z Resolving deltas: 0% (0/51) 2021-05-18T14:13:15.0862996Z Resolving deltas: 1% (1/51) 2021-05-18T14:13:15.0863373Z Resolving deltas: 3% (2/51) 2021-05-18T14:13:15.0863747Z Resolving deltas: 5% (3/51) 2021-05-18T14:13:15.0864107Z Resolving deltas: 7% (4/51) 2021-05-18T14:13:15.0864484Z Resolving deltas: 9% (5/51) 2021-05-18T14:13:15.0864842Z Resolving deltas: 11% (6/51) 2021-05-18T14:13:15.0865215Z Resolving deltas: 13% (7/51) 2021-05-18T14:13:15.0865586Z Resolving deltas: 15% (8/51) 2021-05-18T14:13:15.0865947Z Resolving deltas: 17% (9/51) 2021-05-18T14:13:15.0866446Z Resolving deltas: 19% (10/51) 2021-05-18T14:13:15.0866797Z Resolving deltas: 21% (11/51) 2021-05-18T14:13:15.0867167Z Resolving deltas: 23% (12/51) 2021-05-18T14:13:15.0867531Z Resolving deltas: 25% (13/51) 2021-05-18T14:13:15.0867885Z Resolving deltas: 27% (14/51) 2021-05-18T14:13:15.0868245Z Resolving deltas: 29% (15/51) 2021-05-18T14:13:15.0868597Z Resolving deltas: 31% (16/51) 2021-05-18T14:13:15.0868959Z Resolving deltas: 33% (17/51) 2021-05-18T14:13:15.0869320Z Resolving deltas: 35% (18/51) 2021-05-18T14:13:15.0869672Z Resolving deltas: 37% (19/51) 2021-05-18T14:13:15.0870033Z Resolving deltas: 39% (20/51) 2021-05-18T14:13:15.0870388Z Resolving deltas: 41% (21/51) 2021-05-18T14:13:15.0870749Z Resolving deltas: 43% (22/51) 2021-05-18T14:13:15.0871118Z Resolving deltas: 45% (23/51) 2021-05-18T14:13:15.0871470Z Resolving deltas: 47% (24/51) 2021-05-18T14:13:15.0871990Z Resolving deltas: 49% (25/51) 2021-05-18T14:13:15.0872350Z Resolving deltas: 50% (26/51) 2021-05-18T14:13:15.0872723Z Resolving deltas: 52% (27/51) 2021-05-18T14:13:15.0873093Z Resolving deltas: 54% (28/51) 2021-05-18T14:13:15.0873526Z Resolving deltas: 56% (29/51) 2021-05-18T14:13:15.0873900Z Resolving deltas: 58% (30/51) 2021-05-18T14:13:15.0874260Z Resolving deltas: 60% (31/51) 2021-05-18T14:13:15.0874629Z Resolving deltas: 62% (32/51) 2021-05-18T14:13:15.0875002Z Resolving deltas: 64% (33/51) 2021-05-18T14:13:15.0875361Z Resolving deltas: 66% (34/51) 2021-05-18T14:13:15.0875730Z Resolving deltas: 68% (35/51) 2021-05-18T14:13:15.0876231Z Resolving deltas: 70% (36/51) 2021-05-18T14:13:15.0876725Z Resolving deltas: 72% (37/51) 2021-05-18T14:13:15.0877086Z Resolving deltas: 74% (38/51) 2021-05-18T14:13:15.0877439Z Resolving deltas: 76% (39/51) 2021-05-18T14:13:15.0877800Z Resolving deltas: 78% (40/51) 2021-05-18T14:13:15.0878149Z Resolving deltas: 80% (41/51) 2021-05-18T14:13:15.0878515Z Resolving deltas: 82% (42/51) 2021-05-18T14:13:15.0878877Z Resolving deltas: 84% (43/51) 2021-05-18T14:13:15.0879231Z Resolving deltas: 86% (44/51) 2021-05-18T14:13:15.0879593Z Resolving deltas: 88% (45/51) 2021-05-18T14:13:15.0879948Z Resolving deltas: 90% (46/51) 2021-05-18T14:13:15.0880311Z Resolving deltas: 92% (47/51) 2021-05-18T14:13:15.0880672Z Resolving deltas: 94% (48/51) 2021-05-18T14:13:15.0881023Z Resolving deltas: 96% (49/51) 2021-05-18T14:13:15.0881384Z Resolving deltas: 98% (50/51) 2021-05-18T14:13:15.0881742Z Resolving deltas: 100% (51/51) 2021-05-18T14:13:15.0882112Z Resolving deltas: 100% (51/51), done. 2021-05-18T14:13:15.0882702Z From https://github.com/neuroconductor/freesurferformats 2021-05-18T14:13:15.0883653Z * [new ref] 5ee873ef8a36fc9bc5d3a9054d32374678d85926 -> 0.1.13.s 2021-05-18T14:13:15.0884341Z ##[endgroup] 2021-05-18T14:13:15.0884733Z ##[group]Determining the checkout info 2021-05-18T14:13:15.0885099Z ##[endgroup] 2021-05-18T14:13:15.0885438Z ##[group]Checking out the ref 2021-05-18T14:13:15.0886033Z [command]/usr/bin/git checkout --progress --force refs/tags/0.1.13.s 2021-05-18T14:13:15.0886619Z Note: switching to 'refs/tags/0.1.13.s'. 2021-05-18T14:13:15.0886869Z 2021-05-18T14:13:15.0887515Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-18T14:13:15.0888101Z changes and commit them, and you can discard any commits you make in this 2021-05-18T14:13:15.0888677Z state without impacting any branches by switching back to a branch. 2021-05-18T14:13:15.0889016Z 2021-05-18T14:13:15.0889395Z If you want to create a new branch to retain commits you create, you may 2021-05-18T14:13:15.0890064Z do so (now or later) by using -c with the switch command. Example: 2021-05-18T14:13:15.0890374Z 2021-05-18T14:13:15.0890788Z git switch -c 2021-05-18T14:13:15.0891058Z 2021-05-18T14:13:15.0891354Z Or undo this operation with: 2021-05-18T14:13:15.0891585Z 2021-05-18T14:13:15.0891915Z git switch - 2021-05-18T14:13:15.0892108Z 2021-05-18T14:13:15.0892574Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-18T14:13:15.0892958Z 2021-05-18T14:13:15.0893285Z HEAD is now at 5ee873e Version id 198 stable 2021-05-18T14:13:15.0893658Z ##[endgroup] 2021-05-18T14:13:15.0894307Z [command]/usr/bin/git log -1 --format='%H' 2021-05-18T14:13:15.0894982Z '5ee873ef8a36fc9bc5d3a9054d32374678d85926' 2021-05-18T14:13:15.0973107Z ##[group]Run r-lib/actions/setup-r@master 2021-05-18T14:13:15.0973531Z with: 2021-05-18T14:13:15.0973912Z r-version: devel 2021-05-18T14:13:15.0974249Z Ncpus: 1 2021-05-18T14:13:15.0974684Z crayon.enabled: NULL 2021-05-18T14:13:15.0975211Z remove-openmp-macos: true 2021-05-18T14:13:15.0975739Z http-user-agent: default 2021-05-18T14:13:15.0976146Z install-r: true 2021-05-18T14:13:15.0976688Z windows-path-include-mingw: true 2021-05-18T14:13:15.0977179Z env: 2021-05-18T14:13:15.0977615Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:13:15.0978069Z TIC_DEPLOY_KEY: 2021-05-18T14:13:15.0978774Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:13:15.0980085Z GITHUB_PAT: *** 2021-05-18T14:13:15.0980850Z COVERALLS_TOKEN: *** 2021-05-18T14:13:15.0981281Z continue-on-error: true 2021-05-18T14:13:15.0981747Z VDIFFR_RUN_TESTS: 2021-05-18T14:13:15.0982095Z ##[endgroup] 2021-05-18T14:13:15.9599737Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-18T14:13:18.1286068Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-18T14:13:18.1294531Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-18T14:13:18.1303917Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-18T14:13:18.1909485Z Hit:4 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-18T14:13:18.2913129Z Hit:5 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-18T14:13:18.3914604Z Get:6 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-18T14:13:18.4165422Z Get:7 http://security.ubuntu.com/ubuntu focal-security InRelease [109 kB] 2021-05-18T14:13:18.4493448Z Get:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-18T14:13:18.5365522Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [983 kB] 2021-05-18T14:13:18.5702886Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [223 kB] 2021-05-18T14:13:18.5727015Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.3 kB] 2021-05-18T14:13:18.5779152Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-18T14:13:18.5780762Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [33.3 kB] 2021-05-18T14:13:18.5782256Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [777 kB] 2021-05-18T14:13:18.5887511Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [167 kB] 2021-05-18T14:13:18.5903943Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.5 kB] 2021-05-18T14:13:18.6933393Z Hit:17 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-18T14:13:19.0082203Z Get:18 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [656 kB] 2021-05-18T14:13:19.0197736Z Get:19 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.4 kB] 2021-05-18T14:13:19.0755757Z Get:20 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [132 kB] 2021-05-18T14:13:19.0796973Z Get:21 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7508 B] 2021-05-18T14:13:19.0799016Z Get:22 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [203 kB] 2021-05-18T14:13:19.0832800Z Get:23 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [29.7 kB] 2021-05-18T14:13:19.0859037Z Get:24 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [568 kB] 2021-05-18T14:13:19.0957658Z Get:25 http://security.ubuntu.com/ubuntu focal-security/universe Translation-en [85.5 kB] 2021-05-18T14:13:19.0991508Z Get:26 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.1 kB] 2021-05-18T14:13:27.8994410Z Fetched 4559 kB in 1s (3706 kB/s) 2021-05-18T14:13:28.5938182Z Reading package lists... 2021-05-18T14:13:28.6142037Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-18T14:13:30.2949136Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-18T14:13:30.3550365Z Reading package lists... 2021-05-18T14:13:30.4886270Z Building dependency tree... 2021-05-18T14:13:30.4899160Z Reading state information... 2021-05-18T14:13:30.6225073Z The following additional packages will be installed: 2021-05-18T14:13:30.6226740Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-18T14:13:30.6228205Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-18T14:13:30.6233947Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-18T14:13:30.6235727Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-18T14:13:30.6237701Z libcommon-sense-perl libconst-fast-perl libcontextual-return-perl 2021-05-18T14:13:30.6239205Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-18T14:13:30.6240768Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-18T14:13:30.6242448Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-18T14:13:30.6243991Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-18T14:13:30.6245475Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-18T14:13:30.6246953Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-18T14:13:30.6248529Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-18T14:13:30.6250150Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-18T14:13:30.6251808Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-18T14:13:30.6253272Z libipc-run-perl libjson-maybexs-perl libjson-perl libjson-xs-perl 2021-05-18T14:13:30.6254674Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-18T14:13:30.6256098Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-18T14:13:30.6257736Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-18T14:13:30.6259447Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-18T14:13:30.6260990Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-18T14:13:30.6262318Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-18T14:13:30.6263743Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-18T14:13:30.6265331Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-18T14:13:30.6266966Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-18T14:13:30.6268796Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-18T14:13:30.6270362Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-18T14:13:30.6271895Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-18T14:13:30.6273484Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-18T14:13:30.6275032Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-18T14:13:30.6276884Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-18T14:13:30.6278515Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-18T14:13:30.6280165Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-18T14:13:30.6281874Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-18T14:13:30.6283428Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-18T14:13:30.6284942Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-18T14:13:30.6286663Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-18T14:13:30.6288149Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-18T14:13:30.6289377Z python3-magic python3-unidiff python3-xdg t1utils wdiff 2021-05-18T14:13:30.6290137Z Suggested packages: 2021-05-18T14:13:30.6290951Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-18T14:13:30.6292084Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-18T14:13:30.6293286Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-18T14:13:30.6294469Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-18T14:13:30.6295695Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-18T14:13:30.6296878Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-18T14:13:30.6298016Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-18T14:13:30.6299314Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-18T14:13:30.6300750Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-18T14:13:30.6302061Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-18T14:13:31.5833897Z The following NEW packages will be installed: 2021-05-18T14:13:31.5877829Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-18T14:13:31.5879301Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-18T14:13:31.5880920Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-18T14:13:31.5882688Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-18T14:13:31.5884184Z libclone-perl libcommon-sense-perl libconst-fast-perl 2021-05-18T14:13:31.5885536Z libcontextual-return-perl libcpanel-json-xs-perl libcroco3 2021-05-18T14:13:31.5887014Z libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-18T14:13:31.5888563Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-18T14:13:31.5890214Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-18T14:13:31.5891742Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-18T14:13:31.5893036Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-18T14:13:31.5894503Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-18T14:13:31.5896161Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-18T14:13:31.5897696Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-18T14:13:31.5899779Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-18T14:13:31.5901290Z libjson-perl libjson-xs-perl liblinux-epoll-perl liblist-compare-perl 2021-05-18T14:13:31.5903015Z liblist-moreutils-perl liblist-someutils-perl liblist-someutils-xs-perl 2021-05-18T14:13:31.5904797Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-18T14:13:31.5906385Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-18T14:13:31.5907766Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-18T14:13:31.5909040Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-18T14:13:31.5910302Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-18T14:13:31.5911734Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-18T14:13:31.5913265Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-18T14:13:31.5914662Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-18T14:13:31.5916176Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-18T14:13:31.5917678Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-18T14:13:31.5919107Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-18T14:13:31.5920696Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-18T14:13:31.5922208Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-18T14:13:31.5923671Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-18T14:13:31.5926790Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-18T14:13:31.5928209Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-18T14:13:31.5929472Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-18T14:13:31.5937598Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-18T14:13:31.5938920Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-18T14:13:31.5940112Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-18T14:13:31.5941116Z python3-magic python3-unidiff python3-xdg qpdf t1utils wdiff 2021-05-18T14:13:31.5941843Z 0 upgraded, 130 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:31.5942407Z Need to get 8648 kB of archives. 2021-05-18T14:13:31.5942980Z After this operation, 32.3 MB of additional disk space will be used. 2021-05-18T14:13:31.5944074Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-18T14:13:31.5945441Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-18T14:13:31.5946884Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-18T14:13:31.5948278Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-18T14:13:31.5949652Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-18T14:13:31.5951197Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-18T14:13:31.5952831Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-18T14:13:31.5954454Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-18T14:13:31.5956239Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-18T14:13:31.5957854Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-18T14:13:31.5959398Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-18T14:13:31.5960879Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-18T14:13:31.5962280Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-18T14:13:31.5963842Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-18T14:13:31.5965254Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-18T14:13:31.5966589Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-18T14:13:31.5967882Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-18T14:13:31.5969171Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-18T14:13:31.5970291Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-18T14:13:31.5971589Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-18T14:13:31.5972904Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-18T14:13:31.5974110Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-18T14:13:31.5975433Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-18T14:13:31.5976739Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-18T14:13:31.5978042Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-18T14:13:31.5979393Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-18T14:13:31.5980770Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-18T14:13:31.5982197Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-18T14:13:31.5983655Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-18T14:13:31.5985169Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-18T14:13:31.5986789Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-18T14:13:31.5988519Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-18T14:13:31.5990212Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-18T14:13:31.5991781Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-18T14:13:31.5993291Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-18T14:13:31.5994827Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-18T14:13:31.6076828Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-18T14:13:31.6078604Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcommon-sense-perl amd64 3.74-2build6 [20.1 kB] 2021-05-18T14:13:31.6080115Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-18T14:13:31.6081582Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-18T14:13:31.6083029Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-18T14:13:31.6084475Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-18T14:13:31.6085909Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-18T14:13:31.6087497Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-18T14:13:31.6088980Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-18T14:13:31.6090586Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-18T14:13:31.6092167Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-18T14:13:31.6093715Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-18T14:13:31.6095193Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-18T14:13:31.6096590Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-18T14:13:31.6097945Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-18T14:13:31.6099452Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-18T14:13:31.6100921Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-18T14:13:31.6102384Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-18T14:13:31.6103843Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-18T14:13:31.6105286Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-18T14:13:31.6106724Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-18T14:13:31.6108162Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-18T14:13:31.6109591Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-18T14:13:31.6110970Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-18T14:13:31.6112331Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-18T14:13:31.6113766Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-18T14:13:31.6115405Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-18T14:13:31.6117119Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-18T14:13:31.6118563Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-18T14:13:31.6120090Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-18T14:13:31.6121622Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-18T14:13:31.6122988Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-perl all 4.02000-2 [80.9 kB] 2021-05-18T14:13:31.6124327Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-18T14:13:31.6125864Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-18T14:13:31.6127441Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-18T14:13:31.6128938Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-18T14:13:31.6130370Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-18T14:13:31.6131940Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-18T14:13:31.6133399Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-18T14:13:31.6134785Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-18T14:13:31.6136227Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-18T14:13:31.6137744Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-18T14:13:31.6139219Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-18T14:13:31.6140610Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-18T14:13:31.6142016Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-18T14:13:31.6143598Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-18T14:13:31.6145192Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtypes-serialiser-perl all 1.0-1 [12.1 kB] 2021-05-18T14:13:31.6146680Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-xs-perl amd64 4.020-1build1 [83.7 kB] 2021-05-18T14:13:31.6148105Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-18T14:13:31.6149568Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-18T14:13:31.6151089Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-18T14:13:31.6152598Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-18T14:13:31.6154143Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-18T14:13:31.6155647Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-18T14:13:31.6211369Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-18T14:13:31.6212868Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-18T14:13:31.6214323Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-18T14:13:31.6215805Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-18T14:13:31.6218110Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-18T14:13:31.6219704Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-18T14:13:31.6221362Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-18T14:13:31.6222911Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-18T14:13:31.6224405Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-18T14:13:31.6225876Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-18T14:13:31.6227284Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-18T14:13:31.6228700Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-18T14:13:31.6230133Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-18T14:13:31.6231711Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-18T14:13:31.6233133Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-18T14:13:31.6234745Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-18T14:13:31.6236459Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-18T14:13:31.6238029Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-18T14:13:31.6239637Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-18T14:13:31.6241102Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-18T14:13:31.6242487Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-18T14:13:31.6244097Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-18T14:13:31.6245637Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-18T14:13:31.6247153Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-18T14:13:31.6248702Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-18T14:13:31.6250160Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-18T14:13:31.6251598Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-18T14:13:31.6253111Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-18T14:13:31.6254617Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-18T14:13:31.6256086Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-18T14:13:31.6257549Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-18T14:13:31.6259024Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-18T14:13:31.6260428Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-18T14:13:31.6261840Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-18T14:13:31.6263184Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-18T14:13:31.6264233Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-18T14:13:31.6265531Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-18T14:13:31.6266869Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-18T14:13:31.6268182Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-18T14:13:31.6269500Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-18T14:13:32.2415740Z Fetched 8648 kB in 0s (20.3 MB/s) 2021-05-18T14:13:32.3687275Z Selecting previously unselected package dctrl-tools. 2021-05-18T14:13:32.4228737Z (Reading database ... 2021-05-18T14:13:32.4229498Z (Reading database ... 5% 2021-05-18T14:13:32.4230038Z (Reading database ... 10% 2021-05-18T14:13:32.4231838Z (Reading database ... 15% 2021-05-18T14:13:32.4232521Z (Reading database ... 20% 2021-05-18T14:13:32.4232930Z (Reading database ... 25% 2021-05-18T14:13:32.4233340Z (Reading database ... 30% 2021-05-18T14:13:32.4233745Z (Reading database ... 35% 2021-05-18T14:13:32.4234150Z (Reading database ... 40% 2021-05-18T14:13:32.4234538Z (Reading database ... 45% 2021-05-18T14:13:32.4234940Z (Reading database ... 50% 2021-05-18T14:13:33.0562922Z (Reading database ... 55% 2021-05-18T14:13:34.0279972Z (Reading database ... 60% 2021-05-18T14:13:34.6196337Z (Reading database ... 65% 2021-05-18T14:13:35.4698046Z (Reading database ... 70% 2021-05-18T14:13:36.5628573Z (Reading database ... 75% 2021-05-18T14:13:37.7579658Z (Reading database ... 80% 2021-05-18T14:13:39.0116481Z (Reading database ... 85% 2021-05-18T14:13:40.2185632Z (Reading database ... 90% 2021-05-18T14:13:41.4094786Z (Reading database ... 95% 2021-05-18T14:13:41.4105008Z (Reading database ... 100% 2021-05-18T14:13:41.4105981Z (Reading database ... 254809 files and directories currently installed.) 2021-05-18T14:13:41.4203111Z Preparing to unpack .../000-dctrl-tools_2.24-3_amd64.deb ... 2021-05-18T14:13:41.4627192Z Unpacking dctrl-tools (2.24-3) ... 2021-05-18T14:13:41.4990324Z Selecting previously unselected package libfile-which-perl. 2021-05-18T14:13:41.5230406Z Preparing to unpack .../001-libfile-which-perl_1.23-1_all.deb ... 2021-05-18T14:13:41.5235583Z Unpacking libfile-which-perl (1.23-1) ... 2021-05-18T14:13:41.5486414Z Selecting previously unselected package libfile-homedir-perl. 2021-05-18T14:13:41.5723564Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb ... 2021-05-18T14:13:41.5731545Z Unpacking libfile-homedir-perl (1.004-1) ... 2021-05-18T14:13:41.6112251Z Selecting previously unselected package libio-pty-perl. 2021-05-18T14:13:41.6350202Z Preparing to unpack .../003-libio-pty-perl_1%3a1.12-1_amd64.deb ... 2021-05-18T14:13:41.6360282Z Unpacking libio-pty-perl (1:1.12-1) ... 2021-05-18T14:13:41.6678184Z Selecting previously unselected package libipc-run-perl. 2021-05-18T14:13:41.6882545Z Preparing to unpack .../004-libipc-run-perl_20180523.0-2_all.deb ... 2021-05-18T14:13:41.6891225Z Unpacking libipc-run-perl (20180523.0-2) ... 2021-05-18T14:13:41.7198796Z Selecting previously unselected package libclass-method-modifiers-perl. 2021-05-18T14:13:41.7395300Z Preparing to unpack .../005-libclass-method-modifiers-perl_2.13-1_all.deb ... 2021-05-18T14:13:41.7403461Z Unpacking libclass-method-modifiers-perl (2.13-1) ... 2021-05-18T14:13:41.7590532Z Selecting previously unselected package libb-hooks-op-check-perl. 2021-05-18T14:13:41.7824256Z Preparing to unpack .../006-libb-hooks-op-check-perl_0.22-1build2_amd64.deb ... 2021-05-18T14:13:41.7832710Z Unpacking libb-hooks-op-check-perl (0.22-1build2) ... 2021-05-18T14:13:41.8026539Z Selecting previously unselected package libdynaloader-functions-perl. 2021-05-18T14:13:41.8261163Z Preparing to unpack .../007-libdynaloader-functions-perl_0.003-1_all.deb ... 2021-05-18T14:13:41.8273654Z Unpacking libdynaloader-functions-perl (0.003-1) ... 2021-05-18T14:13:41.8459185Z Selecting previously unselected package libdevel-callchecker-perl. 2021-05-18T14:13:41.8700153Z Preparing to unpack .../008-libdevel-callchecker-perl_0.008-1ubuntu1_amd64.deb ... 2021-05-18T14:13:41.8705974Z Unpacking libdevel-callchecker-perl (0.008-1ubuntu1) ... 2021-05-18T14:13:41.8910763Z Selecting previously unselected package libparams-classify-perl. 2021-05-18T14:13:41.9148155Z Preparing to unpack .../009-libparams-classify-perl_0.015-1build2_amd64.deb ... 2021-05-18T14:13:41.9156740Z Unpacking libparams-classify-perl (0.015-1build2) ... 2021-05-18T14:13:41.9408828Z Selecting previously unselected package libmodule-runtime-perl. 2021-05-18T14:13:41.9644736Z Preparing to unpack .../010-libmodule-runtime-perl_0.016-1_all.deb ... 2021-05-18T14:13:41.9653004Z Unpacking libmodule-runtime-perl (0.016-1) ... 2021-05-18T14:13:41.9831623Z Selecting previously unselected package libimport-into-perl. 2021-05-18T14:13:42.0065616Z Preparing to unpack .../011-libimport-into-perl_1.002005-1_all.deb ... 2021-05-18T14:13:42.0075167Z Unpacking libimport-into-perl (1.002005-1) ... 2021-05-18T14:13:42.0256973Z Selecting previously unselected package librole-tiny-perl. 2021-05-18T14:13:42.0493388Z Preparing to unpack .../012-librole-tiny-perl_2.001004-1_all.deb ... 2021-05-18T14:13:42.0506810Z Unpacking librole-tiny-perl (2.001004-1) ... 2021-05-18T14:13:42.0705739Z Selecting previously unselected package libstrictures-perl. 2021-05-18T14:13:42.0944321Z Preparing to unpack .../013-libstrictures-perl_2.000006-1_all.deb ... 2021-05-18T14:13:42.0957265Z Unpacking libstrictures-perl (2.000006-1) ... 2021-05-18T14:13:42.1180129Z Selecting previously unselected package libsub-quote-perl. 2021-05-18T14:13:42.1392509Z Preparing to unpack .../014-libsub-quote-perl_2.006006-1_all.deb ... 2021-05-18T14:13:42.1400152Z Unpacking libsub-quote-perl (2.006006-1) ... 2021-05-18T14:13:42.1589820Z Selecting previously unselected package libmoo-perl. 2021-05-18T14:13:42.1824059Z Preparing to unpack .../015-libmoo-perl_2.003006-1_all.deb ... 2021-05-18T14:13:42.1833531Z Unpacking libmoo-perl (2.003006-1) ... 2021-05-18T14:13:42.2043665Z Selecting previously unselected package patchutils. 2021-05-18T14:13:42.2276993Z Preparing to unpack .../016-patchutils_0.3.4-2_amd64.deb ... 2021-05-18T14:13:42.2283264Z Unpacking patchutils (0.3.4-2) ... 2021-05-18T14:13:42.2556962Z Selecting previously unselected package wdiff. 2021-05-18T14:13:42.2763668Z Preparing to 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Done 2021-05-18T14:14:15.4351437Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/R /usr/local/bin/R 2021-05-18T14:14:15.4451736Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/Rscript /usr/local/bin/Rscript 2021-05-18T14:14:15.4737362Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-05-18T14:14:15.4737814Z env: 2021-05-18T14:14:15.4738246Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:14:15.4738723Z TIC_DEPLOY_KEY: 2021-05-18T14:14:15.4739523Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:14:15.4741039Z GITHUB_PAT: *** 2021-05-18T14:14:15.4741755Z COVERALLS_TOKEN: *** 2021-05-18T14:14:15.4742188Z continue-on-error: true 2021-05-18T14:14:15.4742631Z VDIFFR_RUN_TESTS: 2021-05-18T14:14:15.4743084Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:14:15.4743479Z TZ: UTC 2021-05-18T14:14:15.4743856Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:14:15.4744222Z NOT_CRAN: true 2021-05-18T14:14:15.4744590Z ##[endgroup] 2021-05-18T14:14:15.5174120Z [command]sudo apt-get install -y texinfo 2021-05-18T14:14:15.6654209Z Reading package lists... 2021-05-18T14:14:15.7940278Z Building dependency tree... 2021-05-18T14:14:15.7955228Z Reading state information... 2021-05-18T14:14:15.9761049Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-18T14:14:15.9773053Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:16.1561289Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-18T14:14:16.2023074Z --2021-05-18 14:14:16-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-18T14:14:16.2141517Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-18T14:14:16.2194709Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-18T14:14:16.2481353Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-18T14:14:16.2483335Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-18T14:14:16.2485448Z --2021-05-18 14:14:16-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-18T14:14:16.2713352Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-18T14:14:16.3333364Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-18T14:14:16.5611698Z HTTP request sent, awaiting response... 302 Found 2021-05-18T14:14:16.5614941Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=OopNB%2FZ4Aou5fDydZyeWvRsc%2BXqVOe60BaGfzXbI1gw%3D&st=2021-05-18T14%3A13%3A16Z&se=2021-05-18T14%3A19%3A16Z&sp=r [following] 2021-05-18T14:14:16.5618871Z --2021-05-18 14:14:16-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=OopNB%2FZ4Aou5fDydZyeWvRsc%2BXqVOe60BaGfzXbI1gw%3D&st=2021-05-18T14%3A13%3A16Z&se=2021-05-18T14%3A19%3A16Z&sp=r 2021-05-18T14:14:17.0935811Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-18T14:14:17.0942716Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-18T14:14:17.0944234Z HTTP request sent, awaiting response... 200 OK 2021-05-18T14:14:17.0945566Z Length: 67306919 (64M) [application/octet-stream] 2021-05-18T14:14:17.0947302Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-18T14:14:17.4558190Z 2021-05-18T14:14:19.0198154Z 0K ........ ........ ........ ........ 49% 15.5M 2s 2021-05-18T14:14:20.2179608Z 32768K ........ ........ ........ ........ 99% 26.1M 0s 2021-05-18T14:14:20.2180585Z 65536K 100% 3.13M=3.3s 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2021-05-18T14:14:24.4923547Z COVERALLS_TOKEN: *** 2021-05-18T14:14:24.4924012Z continue-on-error: true 2021-05-18T14:14:24.4924448Z VDIFFR_RUN_TESTS: 2021-05-18T14:14:24.4924902Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:14:24.4925310Z TZ: UTC 2021-05-18T14:14:24.4925677Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:14:24.4926114Z NOT_CRAN: true 2021-05-18T14:14:24.4926477Z ##[endgroup] 2021-05-18T14:14:27.8678434Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-18T14:14:28.0664448Z [1/1, ??:??/??:??] update: texlive.infra [226k] (59199 -> 59237) ... done 2021-05-18T14:14:28.0665633Z running mktexlsr ... 2021-05-18T14:14:28.1368867Z done running mktexlsr. 2021-05-18T14:14:28.1588347Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-18T14:14:28.1589876Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-18T14:14:29.3049061Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-18T14:14:29.3052165Z [1/89, ??:??/??:??] install: addliga [1k] 2021-05-18T14:14:29.3912939Z [2/89, 00:00/00:00] install: ae [57k] 2021-05-18T14:14:29.4395680Z [3/89, 00:00/00:00] install: auto-pst-pdf-lua [3k] 2021-05-18T14:14:29.4791510Z [4/89, 00:00/00:00] install: barracuda [30k] 2021-05-18T14:14:29.5213676Z [5/89, 00:00/00:00] install: bezierplot [8k] 2021-05-18T14:14:29.9465041Z [6/89, 00:00/00:00] install: biber.x86_64-linux [22986k] 2021-05-18T14:14:31.2126168Z [7/89, 00:02/00:02] install: biber [1k] 2021-05-18T14:14:31.2757187Z [8/89, 00:02/00:02] install: biblatex [238k] 2021-05-18T14:14:31.3440023Z [9/89, 00:02/00:02] install: checkcites.x86_64-linux [1k] 2021-05-18T14:14:31.3837037Z [10/89, 00:02/00:02] install: checkcites [7k] 2021-05-18T14:14:31.4228859Z [11/89, 00:02/00:02] install: chickenize [15k] 2021-05-18T14:14:31.4628932Z [12/89, 00:02/00:02] install: chinese-jfm [3k] 2021-05-18T14:14:31.5025014Z [13/89, 00:02/00:02] install: cloze [9k] 2021-05-18T14:14:31.5432438Z [14/89, 00:02/00:02] install: colorprofiles [86k] 2021-05-18T14:14:31.5896515Z [15/89, 00:02/00:02] install: combofont [2k] 2021-05-18T14:14:31.6555592Z [16/89, 00:02/00:02] install: courier [470k] 2021-05-18T14:14:31.7379160Z [17/89, 00:02/00:02] install: courier-scaled [3k] 2021-05-18T14:14:31.7775732Z [18/89, 00:02/00:02] install: cstypo [3k] 2021-05-18T14:14:31.8168533Z [19/89, 00:02/00:02] install: ctablestack [2k] 2021-05-18T14:14:31.8565354Z [20/89, 00:02/00:02] install: ekdosis [19k] 2021-05-18T14:14:31.8992406Z [21/89, 00:02/00:02] install: emoji [40k] 2021-05-18T14:14:31.9429796Z [22/89, 00:02/00:02] install: emojicite [2k] 2021-05-18T14:14:31.9823240Z [23/89, 00:02/00:02] install: enctex [24k] 2021-05-18T14:14:32.0255858Z [24/89, 00:02/00:02] install: enigma [18k] 2021-05-18T14:14:32.0672556Z [25/89, 00:03/00:03] install: etex-pkg [6k] 2021-05-18T14:14:32.1084156Z [26/89, 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lua-visual-debug [4k] 2021-05-18T14:14:32.6940554Z [40/89, 00:03/00:03] install: luacode [3k] 2021-05-18T14:14:32.7359025Z [41/89, 00:03/00:03] install: luacolor [5k] 2021-05-18T14:14:32.7769811Z [42/89, 00:03/00:03] install: luahyphenrules [3k] 2021-05-18T14:14:32.8176388Z [43/89, 00:03/00:03] install: luaimageembed [2k] 2021-05-18T14:14:32.8583824Z [44/89, 00:03/00:03] install: luaindex [5k] 2021-05-18T14:14:32.9004280Z [45/89, 00:03/00:03] install: luainputenc [5k] 2021-05-18T14:14:32.9414752Z [46/89, 00:03/00:03] install: luaintro [1k] 2021-05-18T14:14:32.9818041Z [47/89, 00:03/00:03] install: luakeys [5k] 2021-05-18T14:14:33.0227121Z [48/89, 00:03/00:03] install: lualatex-doc [1k] 2021-05-18T14:14:33.0635883Z [49/89, 00:04/00:04] install: lualatex-truncate [2k] 2021-05-18T14:14:33.1041634Z [50/89, 00:04/00:04] install: luamplib [12k] 2021-05-18T14:14:33.1454728Z [51/89, 00:04/00:04] install: luapackageloader [2k] 2021-05-18T14:14:33.1855359Z [52/89, 00:04/00:04] install: luaprogtable [7k] 2021-05-18T14:14:33.2266577Z [53/89, 00:04/00:04] install: luarandom [2k] 2021-05-18T14:14:33.2684975Z [54/89, 00:04/00:04] install: luatex85 [2k] 2021-05-18T14:14:33.3095151Z [55/89, 00:04/00:04] install: luatexbase [4k] 2021-05-18T14:14:33.3505792Z [56/89, 00:04/00:04] install: luatexko [22k] 2021-05-18T14:14:33.3934065Z [57/89, 00:04/00:04] install: luatextra [2k] 2021-05-18T14:14:33.4335474Z [58/89, 00:04/00:04] install: luavlna [8k] 2021-05-18T14:14:33.4750800Z [59/89, 00:04/00:04] install: luaxml [31k] 2021-05-18T14:14:33.5196655Z [60/89, 00:04/00:04] install: makeindex.x86_64-linux [49k] 2021-05-18T14:14:33.5658197Z [61/89, 00:04/00:04] install: makeindex [5k] 2021-05-18T14:14:33.6065018Z [62/89, 00:04/00:04] install: mflogo [2k] 2021-05-18T14:14:33.6470096Z [63/89, 00:04/00:04] install: newpax [9k] 2021-05-18T14:14:33.6887156Z [64/89, 00:04/00:04] install: nodetree [13k] 2021-05-18T14:14:33.7306891Z [65/89, 00:04/00:04] install: odsfile [5k] 2021-05-18T14:14:33.7722236Z [66/89, 00:04/00:04] install: optex.x86_64-linux [1k] 2021-05-18T14:14:33.8403088Z [67/89, 00:04/00:04] install: optex [770k] 2021-05-18T14:14:33.9174085Z [68/89, 00:04/00:04] install: pdfarticle [4k] 2021-05-18T14:14:33.9613282Z [69/89, 00:04/00:04] install: pdfextra [22k] 2021-05-18T14:14:34.0052441Z [70/89, 00:04/00:04] install: placeat [4k] 2021-05-18T14:14:34.0483235Z [71/89, 00:05/00:05] install: plantuml [3k] 2021-05-18T14:14:34.0914263Z [72/89, 00:05/00:05] install: rsfs [55k] 2021-05-18T14:14:34.1389340Z [73/89, 00:05/00:05] install: selnolig [53k] 2021-05-18T14:14:34.1858070Z [74/89, 00:05/00:05] install: spelling [14k] 2021-05-18T14:14:34.2277517Z [75/89, 00:05/00:05] install: stricttex [2k] 2021-05-18T14:14:34.2684611Z [76/89, 00:05/00:05] install: texlive-common [1k] 2021-05-18T14:14:34.3106184Z [77/89, 00:05/00:05] install: texlive-en [1k] 2021-05-18T14:14:34.3529141Z [78/89, 00:05/00:05] install: texlive-msg-translations [144k] 2021-05-18T14:14:34.4098326Z [79/89, 00:05/00:05] install: thumbpdf.x86_64-linux [1k] 2021-05-18T14:14:34.4511551Z [80/89, 00:05/00:05] install: thumbpdf [19k] 2021-05-18T14:14:34.4942256Z [81/89, 00:05/00:05] install: tlshell.x86_64-linux [1k] 2021-05-18T14:14:34.5362967Z [82/89, 00:05/00:05] install: tlshell [29k] 2021-05-18T14:14:34.5854312Z [83/89, 00:05/00:05] install: typewriter [25k] 2021-05-18T14:14:34.6311634Z [84/89, 00:05/00:05] install: uninormalize [6k] 2021-05-18T14:14:34.6738089Z [85/89, 00:05/00:05] install: upquote [2k] 2021-05-18T14:14:34.7224701Z [86/89, 00:05/00:05] install: xdvi.x86_64-linux [530k] 2021-05-18T14:14:34.8096166Z [87/89, 00:05/00:05] install: xdvi [7k] 2021-05-18T14:14:34.8528053Z [88/89, 00:05/00:05] install: collection-basic [1k] 2021-05-18T14:14:34.8950006Z [89/89, 00:05/00:05] install: collection-luatex [1k] 2021-05-18T14:14:34.9116506Z running mktexlsr ... 2021-05-18T14:14:34.9824037Z done running mktexlsr. 2021-05-18T14:14:35.0088573Z running updmap-sys ... 2021-05-18T14:14:35.2482268Z done running updmap-sys. 2021-05-18T14:14:35.2483243Z regenerating fmtutil.cnf in /home/runner/.TinyTeX/texmf-dist 2021-05-18T14:14:35.2484862Z running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/iiSoqqEu_P/KNifjVuYJu ... 2021-05-18T14:14:35.6423392Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/iiSoqqEu_P/KNifjVuYJu. 2021-05-18T14:14:35.6424979Z OK: optex.fmt/luatex 2021-05-18T14:14:35.6426139Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-18T14:14:35.6427534Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-18T14:14:36.8008703Z /home/runner/.TinyTeX/bin/x86_64-linux/tlmgr: (make_container __BACKUP_texlive-scripts.r59219.tar) install-tl does not exist 2021-05-18T14:14:36.8010591Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-18T14:14:36.9515516Z [1/1, ??:??/??:??] update: texlive-scripts [106k] (59219 -> 59236) ... done 2021-05-18T14:14:36.9516307Z running mktexlsr ... 2021-05-18T14:14:37.0226928Z done running mktexlsr. 2021-05-18T14:14:37.0485833Z running updmap-sys ... 2021-05-18T14:14:37.2859084Z done running updmap-sys. 2021-05-18T14:14:37.2860284Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-18T14:14:37.2861597Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-18T14:14:37.3492043Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-18T14:14:37.3492514Z with: 2021-05-18T14:14:37.3492895Z pandoc-version: 2.7.3 2021-05-18T14:14:37.3493275Z env: 2021-05-18T14:14:37.3493671Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:14:37.3494118Z TIC_DEPLOY_KEY: 2021-05-18T14:14:37.3494859Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:14:37.3496532Z GITHUB_PAT: *** 2021-05-18T14:14:37.3497298Z COVERALLS_TOKEN: *** 2021-05-18T14:14:37.3497743Z continue-on-error: true 2021-05-18T14:14:37.3498188Z VDIFFR_RUN_TESTS: 2021-05-18T14:14:37.3498644Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:14:37.3499057Z TZ: UTC 2021-05-18T14:14:37.3499422Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:14:37.3499804Z NOT_CRAN: true 2021-05-18T14:14:37.3500159Z ##[endgroup] 2021-05-18T14:14:37.6414605Z [command]sudo apt-get install -y gdebi-core 2021-05-18T14:14:37.7043474Z Reading package lists... 2021-05-18T14:14:37.8462989Z Building dependency tree... 2021-05-18T14:14:37.8476970Z Reading state information... 2021-05-18T14:14:38.0488156Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-18T14:14:38.0496300Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:38.0509747Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-05-18T14:14:38.1592714Z 2021-05-18T14:14:38.1744266Z Reading package lists... 0% 2021-05-18T14:14:38.1744892Z 2021-05-18T14:14:38.1792928Z Reading package lists... 100% 2021-05-18T14:14:38.1794067Z 2021-05-18T14:14:38.1794292Z 2021-05-18T14:14:38.1794735Z Reading package lists... Done 2021-05-18T14:14:38.1795046Z 2021-05-18T14:14:38.1795477Z Building dependency tree... 0% 2021-05-18T14:14:38.1795796Z 2021-05-18T14:14:38.2049689Z Building dependency tree... 0% 2021-05-18T14:14:38.2050081Z 2021-05-18T14:14:38.2050582Z Building dependency tree... 50% 2021-05-18T14:14:38.2050947Z 2021-05-18T14:14:38.3106094Z Building dependency tree... 50% 2021-05-18T14:14:38.3106511Z 2021-05-18T14:14:38.3107026Z Building dependency tree 2021-05-18T14:14:38.3107374Z 2021-05-18T14:14:38.3107903Z Reading state information... 0% 2021-05-18T14:14:38.3108276Z 2021-05-18T14:14:38.4499862Z Reading state information... 0% 2021-05-18T14:14:38.4500295Z 2021-05-18T14:14:38.4500521Z 2021-05-18T14:14:38.4501061Z Reading state information... 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2021-05-18T14:14:38.6094011Z 2021-05-18T14:14:38.6094542Z Reading state information... 87% 2021-05-18T14:14:38.6128117Z 2021-05-18T14:14:38.6128625Z Reading state information... 89% 2021-05-18T14:14:38.6160099Z 2021-05-18T14:14:38.6160617Z Reading state information... 91% 2021-05-18T14:14:38.6194855Z 2021-05-18T14:14:38.6195346Z Reading state information... 93% 2021-05-18T14:14:38.6229080Z 2021-05-18T14:14:38.6229591Z Reading state information... 95% 2021-05-18T14:14:38.6265646Z 2021-05-18T14:14:38.6266156Z Reading state information... 97% 2021-05-18T14:14:38.6300280Z 2021-05-18T14:14:38.6300815Z Reading state information... 99% 2021-05-18T14:14:38.8752431Z Selecting previously unselected package pandoc. 2021-05-18T14:14:38.9795590Z (Reading database ... 261973 files and directories currently installed.) 2021-05-18T14:14:38.9887214Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-18T14:14:38.9896028Z Unpacking pandoc (2.7.3-1) ... 2021-05-18T14:14:40.9323713Z Setting up pandoc (2.7.3-1) ... 2021-05-18T14:14:40.9361988Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:14:41.6247848Z 2021-05-18T14:14:41.6248602Z 2021-05-18T14:14:41.6249229Z Reading state information... Done 2021-05-18T14:14:41.6626868Z ##[group]Run git config user.name adigherman 2021-05-18T14:14:41.6627504Z git config user.name adigherman 2021-05-18T14:14:41.6628061Z git config user.email adig@jhu.edu 2021-05-18T14:14:41.6668422Z shell: /usr/bin/bash -e {0} 2021-05-18T14:14:41.6668821Z env: 2021-05-18T14:14:41.6669257Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:14:41.6669728Z TIC_DEPLOY_KEY: 2021-05-18T14:14:41.6670498Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:14:41.6672030Z GITHUB_PAT: *** 2021-05-18T14:14:41.6672902Z COVERALLS_TOKEN: *** 2021-05-18T14:14:41.6673390Z continue-on-error: true 2021-05-18T14:14:41.6673845Z VDIFFR_RUN_TESTS: 2021-05-18T14:14:41.6674322Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:14:41.6674748Z TZ: UTC 2021-05-18T14:14:41.6675144Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:14:41.6675554Z NOT_CRAN: true 2021-05-18T14:14:41.6676110Z ##[endgroup] 2021-05-18T14:14:41.6932295Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-18T14:14:41.6932875Z env: 2021-05-18T14:14:41.6933309Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:14:41.6933756Z TIC_DEPLOY_KEY: 2021-05-18T14:14:41.6934501Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:14:41.6936105Z GITHUB_PAT: *** 2021-05-18T14:14:41.6936867Z COVERALLS_TOKEN: *** 2021-05-18T14:14:41.6937318Z continue-on-error: true 2021-05-18T14:14:41.6937772Z VDIFFR_RUN_TESTS: 2021-05-18T14:14:41.6938231Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:14:41.6938644Z TZ: UTC 2021-05-18T14:14:41.6939011Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:14:41.6939394Z NOT_CRAN: true 2021-05-18T14:14:41.6939753Z ##[endgroup] 2021-05-18T14:14:41.8611438Z Reading package lists... 2021-05-18T14:14:41.9879497Z Building dependency tree... 2021-05-18T14:14:41.9894019Z Reading state information... 2021-05-18T14:14:42.1108499Z The following additional packages will be installed: 2021-05-18T14:14:42.1111669Z cmake-data libjsoncpp1 librhash0 2021-05-18T14:14:42.1117286Z Suggested packages: 2021-05-18T14:14:42.1118053Z cmake-doc ninja-build 2021-05-18T14:14:42.1502639Z The following NEW packages will be installed: 2021-05-18T14:14:42.1510323Z cmake cmake-data libjsoncpp1 librhash0 2021-05-18T14:14:42.1710139Z 0 upgraded, 4 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:42.1710825Z Need to get 5470 kB of archives. 2021-05-18T14:14:42.1711519Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-18T14:14:42.1713122Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-18T14:14:42.1982189Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-18T14:14:42.2004185Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-18T14:14:42.2018477Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-18T14:14:42.6956635Z Fetched 5470 kB in 0s (31.4 MB/s) 2021-05-18T14:14:42.7346707Z Selecting previously unselected package cmake-data. 2021-05-18T14:14:42.7347807Z (Reading database ... 2021-05-18T14:14:42.7348722Z (Reading database ... 5% 2021-05-18T14:14:42.7349214Z (Reading database ... 10% 2021-05-18T14:14:42.7349690Z (Reading database ... 15% 2021-05-18T14:14:42.7350209Z (Reading database ... 20% 2021-05-18T14:14:42.7350656Z (Reading database ... 25% 2021-05-18T14:14:42.7351122Z (Reading database ... 30% 2021-05-18T14:14:42.7351568Z (Reading database ... 35% 2021-05-18T14:14:42.7352022Z (Reading database ... 40% 2021-05-18T14:14:42.7352481Z (Reading database ... 45% 2021-05-18T14:14:42.7352924Z (Reading database ... 50% 2021-05-18T14:14:42.7387524Z (Reading database ... 55% 2021-05-18T14:14:42.7422807Z (Reading database ... 60% 2021-05-18T14:14:42.7459449Z (Reading database ... 65% 2021-05-18T14:14:42.7573582Z (Reading database ... 70% 2021-05-18T14:14:42.7667604Z (Reading database ... 75% 2021-05-18T14:14:42.7926838Z (Reading database ... 80% 2021-05-18T14:14:42.8195205Z (Reading database ... 85% 2021-05-18T14:14:42.8318114Z (Reading database ... 90% 2021-05-18T14:14:42.8384243Z (Reading database ... 95% 2021-05-18T14:14:42.8384804Z (Reading database ... 100% 2021-05-18T14:14:42.8385614Z (Reading database ... 261980 files and directories currently installed.) 2021-05-18T14:14:42.8477683Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ... 2021-05-18T14:14:42.8674970Z Unpacking cmake-data (3.16.3-1ubuntu1) ... 2021-05-18T14:14:43.3637884Z Selecting previously unselected package libjsoncpp1:amd64. 2021-05-18T14:14:43.3851033Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... 2021-05-18T14:14:43.3869024Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-18T14:14:43.4130544Z Selecting previously unselected package librhash0:amd64. 2021-05-18T14:14:43.4385999Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-18T14:14:43.4394060Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-18T14:14:43.4757424Z Selecting previously unselected package cmake. 2021-05-18T14:14:43.4949570Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-18T14:14:43.4964679Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-18T14:14:43.8848356Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-18T14:14:43.8874036Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-18T14:14:43.9220993Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-18T14:14:43.9246004Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-18T14:14:43.9276322Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:14:45.1406307Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:14:47.0706936Z Reading package lists... 2021-05-18T14:14:47.2084532Z Building dependency tree... 2021-05-18T14:14:47.2103766Z Reading state information... 2021-05-18T14:14:47.3496702Z Suggested packages: 2021-05-18T14:14:47.3498333Z libssh-doc 2021-05-18T14:14:47.3889755Z The following NEW packages will be installed: 2021-05-18T14:14:47.3893347Z libssh-dev 2021-05-18T14:14:47.4074300Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:47.4075205Z Need to get 219 kB of archives. 2021-05-18T14:14:47.4076213Z After this operation, 1127 kB of additional disk space will be used. 2021-05-18T14:14:47.4077963Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-18T14:14:47.7708856Z Fetched 219 kB in 0s (11.7 MB/s) 2021-05-18T14:14:47.7998493Z Selecting previously unselected package libssh-dev:amd64. 2021-05-18T14:14:47.8054939Z (Reading database ... 2021-05-18T14:14:47.8055938Z (Reading database ... 5% 2021-05-18T14:14:47.8056436Z (Reading database ... 10% 2021-05-18T14:14:47.8056991Z (Reading database ... 15% 2021-05-18T14:14:47.8057456Z (Reading database ... 20% 2021-05-18T14:14:47.8057902Z (Reading database ... 25% 2021-05-18T14:14:47.8058373Z (Reading database ... 30% 2021-05-18T14:14:47.8058834Z (Reading database ... 35% 2021-05-18T14:14:47.8059281Z (Reading database ... 40% 2021-05-18T14:14:47.8059737Z (Reading database ... 45% 2021-05-18T14:14:47.8060180Z (Reading database ... 50% 2021-05-18T14:14:47.8097968Z (Reading database ... 55% 2021-05-18T14:14:47.8130998Z (Reading database ... 60% 2021-05-18T14:14:47.8167702Z (Reading database ... 65% 2021-05-18T14:14:47.8277990Z (Reading database ... 70% 2021-05-18T14:14:47.8377071Z (Reading database ... 75% 2021-05-18T14:14:47.8620257Z (Reading database ... 80% 2021-05-18T14:14:47.8883222Z (Reading database ... 85% 2021-05-18T14:14:47.9007592Z (Reading database ... 90% 2021-05-18T14:14:47.9073424Z (Reading database ... 95% 2021-05-18T14:14:47.9074254Z (Reading database ... 100% 2021-05-18T14:14:47.9075239Z (Reading database ... 264764 files and directories currently installed.) 2021-05-18T14:14:47.9172990Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-18T14:14:47.9183004Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-18T14:14:47.9888578Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-18T14:14:49.9099630Z Reading package lists... 2021-05-18T14:14:50.0485938Z Building dependency tree... 2021-05-18T14:14:50.0502330Z Reading state information... 2021-05-18T14:14:50.2229817Z The following NEW packages will be installed: 2021-05-18T14:14:50.2233810Z jags 2021-05-18T14:14:50.2836071Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:50.2836882Z Need to get 1562 kB of archives. 2021-05-18T14:14:50.2837686Z After this operation, 3615 kB of additional disk space will be used. 2021-05-18T14:14:50.2839563Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-18T14:14:50.6962323Z Fetched 1562 kB in 0s (14.1 MB/s) 2021-05-18T14:14:50.7277868Z Selecting previously unselected package jags. 2021-05-18T14:14:50.7299446Z (Reading database ... 2021-05-18T14:14:50.7300106Z (Reading database ... 5% 2021-05-18T14:14:50.7300623Z (Reading database ... 10% 2021-05-18T14:14:50.7301089Z (Reading database ... 15% 2021-05-18T14:14:50.7301534Z (Reading database ... 20% 2021-05-18T14:14:50.7301992Z (Reading database ... 25% 2021-05-18T14:14:50.7302438Z (Reading database ... 30% 2021-05-18T14:14:50.7302895Z (Reading database ... 35% 2021-05-18T14:14:50.7303350Z (Reading database ... 40% 2021-05-18T14:14:50.7303792Z (Reading database ... 45% 2021-05-18T14:14:50.7304245Z (Reading database ... 50% 2021-05-18T14:14:50.7336465Z (Reading database ... 55% 2021-05-18T14:14:50.7368648Z (Reading database ... 60% 2021-05-18T14:14:50.7402969Z (Reading database ... 65% 2021-05-18T14:14:50.7513243Z (Reading database ... 70% 2021-05-18T14:14:50.7612533Z (Reading database ... 75% 2021-05-18T14:14:50.7853839Z (Reading database ... 80% 2021-05-18T14:14:50.8131449Z (Reading database ... 85% 2021-05-18T14:14:50.8260540Z (Reading database ... 90% 2021-05-18T14:14:50.8331029Z (Reading database ... 95% 2021-05-18T14:14:50.8331665Z (Reading database ... 100% 2021-05-18T14:14:50.8332490Z (Reading database ... 264783 files and directories currently installed.) 2021-05-18T14:14:50.8429442Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-18T14:14:51.5638176Z Unpacking jags (4.3.0-3build1) ... 2021-05-18T14:14:51.7082898Z Setting up jags (4.3.0-3build1) ... 2021-05-18T14:14:51.7472040Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:14:52.4023206Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:14:54.3108817Z Reading package lists... 2021-05-18T14:14:54.4466021Z Building dependency tree... 2021-05-18T14:14:55.1046506Z Reading state information... 2021-05-18T14:14:55.1047263Z The following additional packages will be installed: 2021-05-18T14:14:55.1048336Z libnode64 libuv1-dev 2021-05-18T14:14:55.1048948Z The following NEW packages will be installed: 2021-05-18T14:14:55.1049745Z libnode-dev libnode64 libuv1-dev 2021-05-18T14:14:55.1050459Z 0 upgraded, 3 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:55.1051089Z Need to get 6239 kB of archives. 2021-05-18T14:14:55.1051769Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-18T14:14:55.1053158Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-18T14:14:55.1055072Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-18T14:14:55.1056741Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-18T14:14:55.1057644Z Fetched 6239 kB in 0s (75.9 MB/s) 2021-05-18T14:14:55.1058466Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-18T14:14:55.1059092Z (Reading database ... 2021-05-18T14:14:55.1059542Z (Reading database ... 5% 2021-05-18T14:14:55.1060184Z (Reading database ... 10% 2021-05-18T14:14:55.1060639Z (Reading database ... 15% 2021-05-18T14:14:55.1061102Z (Reading database ... 20% 2021-05-18T14:14:55.1061565Z (Reading database ... 25% 2021-05-18T14:14:55.1062012Z (Reading database ... 30% 2021-05-18T14:14:55.1062469Z (Reading database ... 35% 2021-05-18T14:14:55.1062917Z (Reading database ... 40% 2021-05-18T14:14:55.1063377Z (Reading database ... 45% 2021-05-18T14:14:55.1063833Z (Reading database ... 50% 2021-05-18T14:14:55.1081601Z (Reading database ... 55% 2021-05-18T14:14:55.1114658Z (Reading database ... 60% 2021-05-18T14:14:55.1149655Z (Reading database ... 65% 2021-05-18T14:14:55.1259715Z (Reading database ... 70% 2021-05-18T14:14:55.1357953Z (Reading database ... 75% 2021-05-18T14:14:55.1596727Z (Reading database ... 80% 2021-05-18T14:14:55.1865219Z (Reading database ... 85% 2021-05-18T14:14:55.1986104Z (Reading database ... 90% 2021-05-18T14:14:55.2052500Z (Reading database ... 95% 2021-05-18T14:14:55.2053217Z (Reading database ... 100% 2021-05-18T14:14:55.2054062Z (Reading database ... 264923 files and directories currently installed.) 2021-05-18T14:14:55.2146700Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-18T14:14:55.2156990Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-18T14:14:55.2477526Z Selecting previously unselected package libnode64:amd64. 2021-05-18T14:14:55.2703190Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-18T14:14:55.2721013Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-18T14:14:55.8878702Z Selecting previously unselected package libnode-dev:amd64. 2021-05-18T14:14:55.9059593Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-18T14:14:55.9069335Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-18T14:14:55.9900129Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-18T14:14:55.9952392Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-18T14:14:55.9969800Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-18T14:14:55.9993256Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:14:57.9096784Z Reading package lists... 2021-05-18T14:14:58.0394742Z Building dependency tree... 2021-05-18T14:14:58.0410710Z Reading state information... 2021-05-18T14:14:58.1737096Z The following additional packages will be installed: 2021-05-18T14:14:58.1740261Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-18T14:14:58.1744965Z Suggested packages: 2021-05-18T14:14:58.1745686Z libfftw3-doc 2021-05-18T14:14:58.2125602Z The following NEW packages will be installed: 2021-05-18T14:14:58.2132453Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-18T14:14:58.2308690Z 0 upgraded, 5 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:58.2309647Z Need to get 3986 kB of archives. 2021-05-18T14:14:58.2310462Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-18T14:14:58.2312552Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-18T14:14:58.2376571Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-18T14:14:58.2479382Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-18T14:14:58.2686651Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-18T14:14:58.2694858Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-18T14:14:58.6683465Z Fetched 3986 kB in 0s (45.5 MB/s) 2021-05-18T14:14:58.6961204Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-18T14:14:58.7027971Z (Reading database ... 2021-05-18T14:14:58.7028615Z (Reading database ... 5% 2021-05-18T14:14:58.7029172Z (Reading database ... 10% 2021-05-18T14:14:58.7029884Z (Reading database ... 15% 2021-05-18T14:14:58.7030436Z (Reading database ... 20% 2021-05-18T14:14:58.7030982Z (Reading database ... 25% 2021-05-18T14:14:58.7031526Z (Reading database ... 30% 2021-05-18T14:14:58.7032103Z (Reading database ... 35% 2021-05-18T14:14:58.7032641Z (Reading database ... 40% 2021-05-18T14:14:58.7033166Z (Reading database ... 45% 2021-05-18T14:14:58.7033705Z (Reading database ... 50% 2021-05-18T14:14:58.7067225Z (Reading database ... 55% 2021-05-18T14:14:58.7101557Z (Reading database ... 60% 2021-05-18T14:14:58.7137758Z (Reading database ... 65% 2021-05-18T14:14:58.7253343Z (Reading database ... 70% 2021-05-18T14:14:58.7354661Z (Reading database ... 75% 2021-05-18T14:14:58.7593057Z (Reading database ... 80% 2021-05-18T14:14:58.7862907Z (Reading database ... 85% 2021-05-18T14:14:58.7987850Z (Reading database ... 90% 2021-05-18T14:14:58.8055090Z (Reading database ... 95% 2021-05-18T14:14:58.8055679Z (Reading database ... 100% 2021-05-18T14:14:58.8056461Z (Reading database ... 265059 files and directories currently installed.) 2021-05-18T14:14:58.8151511Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:14:58.8167757Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:14:58.8658370Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-18T14:14:58.8905257Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:14:58.8922202Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:14:58.9797605Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-18T14:14:58.9979419Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:14:58.9988998Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:14:59.0838095Z Selecting previously unselected package libfftw3-bin. 2021-05-18T14:14:59.1054600Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:14:59.1065081Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-18T14:14:59.1358189Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-18T14:14:59.1549538Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:14:59.1558310Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:14:59.4155839Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:14:59.4183336Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:14:59.4202311Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:14:59.4224797Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-18T14:14:59.4245084Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:14:59.4268844Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:15:00.1369582Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:02.0713213Z Reading package lists... 2021-05-18T14:15:02.2066781Z Building dependency tree... 2021-05-18T14:15:02.2084050Z Reading state information... 2021-05-18T14:15:02.3421759Z The following additional packages will be installed: 2021-05-18T14:15:02.3425726Z libdcmtk14 2021-05-18T14:15:02.3823112Z The following NEW packages will be installed: 2021-05-18T14:15:02.3828409Z dcmtk libdcmtk14 2021-05-18T14:15:02.4024611Z 0 upgraded, 2 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:02.4025310Z Need to get 5546 kB of archives. 2021-05-18T14:15:02.4025987Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-18T14:15:02.4027705Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-18T14:15:02.4446153Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-18T14:15:02.8110131Z Fetched 5546 kB in 0s (86.5 MB/s) 2021-05-18T14:15:02.8369049Z Selecting previously unselected package libdcmtk14. 2021-05-18T14:15:02.8438432Z (Reading database ... 2021-05-18T14:15:02.8438930Z (Reading database ... 5% 2021-05-18T14:15:02.8439393Z (Reading database ... 10% 2021-05-18T14:15:02.8440041Z (Reading database ... 15% 2021-05-18T14:15:02.8440493Z (Reading database ... 20% 2021-05-18T14:15:02.8440958Z (Reading database ... 25% 2021-05-18T14:15:02.8441403Z (Reading database ... 30% 2021-05-18T14:15:02.8441857Z (Reading database ... 35% 2021-05-18T14:15:02.8442313Z (Reading database ... 40% 2021-05-18T14:15:02.8442760Z (Reading database ... 45% 2021-05-18T14:15:02.8443215Z (Reading database ... 50% 2021-05-18T14:15:02.8462668Z (Reading database ... 55% 2021-05-18T14:15:02.8494691Z (Reading database ... 60% 2021-05-18T14:15:02.8528098Z (Reading database ... 65% 2021-05-18T14:15:02.8635719Z (Reading database ... 70% 2021-05-18T14:15:02.8733980Z (Reading database ... 75% 2021-05-18T14:15:02.8967704Z (Reading database ... 80% 2021-05-18T14:15:02.9232729Z (Reading database ... 85% 2021-05-18T14:15:02.9356620Z (Reading database ... 90% 2021-05-18T14:15:02.9421643Z (Reading database ... 95% 2021-05-18T14:15:02.9422464Z (Reading database ... 100% 2021-05-18T14:15:02.9423464Z (Reading database ... 265150 files and directories currently installed.) 2021-05-18T14:15:02.9520621Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-18T14:15:02.9537399Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-18T14:15:03.4157883Z Selecting previously unselected package dcmtk. 2021-05-18T14:15:03.4359411Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-18T14:15:03.4414667Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-18T14:15:03.5696858Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-18T14:15:03.5723093Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-18T14:15:03.5823593Z Adding `dcmtk' group to system ... 2021-05-18T14:15:03.6507969Z Adding `dcmtk' user to system ... 2021-05-18T14:15:04.0427252Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-18T14:15:04.2766351Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:15:05.7334039Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:07.6751299Z Reading package lists... 2021-05-18T14:15:07.8066233Z Building dependency tree... 2021-05-18T14:15:07.8081618Z Reading state information... 2021-05-18T14:15:08.0110345Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-18T14:15:08.0111641Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:08.0727550Z Reading package lists... 2021-05-18T14:15:08.2025682Z Building dependency tree... 2021-05-18T14:15:08.2041560Z Reading state information... 2021-05-18T14:15:08.4142305Z libpng-dev is already the newest version (1.6.37-2). 2021-05-18T14:15:08.4143591Z libpng-dev set to manually installed. 2021-05-18T14:15:08.4144534Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:08.4728274Z Reading package lists... 2021-05-18T14:15:08.6052187Z Building dependency tree... 2021-05-18T14:15:08.6067204Z Reading state information... 2021-05-18T14:15:08.7432744Z The following additional packages will be installed: 2021-05-18T14:15:08.7435369Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-18T14:15:08.7440497Z Suggested packages: 2021-05-18T14:15:08.7441951Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-18T14:15:08.7443600Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-18T14:15:08.7444882Z fonts-arphic-uming fonts-nanum 2021-05-18T14:15:08.7836190Z The following NEW packages will be installed: 2021-05-18T14:15:08.7838107Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-18T14:15:08.7839341Z libpoppler97 poppler-data 2021-05-18T14:15:08.8052115Z 0 upgraded, 6 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:08.8052951Z Need to get 2582 kB of archives. 2021-05-18T14:15:08.8053661Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-18T14:15:08.8055407Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-18T14:15:08.8422710Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-18T14:15:08.8439671Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-18T14:15:08.8705269Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-18T14:15:08.8730664Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-18T14:15:08.8774455Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-18T14:15:09.2381649Z Fetched 2582 kB in 0s (28.8 MB/s) 2021-05-18T14:15:09.2718423Z Selecting previously unselected package poppler-data. 2021-05-18T14:15:09.2735163Z (Reading database ... 2021-05-18T14:15:09.2735773Z (Reading database ... 5% 2021-05-18T14:15:09.2736336Z (Reading database ... 10% 2021-05-18T14:15:09.2736900Z (Reading database ... 15% 2021-05-18T14:15:09.2737449Z (Reading database ... 20% 2021-05-18T14:15:09.2738156Z (Reading database ... 25% 2021-05-18T14:15:09.2738710Z (Reading database ... 30% 2021-05-18T14:15:09.2739252Z (Reading database ... 35% 2021-05-18T14:15:09.2739777Z (Reading database ... 40% 2021-05-18T14:15:09.2740323Z (Reading database ... 45% 2021-05-18T14:15:09.2740862Z (Reading database ... 50% 2021-05-18T14:15:09.2767309Z (Reading database ... 55% 2021-05-18T14:15:09.2800856Z (Reading database ... 60% 2021-05-18T14:15:09.2835044Z (Reading database ... 65% 2021-05-18T14:15:09.2947692Z (Reading database ... 70% 2021-05-18T14:15:09.3047994Z (Reading database ... 75% 2021-05-18T14:15:09.3286487Z (Reading database ... 80% 2021-05-18T14:15:09.3554087Z (Reading database ... 85% 2021-05-18T14:15:09.3687495Z (Reading database ... 90% 2021-05-18T14:15:09.3759303Z (Reading database ... 95% 2021-05-18T14:15:09.3759919Z (Reading database ... 100% 2021-05-18T14:15:09.3760747Z (Reading database ... 265385 files and directories currently installed.) 2021-05-18T14:15:09.3865980Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-18T14:15:09.3875183Z Unpacking poppler-data (0.4.9-2) ... 2021-05-18T14:15:09.6049511Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-18T14:15:09.6253796Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-18T14:15:09.6280219Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-18T14:15:09.6676947Z Selecting previously unselected package libpoppler97:amd64. 2021-05-18T14:15:09.6877813Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-18T14:15:09.6890150Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:15:09.7958440Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-18T14:15:09.8173664Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-18T14:15:09.8181385Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:15:09.8437367Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-18T14:15:09.8651365Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-18T14:15:09.8659748Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:15:09.8844891Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-18T14:15:09.9095701Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-18T14:15:09.9104132Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:15:09.9614332Z Setting up poppler-data (0.4.9-2) ... 2021-05-18T14:15:09.9696579Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-18T14:15:09.9717628Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:15:09.9739998Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:15:09.9758292Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:15:09.9778459Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:15:09.9809546Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-18T14:15:10.1742719Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:12.1006223Z Reading package lists... 2021-05-18T14:15:12.2331597Z Building dependency tree... 2021-05-18T14:15:12.2348048Z Reading state information... 2021-05-18T14:15:12.3680010Z The following additional packages will be installed: 2021-05-18T14:15:12.3682931Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-18T14:15:12.3688365Z Suggested packages: 2021-05-18T14:15:12.3689079Z libhdf5-doc 2021-05-18T14:15:12.4091343Z The following NEW packages will be installed: 2021-05-18T14:15:12.4093321Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-18T14:15:12.4094531Z libsz2 2021-05-18T14:15:12.4318674Z 0 upgraded, 7 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:12.4319368Z Need to get 4074 kB of archives. 2021-05-18T14:15:12.4320083Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-18T14:15:12.4321986Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-18T14:15:12.4376459Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-18T14:15:12.4588557Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-18T14:15:12.4640018Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-18T14:15:12.5319580Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-18T14:15:12.5462905Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-18T14:15:12.5530928Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-18T14:15:13.0076674Z Fetched 4074 kB in 0s (17.8 MB/s) 2021-05-18T14:15:13.0331312Z Selecting previously unselected package hdf5-helpers. 2021-05-18T14:15:13.0395556Z (Reading database ... 2021-05-18T14:15:13.0396574Z (Reading database ... 5% 2021-05-18T14:15:13.0397701Z (Reading database ... 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2021-05-18T14:15:13.1390195Z (Reading database ... 265945 files and directories currently installed.) 2021-05-18T14:15:13.1487523Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-18T14:15:13.1496831Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:15:13.1720906Z Selecting previously unselected package libaec0:amd64. 2021-05-18T14:15:13.1968789Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-18T14:15:13.1984331Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-18T14:15:13.2191383Z Selecting previously unselected package libsz2:amd64. 2021-05-18T14:15:13.2436694Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-18T14:15:13.2446796Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-18T14:15:13.2677827Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-18T14:15:13.2918655Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-18T14:15:13.2927918Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:15:13.4242492Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-18T14:15:13.4495574Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-18T14:15:13.4504266Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:15:13.4837242Z Selecting previously unselected package libaec-dev:amd64. 2021-05-18T14:15:13.5047440Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-18T14:15:13.5060774Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-18T14:15:13.5266005Z Selecting previously unselected package libhdf5-dev. 2021-05-18T14:15:13.5516384Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-18T14:15:13.5524488Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:15:13.8385785Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:15:13.8410459Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-18T14:15:13.8428608Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-18T14:15:13.8449551Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-18T14:15:13.8471936Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:15:13.8494942Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:15:13.8515426Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:15:13.8579780Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-18T14:15:13.8601734Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:15:14.5489001Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:16.4854817Z Reading package lists... 2021-05-18T14:15:16.6209775Z Building dependency tree... 2021-05-18T14:15:16.6226202Z Reading state information... 2021-05-18T14:15:16.7591536Z The following additional packages will be installed: 2021-05-18T14:15:16.7594092Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-18T14:15:16.8006295Z The following NEW packages will be installed: 2021-05-18T14:15:16.8011248Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-18T14:15:16.8014980Z mesa-common-dev 2021-05-18T14:15:16.8209876Z 0 upgraded, 6 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:16.8210537Z Need to get 1761 kB of archives. 2021-05-18T14:15:16.8211300Z After this operation, 5442 kB of additional disk space will be used. 2021-05-18T14:15:16.8212887Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-18T14:15:16.8267908Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-18T14:15:16.8272614Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-18T14:15:16.8294312Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-18T14:15:16.8321281Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-18T14:15:16.8355225Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-18T14:15:17.2153537Z Fetched 1761 kB in 0s (41.6 MB/s) 2021-05-18T14:15:17.2429579Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-18T14:15:17.2497941Z (Reading database ... 2021-05-18T14:15:17.2498468Z (Reading database ... 5% 2021-05-18T14:15:17.2498925Z (Reading database ... 10% 2021-05-18T14:15:17.2499385Z (Reading database ... 15% 2021-05-18T14:15:17.2500006Z (Reading database ... 20% 2021-05-18T14:15:17.2500464Z (Reading database ... 25% 2021-05-18T14:15:17.2500938Z (Reading database ... 30% 2021-05-18T14:15:17.2501385Z (Reading 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(2.4.102-1ubuntu1~20.04.1) ... 2021-05-18T14:15:17.3952705Z Selecting previously unselected package libglx-dev:amd64. 2021-05-18T14:15:17.4199562Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:15:17.4207664Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:15:17.4677477Z Selecting previously unselected package libgl-dev:amd64. 2021-05-18T14:15:17.4844923Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:15:17.4857815Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:15:17.5237994Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-18T14:15:17.5430534Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-18T14:15:17.5451522Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-18T14:15:17.5878514Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-18T14:15:17.6040904Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-18T14:15:17.6053919Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-18T14:15:17.6517647Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-18T14:15:17.6703342Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:15:17.6722841Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:15:17.8216942Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-18T14:15:17.8252776Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:15:17.8274286Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-18T14:15:17.8294476Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:15:17.8314494Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-18T14:15:17.8333409Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:15:17.8355334Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:15:19.1020906Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:21.0286663Z Reading package lists... 2021-05-18T14:15:21.1627881Z Building dependency tree... 2021-05-18T14:15:21.1644849Z Reading state information... 2021-05-18T14:15:21.2978588Z The following additional packages will be installed: 2021-05-18T14:15:21.2980672Z libprotobuf-lite17 libprotoc17 2021-05-18T14:15:21.3394918Z The following NEW packages will be installed: 2021-05-18T14:15:21.3397542Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-18T14:15:21.3398443Z protobuf-compiler 2021-05-18T14:15:21.3589026Z 0 upgraded, 5 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:21.3589945Z Need to get 2754 kB of archives. 2021-05-18T14:15:21.3591126Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-18T14:15:21.3592795Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-18T14:15:21.3637351Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-18T14:15:21.3733074Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-18T14:15:21.3860429Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-18T14:15:21.3932877Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-18T14:15:21.7534614Z Fetched 2754 kB in 0s (55.0 MB/s) 2021-05-18T14:15:21.7804372Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-18T14:15:21.7872463Z (Reading database ... 2021-05-18T14:15:21.7873272Z (Reading database ... 5% 2021-05-18T14:15:21.7873944Z (Reading database ... 10% 2021-05-18T14:15:21.7874581Z (Reading database ... 15% 2021-05-18T14:15:21.7875262Z (Reading 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2021-05-18T14:15:21.8996199Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:15:21.9012705Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:21.9397720Z Selecting previously unselected package libprotoc17:amd64. 2021-05-18T14:15:21.9586117Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:15:21.9595642Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:22.0438048Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-18T14:15:22.0630703Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:15:22.0640406Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:22.2078707Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-18T14:15:22.2309982Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:15:22.2320393Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:22.3424485Z Selecting previously unselected package protobuf-compiler. 2021-05-18T14:15:22.3630167Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:15:22.3641772Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:22.4171883Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:22.4204399Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:22.4230785Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:22.4258938Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:22.4281333Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:15:22.4306877Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:15:23.0828869Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:25.0114020Z Reading package lists... 2021-05-18T14:15:25.1498621Z Building dependency tree... 2021-05-18T14:15:25.1516681Z Reading state information... 2021-05-18T14:15:25.2890076Z The following additional packages will be installed: 2021-05-18T14:15:25.2893387Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-18T14:15:25.2898819Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-18T14:15:25.2899946Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-18T14:15:25.2901341Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-18T14:15:25.2902693Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-18T14:15:25.2903948Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-18T14:15:25.2905277Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-18T14:15:25.2906622Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-18T14:15:25.2907909Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-18T14:15:25.2909218Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-18T14:15:25.2910867Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-18T14:15:25.2912148Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-18T14:15:25.2913355Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-18T14:15:25.2914552Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-18T14:15:25.2915342Z Suggested packages: 2021-05-18T14:15:25.2916694Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-18T14:15:25.2918039Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-18T14:15:25.2919500Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-18T14:15:25.2920802Z nvidia-legacy-304xx-vdpau-driver 2021-05-18T14:15:25.3532086Z The following NEW packages will be installed: 2021-05-18T14:15:25.3535083Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-18T14:15:25.3536262Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-18T14:15:25.3538450Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-18T14:15:25.3539683Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-18T14:15:25.3543124Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-18T14:15:25.3546075Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-18T14:15:25.3548638Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-18T14:15:25.3551780Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-18T14:15:25.3552954Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-18T14:15:25.3555399Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-18T14:15:25.3557837Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-18T14:15:25.3560049Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-18T14:15:25.3563004Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-18T14:15:25.3566864Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-18T14:15:25.3780424Z 0 upgraded, 76 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:25.3781107Z Need to get 47.1 MB of archives. 2021-05-18T14:15:25.3781791Z After this operation, 195 MB of additional disk space will be used. 2021-05-18T14:15:25.3783312Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-18T14:15:25.3943190Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-18T14:15:25.3949434Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-18T14:15:25.3956814Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-18T14:15:25.3964033Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-18T14:15:25.3970335Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-18T14:15:25.3979291Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-18T14:15:25.4006259Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-18T14:15:25.6904909Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-18T14:15:25.6911869Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-18T14:15:25.6953119Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-18T14:15:25.7023571Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-18T14:15:25.7028611Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-18T14:15:25.7034135Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-18T14:15:25.7057012Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-18T14:15:25.7075112Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-18T14:15:25.7092932Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-18T14:15:25.7137135Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-18T14:15:25.7160913Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-18T14:15:25.7169467Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-18T14:15:25.7189964Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-18T14:15:25.7381850Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-18T14:15:25.7634486Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-18T14:15:25.7671100Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-18T14:15:25.7681295Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-18T14:15:25.7759889Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-18T14:15:25.8904911Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-18T14:15:25.8911725Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-18T14:15:25.8917736Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-18T14:15:25.8946523Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-18T14:15:25.8970238Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-18T14:15:25.8979602Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-18T14:15:25.9003666Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-18T14:15:25.9016867Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-18T14:15:25.9106881Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-18T14:15:25.9147305Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-18T14:15:25.9349647Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-18T14:15:25.9361482Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-18T14:15:26.1248523Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-18T14:15:26.1258052Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-18T14:15:26.1263841Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-18T14:15:26.1275488Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-18T14:15:26.1286329Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-18T14:15:26.1296067Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-18T14:15:26.1307575Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-18T14:15:26.1645437Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-18T14:15:26.1685982Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-18T14:15:26.1744312Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-18T14:15:26.1752207Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-18T14:15:26.1935244Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-18T14:15:27.1109813Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-18T14:15:27.1118767Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-18T14:15:27.1120758Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-18T14:15:27.1129840Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-18T14:15:27.1131749Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-18T14:15:27.1133378Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-18T14:15:27.1135034Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-18T14:15:27.1136577Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-18T14:15:27.1138100Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-18T14:15:27.1139564Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-18T14:15:27.1141027Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-18T14:15:27.1142490Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-18T14:15:27.1144070Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-18T14:15:27.1145684Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-18T14:15:27.1147594Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-18T14:15:27.1149360Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-18T14:15:27.1151125Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-18T14:15:27.1152723Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-18T14:15:27.1154373Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-18T14:15:27.1156262Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-18T14:15:27.1157778Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-18T14:15:27.1159606Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-18T14:15:27.1161482Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-18T14:15:27.1163179Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-18T14:15:27.1164724Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-18T14:15:27.1166281Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-18T14:15:27.1167166Z Fetched 47.1 MB in 1s (43.6 MB/s) 2021-05-18T14:15:27.1167806Z Selecting previously unselected package libaom0:amd64. 2021-05-18T14:15:27.1168402Z (Reading database ... 2021-05-18T14:15:27.1168859Z (Reading database ... 5% 2021-05-18T14:15:27.1169310Z (Reading database ... 10% 2021-05-18T14:15:27.1169770Z (Reading database ... 15% 2021-05-18T14:15:27.1170216Z (Reading database ... 20% 2021-05-18T14:15:27.1170671Z (Reading database ... 25% 2021-05-18T14:15:27.1171125Z (Reading database ... 30% 2021-05-18T14:15:27.1171562Z (Reading database ... 35% 2021-05-18T14:15:27.1172016Z (Reading database ... 40% 2021-05-18T14:15:27.1172469Z (Reading database ... 45% 2021-05-18T14:15:27.1172908Z (Reading database ... 50% 2021-05-18T14:15:27.1173360Z (Reading database ... 55% 2021-05-18T14:15:27.1173801Z (Reading database ... 60% 2021-05-18T14:15:27.1174256Z (Reading database ... 65% 2021-05-18T14:15:27.1174709Z (Reading database ... 70% 2021-05-18T14:15:27.1175145Z (Reading database ... 75% 2021-05-18T14:15:27.1175597Z (Reading database ... 80% 2021-05-18T14:15:27.1176036Z (Reading database ... 85% 2021-05-18T14:15:27.1176491Z (Reading database ... 90% 2021-05-18T14:15:27.1176943Z (Reading database ... 95% 2021-05-18T14:15:27.1177385Z (Reading database ... 100% 2021-05-18T14:15:27.1178087Z (Reading database ... 266807 files and directories currently installed.) 2021-05-18T14:15:27.1179110Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ... 2021-05-18T14:15:27.1180032Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-18T14:15:27.2357584Z Selecting previously unselected package libva2:amd64. 2021-05-18T14:15:27.2522443Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ... 2021-05-18T14:15:27.2537273Z Unpacking libva2:amd64 (2.7.0-2) ... 2021-05-18T14:15:27.2793877Z Selecting previously unselected package libva-drm2:amd64. 2021-05-18T14:15:27.3046356Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-18T14:15:27.3055763Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-18T14:15:27.3257379Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-18T14:15:27.3509379Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-18T14:15:27.3527429Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-18T14:15:27.3729344Z Selecting previously unselected package libvdpau1:amd64. 2021-05-18T14:15:27.3976683Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-18T14:15:27.3984936Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-18T14:15:27.4300325Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-18T14:15:27.4551082Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-18T14:15:27.4558983Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-18T14:15:27.4791899Z Selecting previously unselected package libavutil56:amd64. 2021-05-18T14:15:27.5042747Z Preparing to unpack .../06-libavutil56_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-18T14:15:27.5060181Z Unpacking libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:27.5517570Z Selecting previously unselected package libcodec2-0.9:amd64. 2021-05-18T14:15:27.5704368Z Preparing to unpack .../07-libcodec2-0.9_0.9.2-2_amd64.deb ... 2021-05-18T14:15:27.5715367Z Unpacking libcodec2-0.9:amd64 (0.9.2-2) ... 2021-05-18T14:15:28.2357252Z Selecting previously unselected package libgsm1:amd64. 2021-05-18T14:15:28.2557470Z Preparing to unpack .../08-libgsm1_1.0.18-2_amd64.deb ... 2021-05-18T14:15:28.2564600Z Unpacking libgsm1:amd64 (1.0.18-2) ... 2021-05-18T14:15:28.2804579Z Selecting previously unselected package libmp3lame0:amd64. 2021-05-18T14:15:28.3046278Z Preparing to unpack .../09-libmp3lame0_3.100-3_amd64.deb ... 2021-05-18T14:15:28.3061512Z Unpacking libmp3lame0:amd64 (3.100-3) ... 2021-05-18T14:15:28.3357568Z Selecting previously unselected package libopus0:amd64. 2021-05-18T14:15:28.3612429Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-18T14:15:28.3620903Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-18T14:15:28.4076880Z Selecting previously unselected package libshine3:amd64. 2021-05-18T14:15:28.4249911Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-18T14:15:28.4259092Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-18T14:15:28.4557178Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-18T14:15:28.4747857Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-18T14:15:28.4758483Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-18T14:15:28.5038482Z Selecting previously unselected package libspeex1:amd64. 2021-05-18T14:15:28.5230744Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 2021-05-18T14:15:28.5239170Z Unpacking libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1) ... 2021-05-18T14:15:28.5557574Z Selecting previously unselected package libsoxr0:amd64. 2021-05-18T14:15:28.5740580Z Preparing to unpack .../14-libsoxr0_0.1.3-2build1_amd64.deb ... 2021-05-18T14:15:28.5750503Z Unpacking libsoxr0:amd64 (0.1.3-2build1) ... 2021-05-18T14:15:28.6078192Z Selecting previously unselected package libswresample3:amd64. 2021-05-18T14:15:28.6264359Z Preparing to unpack .../15-libswresample3_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-18T14:15:28.6275620Z Unpacking libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:28.6597078Z Selecting previously unselected package libtheora0:amd64. 2021-05-18T14:15:28.6826030Z Preparing to unpack .../16-libtheora0_1.1.1+dfsg.1-15ubuntu2_amd64.deb ... 2021-05-18T14:15:28.6834179Z Unpacking libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-18T14:15:28.7237230Z Selecting previously unselected package libtwolame0:amd64. 2021-05-18T14:15:28.7431783Z Preparing to unpack .../17-libtwolame0_0.4.0-2_amd64.deb ... 2021-05-18T14:15:28.7441296Z Unpacking libtwolame0:amd64 (0.4.0-2) ... 2021-05-18T14:15:28.7757111Z Selecting previously unselected package libvorbisenc2:amd64. 2021-05-18T14:15:28.7939027Z Preparing to unpack .../18-libvorbisenc2_1.3.6-2ubuntu1_amd64.deb ... 2021-05-18T14:15:28.7948365Z Unpacking libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-18T14:15:28.8220357Z Selecting previously unselected package libwavpack1:amd64. 2021-05-18T14:15:28.8472376Z Preparing to unpack .../19-libwavpack1_5.2.0-1ubuntu0.1_amd64.deb ... 2021-05-18T14:15:28.8478824Z Unpacking libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-18T14:15:28.8797311Z Selecting previously unselected package libx264-155:amd64. 2021-05-18T14:15:28.8992095Z Preparing to unpack .../20-libx264-155_2%3a0.155.2917+git0a84d98-2_amd64.deb ... 2021-05-18T14:15:28.9000401Z Unpacking libx264-155:amd64 (2:0.155.2917+git0a84d98-2) ... 2021-05-18T14:15:28.9757508Z Selecting previously unselected package libx265-179:amd64. 2021-05-18T14:15:28.9942480Z Preparing to unpack .../21-libx265-179_3.2.1-1build1_amd64.deb ... 2021-05-18T14:15:28.9951936Z Unpacking libx265-179:amd64 (3.2.1-1build1) ... 2021-05-18T14:15:29.1837368Z Selecting previously unselected package libxvidcore4:amd64. 2021-05-18T14:15:29.2068077Z Preparing to unpack .../22-libxvidcore4_2%3a1.3.7-1_amd64.deb ... 2021-05-18T14:15:29.2076186Z Unpacking libxvidcore4:amd64 (2:1.3.7-1) ... 2021-05-18T14:15:29.2557530Z Selecting previously unselected package libzvbi-common. 2021-05-18T14:15:29.2725149Z Preparing to unpack .../23-libzvbi-common_0.2.35-17_all.deb ... 2021-05-18T14:15:29.2733013Z Unpacking libzvbi-common (0.2.35-17) ... 2021-05-18T14:15:29.2971505Z Selecting previously unselected package libzvbi0:amd64. 2021-05-18T14:15:29.3226803Z Preparing to unpack .../24-libzvbi0_0.2.35-17_amd64.deb ... 2021-05-18T14:15:29.3234958Z Unpacking libzvbi0:amd64 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Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-18T14:15:34.8263687Z Setting up libasyncns0:amd64 (0.8-6) ... 2021-05-18T14:15:34.8282689Z Setting up libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-18T14:15:34.8310621Z Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-18T14:15:34.8334650Z Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... 2021-05-18T14:15:34.8352906Z Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-18T14:15:34.8372212Z Setting up libopenal-data (1:1.19.1-1) ... 2021-05-18T14:15:34.8396648Z Setting up mesa-va-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:15:34.8418704Z Setting up libbluray2:amd64 (1:1.2.0-1) ... 2021-05-18T14:15:34.8444546Z Setting up libsamplerate0:amd64 (0.1.9-2) ... 2021-05-18T14:15:34.8565582Z Setting up libva-x11-2:amd64 (2.7.0-2) ... 2021-05-18T14:15:34.8586497Z Setting up libopenmpt0:amd64 (0.4.11-1build1) ... 2021-05-18T14:15:34.8609625Z Setting up libzvbi-common (0.2.35-17) ... 2021-05-18T14:15:34.8645289Z Setting up libmp3lame0:amd64 (3.100-3) ... 2021-05-18T14:15:34.8665410Z Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... 2021-05-18T14:15:34.8683038Z Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-18T14:15:34.8698405Z Setting up libiec61883-0:amd64 (1.2.0-3) ... 2021-05-18T14:15:34.8716823Z Setting up libserd-0-0:amd64 (0.30.2-1) ... 2021-05-18T14:15:34.8732836Z Setting up libavc1394-0:amd64 (0.5.4-5) ... 2021-05-18T14:15:34.8752773Z Setting up mesa-vdpau-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:15:34.8771881Z Setting up libzvbi0:amd64 (0.2.35-17) ... 2021-05-18T14:15:34.8787819Z Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... 2021-05-18T14:15:34.8809211Z Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... 2021-05-18T14:15:34.8834716Z Setting up libopenal1:amd64 (1:1.19.1-1) ... 2021-05-18T14:15:34.8855613Z Setting up libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.8878040Z Setting up va-driver-all:amd64 (2.7.0-2) ... 2021-05-18T14:15:34.8903407Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.8932317Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-05-18T14:15:34.8958957Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-05-18T14:15:34.8977820Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-05-18T14:15:34.9170092Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-05-18T14:15:34.9200053Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-18T14:15:34.9240382Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.9260623Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-05-18T14:15:34.9283400Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-18T14:15:34.9301798Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-05-18T14:15:34.9393871Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.9412540Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.9430874Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.9451120Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-18T14:15:34.9473138Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-18T14:15:34.9493442Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.9515090Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.9539241Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.9563355Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:15:34.9642908Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:15:35.9318795Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:37.8627738Z Reading package lists... 2021-05-18T14:15:37.9998163Z Building dependency tree... 2021-05-18T14:15:38.0016636Z Reading state information... 2021-05-18T14:15:38.1387943Z The following additional packages will be installed: 2021-05-18T14:15:38.1391269Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-18T14:15:38.1809153Z The following NEW packages will be installed: 2021-05-18T14:15:38.1811005Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-18T14:15:38.1813888Z libmagick++-dev 2021-05-18T14:15:38.1993365Z 0 upgraded, 4 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:38.1994985Z Need to get 309 kB of archives. 2021-05-18T14:15:38.1996382Z After this operation, 2202 kB of additional disk space will be used. 2021-05-18T14:15:38.1998497Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-18T14:15:38.2018513Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-18T14:15:38.2048614Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-18T14:15:38.2065485Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-18T14:15:38.5760680Z Fetched 309 kB in 0s (14.5 MB/s) 2021-05-18T14:15:38.6059573Z Selecting previously unselected package libmagick++-6-headers. 2021-05-18T14:15:38.6127362Z (Reading database ... 2021-05-18T14:15:38.6128151Z (Reading database ... 5% 2021-05-18T14:15:38.6128851Z (Reading database ... 10% 2021-05-18T14:15:38.6129495Z (Reading database ... 15% 2021-05-18T14:15:38.6130136Z (Reading database ... 20% 2021-05-18T14:15:38.6130756Z (Reading database ... 25% 2021-05-18T14:15:38.6131379Z (Reading database ... 30% 2021-05-18T14:15:38.6131993Z (Reading database ... 35% 2021-05-18T14:15:38.6132619Z (Reading database ... 40% 2021-05-18T14:15:38.6133244Z (Reading database ... 45% 2021-05-18T14:15:38.6133859Z (Reading database ... 50% 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Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-18T14:15:38.8261050Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:15:38.8584335Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-18T14:15:38.8834904Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-18T14:15:38.8843336Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:15:38.9438271Z Selecting previously unselected package libmagick++-dev. 2021-05-18T14:15:38.9644125Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-18T14:15:38.9711554Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:15:39.0210596Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:15:39.0281971Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:15:39.0311457Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:15:39.0334787Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:15:39.0401361Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:40.9694807Z Reading package lists... 2021-05-18T14:15:41.1003185Z Building dependency tree... 2021-05-18T14:15:41.1020441Z Reading state information... 2021-05-18T14:15:41.2329223Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-18T14:15:41.2331394Z The following additional packages will be installed: 2021-05-18T14:15:41.2333356Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-18T14:15:41.2334711Z libijs-0.35 libjbig2dec0 2021-05-18T14:15:41.2336640Z Suggested packages: 2021-05-18T14:15:41.2338089Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-18T14:15:41.2339210Z ghostscript-x 2021-05-18T14:15:41.2746882Z The following NEW packages will be installed: 2021-05-18T14:15:41.2751380Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-18T14:15:41.2757845Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-18T14:15:41.2955087Z 0 upgraded, 8 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:41.2956384Z Need to get 11.2 MB of archives. 2021-05-18T14:15:41.2957119Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-18T14:15:41.2958896Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-18T14:15:41.3386282Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-18T14:15:41.3459180Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-18T14:15:41.4602230Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-18T14:15:41.4871639Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-18T14:15:41.4876282Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-18T14:15:41.4909702Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-18T14:15:41.5269057Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-18T14:15:41.9062791Z Fetched 11.2 MB in 0s (45.2 MB/s) 2021-05-18T14:15:41.9357656Z Selecting previously unselected package fonts-droid-fallback. 2021-05-18T14:15:41.9427311Z (Reading database ... 2021-05-18T14:15:41.9427795Z (Reading database ... 5% 2021-05-18T14:15:41.9428451Z (Reading 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... 100% 2021-05-18T14:15:42.0475080Z (Reading database ... 267393 files and directories currently installed.) 2021-05-18T14:15:42.0583930Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-18T14:15:42.0800826Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-18T14:15:42.2758090Z Selecting previously unselected package fonts-noto-mono. 2021-05-18T14:15:42.2954927Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-18T14:15:42.2966813Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-18T14:15:42.3258479Z Selecting previously unselected package fonts-urw-base35. 2021-05-18T14:15:42.3512692Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-18T14:15:42.4077232Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-18T14:15:42.7758486Z Selecting previously unselected package libgs9-common. 2021-05-18T14:15:42.7987925Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-05-18T14:15:42.7993680Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:15:42.8917687Z Selecting previously unselected package libijs-0.35:amd64. 2021-05-18T14:15:42.9137252Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-05-18T14:15:42.9163251Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-05-18T14:15:42.9393451Z Selecting previously unselected package libjbig2dec0:amd64. 2021-05-18T14:15:42.9648339Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-05-18T14:15:42.9657367Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-18T14:15:42.9956792Z Selecting previously unselected package libgs9:amd64. 2021-05-18T14:15:43.0172689Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-18T14:15:43.0181968Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:15:43.2797108Z Selecting previously unselected package ghostscript. 2021-05-18T14:15:43.3023275Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-18T14:15:43.3033949Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:15:43.3624848Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-18T14:15:43.3654436Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-18T14:15:43.3676163Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-18T14:15:43.4244612Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-18T14:15:43.4268074Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-18T14:15:43.4488182Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:15:43.4510338Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:15:43.4531805Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:15:43.4632628Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-18T14:15:43.5990672Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:43.6170932Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:15:46.5024321Z Reading package lists... 2021-05-18T14:15:46.6357485Z Building dependency tree... 2021-05-18T14:15:46.6374678Z Reading state information... 2021-05-18T14:15:46.7686459Z The following additional packages will be installed: 2021-05-18T14:15:46.7688578Z libudunits2-0 libudunits2-data 2021-05-18T14:15:46.8087347Z The following NEW packages will be installed: 2021-05-18T14:15:46.8089464Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-18T14:15:46.8345768Z 0 upgraded, 3 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:46.8347639Z Need to get 429 kB of archives. 2021-05-18T14:15:46.8348543Z After this operation, 1026 kB of additional disk space will be used. 2021-05-18T14:15:46.8350175Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-18T14:15:46.8363118Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-18T14:15:46.8370279Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-18T14:15:47.2133885Z Fetched 429 kB in 0s (13.4 MB/s) 2021-05-18T14:15:47.2470942Z Selecting previously unselected package libudunits2-data. 2021-05-18T14:15:47.2472196Z (Reading database ... 2021-05-18T14:15:47.2472865Z (Reading database ... 5% 2021-05-18T14:15:47.2473508Z (Reading database ... 10% 2021-05-18T14:15:47.2474131Z (Reading database ... 15% 2021-05-18T14:15:47.2474769Z (Reading database ... 20% 2021-05-18T14:15:47.2475395Z (Reading database ... 25% 2021-05-18T14:15:47.2476580Z (Reading database ... 30% 2021-05-18T14:15:47.2477076Z (Reading database ... 35% 2021-05-18T14:15:47.2477529Z (Reading database ... 40% 2021-05-18T14:15:47.2478134Z (Reading database ... 45% 2021-05-18T14:15:47.2478592Z (Reading database ... 50% 2021-05-18T14:15:47.2502066Z (Reading database ... 55% 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(2.2.26-5) ... 2021-05-18T14:15:47.4357316Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-18T14:15:47.4534609Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-18T14:15:47.4544424Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-18T14:15:47.5202456Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-18T14:15:47.5226538Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-18T14:15:47.5246451Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-18T14:15:47.5269267Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-18T14:15:47.6247631Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:49.5507621Z Reading package lists... 2021-05-18T14:15:49.6838150Z Building dependency tree... 2021-05-18T14:15:49.6854888Z Reading state information... 2021-05-18T14:15:49.8567818Z The following NEW packages will be installed: 2021-05-18T14:15:49.8570889Z libjq-dev 2021-05-18T14:15:49.8743237Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:49.8744174Z Need to get 11.2 kB of archives. 2021-05-18T14:15:49.8745355Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-18T14:15:49.8747262Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-18T14:15:50.2449822Z Fetched 11.2 kB in 0s (815 kB/s) 2021-05-18T14:15:50.2720666Z Selecting previously unselected package libjq-dev:amd64. 2021-05-18T14:15:50.2790466Z (Reading database ... 2021-05-18T14:15:50.2791172Z (Reading database ... 5% 2021-05-18T14:15:50.2791800Z (Reading database ... 10% 2021-05-18T14:15:50.2792435Z (Reading database ... 15% 2021-05-18T14:15:50.2793097Z (Reading database ... 20% 2021-05-18T14:15:50.2793896Z (Reading database ... 25% 2021-05-18T14:15:50.2794523Z (Reading database ... 30% 2021-05-18T14:15:50.2795144Z (Reading database ... 35% 2021-05-18T14:15:50.2795785Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-18T14:15:52.3407021Z Reading package lists... 2021-05-18T14:15:52.4760240Z Building dependency tree... 2021-05-18T14:15:52.4778217Z Reading state information... 2021-05-18T14:15:52.6504328Z The following NEW packages will be installed: 2021-05-18T14:15:52.6507097Z libmng2 2021-05-18T14:15:52.7085691Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:52.7088810Z Need to get 168 kB of archives. 2021-05-18T14:15:52.7089647Z After this operation, 571 kB of additional disk space will be used. 2021-05-18T14:15:52.7091511Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-18T14:15:53.0858538Z Fetched 168 kB in 0s (2881 kB/s) 2021-05-18T14:15:53.1161476Z Selecting previously unselected package libmng2:amd64. 2021-05-18T14:15:53.1233692Z (Reading database ... 2021-05-18T14:15:53.1234225Z (Reading database ... 5% 2021-05-18T14:15:53.1234681Z (Reading database ... 10% 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2021-05-18T14:15:53.2291806Z (Reading database ... 267992 files and directories currently installed.) 2021-05-18T14:15:53.2391988Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-18T14:15:53.2408845Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-18T14:15:53.3075209Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-18T14:15:53.3100483Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:55.2643968Z Reading package lists... 2021-05-18T14:15:55.3983792Z Building dependency tree... 2021-05-18T14:15:55.4000785Z Reading state information... 2021-05-18T14:15:55.5851166Z E: Unable to locate package libmng1 2021-05-18T14:15:55.6446152Z Reading package lists... 2021-05-18T14:15:55.7868700Z Building dependency tree... 2021-05-18T14:15:55.7887237Z Reading state information... 2021-05-18T14:15:55.9028218Z E: Unable to locate package libapparmor-devel 2021-05-18T14:15:55.9623225Z Reading package lists... 2021-05-18T14:15:56.0937529Z Building dependency tree... 2021-05-18T14:15:56.0954670Z Reading state information... 2021-05-18T14:15:56.2277594Z The following additional packages will be installed: 2021-05-18T14:15:56.2279316Z libij-java 2021-05-18T14:15:56.2681332Z The following NEW packages will be installed: 2021-05-18T14:15:56.2685693Z imagej libij-java 2021-05-18T14:15:56.2851563Z 0 upgraded, 2 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:56.2852419Z Need to get 2328 kB of archives. 2021-05-18T14:15:56.2853218Z After this operation, 2498 kB of additional disk space will be used. 2021-05-18T14:15:56.2854864Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-18T14:15:56.3123407Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-18T14:15:56.6849431Z Fetched 2328 kB in 0s (57.9 MB/s) 2021-05-18T14:15:56.7118056Z Selecting previously unselected package libij-java. 2021-05-18T14:15:56.7183080Z (Reading 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lists... 2021-05-18T14:16:00.7675746Z Building dependency tree... 2021-05-18T14:16:00.7692962Z Reading state information... 2021-05-18T14:16:00.9066152Z Suggested packages: 2021-05-18T14:16:00.9067716Z bowtie2-examples 2021-05-18T14:16:00.9448515Z The following NEW packages will be installed: 2021-05-18T14:16:00.9453312Z bowtie2 2021-05-18T14:16:00.9618140Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:00.9619485Z Need to get 1324 kB of archives. 2021-05-18T14:16:00.9620511Z After this operation, 5630 kB of additional disk space will be used. 2021-05-18T14:16:00.9622721Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-18T14:16:01.3576017Z Fetched 1324 kB in 0s (39.5 MB/s) 2021-05-18T14:16:01.3850842Z Selecting previously unselected package bowtie2. 2021-05-18T14:16:01.3919755Z (Reading database ... 2021-05-18T14:16:01.3920525Z (Reading database ... 5% 2021-05-18T14:16:01.3921173Z (Reading database ... 10% 2021-05-18T14:16:01.3922000Z (Reading database ... 15% 2021-05-18T14:16:01.3922636Z (Reading database ... 20% 2021-05-18T14:16:01.3923304Z (Reading database ... 25% 2021-05-18T14:16:01.3923932Z (Reading database ... 30% 2021-05-18T14:16:01.3924559Z (Reading database ... 35% 2021-05-18T14:16:01.3925171Z (Reading database ... 40% 2021-05-18T14:16:01.3925801Z (Reading database ... 45% 2021-05-18T14:16:01.3926424Z (Reading database ... 50% 2021-05-18T14:16:01.3960106Z (Reading database ... 55% 2021-05-18T14:16:01.4002457Z (Reading database ... 60% 2021-05-18T14:16:01.4025286Z (Reading database ... 65% 2021-05-18T14:16:01.4133122Z (Reading database ... 70% 2021-05-18T14:16:01.4243431Z (Reading database ... 75% 2021-05-18T14:16:01.4264964Z (Reading database ... 80% 2021-05-18T14:16:01.4740056Z (Reading database ... 85% 2021-05-18T14:16:01.4888193Z (Reading database ... 90% 2021-05-18T14:16:01.4955238Z (Reading database ... 95% 2021-05-18T14:16:01.4957621Z (Reading database ... 100% 2021-05-18T14:16:01.4959794Z (Reading database ... 268021 files and directories currently installed.) 2021-05-18T14:16:01.5053691Z Preparing to unpack .../bowtie2_2.3.5.1-6build1_amd64.deb ... 2021-05-18T14:16:01.5069136Z Unpacking bowtie2 (2.3.5.1-6build1) ... 2021-05-18T14:16:01.6791630Z Setting up bowtie2 (2.3.5.1-6build1) ... 2021-05-18T14:16:01.6816229Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:16:04.3519160Z Reading package lists... 2021-05-18T14:16:04.4944365Z Building dependency tree... 2021-05-18T14:16:04.4961745Z Reading state information... 2021-05-18T14:16:04.6702702Z E: Unable to locate package install 2021-05-18T14:16:04.6703613Z E: Unable to locate package gdal 2021-05-18T14:16:04.7294703Z Reading package lists... 2021-05-18T14:16:04.8643940Z Building dependency tree... 2021-05-18T14:16:04.8661143Z Reading state information... 2021-05-18T14:16:04.8869040Z Package insighttoolkit4-python is not available, but is referred to by another package. 2021-05-18T14:16:04.8870619Z This may mean that the package is missing, has been obsoleted, or 2021-05-18T14:16:04.8871643Z is only available from another source 2021-05-18T14:16:04.8872215Z 2021-05-18T14:16:04.9761724Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-18T14:16:05.0349639Z Reading package lists... 2021-05-18T14:16:05.1670697Z Building dependency tree... 2021-05-18T14:16:05.1687866Z Reading state information... 2021-05-18T14:16:05.1890790Z Package libav-tools is not available, but is referred to by another package. 2021-05-18T14:16:05.1892864Z This may mean that the package is missing, has been obsoleted, or 2021-05-18T14:16:05.1894701Z is only available from another source 2021-05-18T14:16:05.1896468Z However the following packages replace it: 2021-05-18T14:16:05.1900043Z ffmpeg 2021-05-18T14:16:05.1900284Z 2021-05-18T14:16:05.2766506Z E: Package 'libav-tools' has no installation candidate 2021-05-18T14:16:05.3354142Z Reading package lists... 2021-05-18T14:16:05.4703443Z Building dependency tree... 2021-05-18T14:16:05.4721528Z Reading state information... 2021-05-18T14:16:05.6064795Z The following additional packages will be installed: 2021-05-18T14:16:05.6066953Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-18T14:16:05.6068856Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-18T14:16:05.6070134Z libssh2-1-dev 2021-05-18T14:16:05.6075410Z Suggested packages: 2021-05-18T14:16:05.6076953Z libgcrypt20-doc libmbedtls-doc 2021-05-18T14:16:05.6486264Z The following NEW packages will be installed: 2021-05-18T14:16:05.6488176Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-18T14:16:05.6489768Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-18T14:16:05.6492222Z libssh2-1-dev 2021-05-18T14:16:05.6683687Z 0 upgraded, 11 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:05.6684395Z Need to get 2667 kB of archives. 2021-05-18T14:16:05.6685080Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-18T14:16:05.6686971Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-18T14:16:05.6722079Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-18T14:16:05.6785536Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-18T14:16:05.6789480Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-18T14:16:05.6801367Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-18T14:16:05.6806199Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-18T14:16:05.6812312Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-18T14:16:05.6845992Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-18T14:16:05.6882772Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-18T14:16:05.6904084Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-18T14:16:05.6909251Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-18T14:16:06.0876416Z Fetched 2667 kB in 0s (63.6 MB/s) 2021-05-18T14:16:06.1156648Z Selecting previously unselected package libgpg-error-dev. 2021-05-18T14:16:06.1228129Z (Reading database ... 2021-05-18T14:16:06.1228815Z (Reading database ... 5% 2021-05-18T14:16:06.1229467Z (Reading database 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2021-05-18T14:16:06.2288156Z (Reading database ... 268047 files and directories currently installed.) 2021-05-18T14:16:06.2392232Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-18T14:16:06.2403330Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-18T14:16:06.2757753Z Selecting previously unselected package libgcrypt20-dev. 2021-05-18T14:16:06.2972853Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-18T14:16:06.2986754Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-18T14:16:06.3677615Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-18T14:16:06.3895305Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-18T14:16:06.3908775Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-18T14:16:06.4142189Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-18T14:16:06.4395808Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-18T14:16:06.4404019Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:16:06.4750502Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-18T14:16:06.5003030Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-18T14:16:06.5012038Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:16:06.5276598Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-18T14:16:06.5528155Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-18T14:16:06.5539258Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:16:06.5837420Z Selecting previously unselected package libgit2-28:amd64. 2021-05-18T14:16:06.6091173Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-18T14:16:06.6105529Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-18T14:16:06.6678830Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-18T14:16:06.6895922Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-18T14:16:06.6905500Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:16:06.7558112Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-18T14:16:06.7773222Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-18T14:16:06.7792311Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-18T14:16:06.8358175Z Selecting previously unselected package libhttp-parser-dev. 2021-05-18T14:16:06.8522956Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-18T14:16:06.8536567Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-18T14:16:06.8838006Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-18T14:16:06.9001748Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-18T14:16:06.9010295Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-18T14:16:07.0189256Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-18T14:16:07.0217484Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:16:07.0249959Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-18T14:16:07.0277737Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-18T14:16:07.0309179Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:16:07.0329753Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:16:07.0362331Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:16:07.0390379Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-18T14:16:07.0418408Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-18T14:16:07.0461453Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-18T14:16:07.0481617Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-18T14:16:07.0503849Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:16:11.4977120Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-18T14:16:11.5987469Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:16:13.5309475Z Reading package lists... 2021-05-18T14:16:13.6738604Z Building dependency tree... 2021-05-18T14:16:13.6756837Z Reading state information... 2021-05-18T14:16:13.8911594Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-18T14:16:13.8913253Z libtiff-dev set to manually installed. 2021-05-18T14:16:13.8921345Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:13.9499437Z Reading package lists... 2021-05-18T14:16:14.0935116Z Building dependency tree... 2021-05-18T14:16:14.0952335Z Reading state information... 2021-05-18T14:16:14.2955257Z unixodbc-dev is already the newest version (2.3.7). 2021-05-18T14:16:14.2956982Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:14.3542097Z Reading package lists... 2021-05-18T14:16:14.4986214Z Building dependency tree... 2021-05-18T14:16:14.5006277Z Reading state information... 2021-05-18T14:16:14.6798181Z The following NEW packages will be installed: 2021-05-18T14:16:14.6800179Z libsodium-dev 2021-05-18T14:16:14.6970438Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:14.6971146Z Need to get 169 kB of archives. 2021-05-18T14:16:14.6972382Z After this operation, 826 kB of additional disk space will be used. 2021-05-18T14:16:14.6974245Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-18T14:16:15.0728051Z Fetched 169 kB in 0s (9732 kB/s) 2021-05-18T14:16:15.1001820Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-18T14:16:15.1072158Z (Reading database ... 2021-05-18T14:16:15.1072870Z (Reading database ... 5% 2021-05-18T14:16:15.1073510Z (Reading database ... 10% 2021-05-18T14:16:15.1074185Z (Reading database ... 15% 2021-05-18T14:16:15.1074821Z (Reading database ... 20% 2021-05-18T14:16:15.1075441Z (Reading database ... 25% 2021-05-18T14:16:15.1076526Z (Reading database ... 30% 2021-05-18T14:16:15.1077003Z (Reading database ... 35% 2021-05-18T14:16:15.1077446Z (Reading database ... 40% 2021-05-18T14:16:15.1077901Z (Reading database ... 45% 2021-05-18T14:16:15.1078359Z (Reading database ... 50% 2021-05-18T14:16:15.1103287Z (Reading database ... 55% 2021-05-18T14:16:15.1145515Z (Reading database ... 60% 2021-05-18T14:16:15.1168434Z (Reading database ... 65% 2021-05-18T14:16:15.1276261Z (Reading database ... 70% 2021-05-18T14:16:15.1387818Z (Reading database ... 75% 2021-05-18T14:16:15.1408937Z (Reading database ... 80% 2021-05-18T14:16:15.1889658Z (Reading database ... 85% 2021-05-18T14:16:15.2042494Z (Reading database ... 90% 2021-05-18T14:16:15.2114850Z (Reading database ... 95% 2021-05-18T14:16:15.2115412Z (Reading database ... 100% 2021-05-18T14:16:15.2116481Z (Reading database ... 268550 files and directories currently installed.) 2021-05-18T14:16:15.2221409Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-18T14:16:15.2230452Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-18T14:16:15.2947789Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-18T14:16:17.2105456Z Reading package lists... 2021-05-18T14:16:17.3489042Z Building dependency tree... 2021-05-18T14:16:17.3507012Z Reading state information... 2021-05-18T14:16:17.4873972Z The following additional packages will be installed: 2021-05-18T14:16:17.4877377Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-18T14:16:17.5288540Z The following NEW packages will be installed: 2021-05-18T14:16:17.5292821Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-18T14:16:17.5294256Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-18T14:16:17.5482754Z 0 upgraded, 8 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:17.5483463Z Need to get 10.4 MB of archives. 2021-05-18T14:16:17.5484516Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-18T14:16:17.5486142Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-18T14:16:17.5627260Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-18T14:16:17.5932836Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-18T14:16:17.6172565Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-18T14:16:17.6343886Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-18T14:16:17.6614586Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-18T14:16:17.6879401Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-18T14:16:17.7357538Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-18T14:16:18.1155839Z Fetched 10.4 MB in 0s (50.6 MB/s) 2021-05-18T14:16:18.1428414Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-18T14:16:18.1498809Z (Reading database ... 2021-05-18T14:16:18.1499435Z (Reading database ... 5% 2021-05-18T14:16:18.1500018Z (Reading database ... 10% 2021-05-18T14:16:18.1500765Z (Reading database ... 15% 2021-05-18T14:16:18.1501322Z (Reading database ... 20% 2021-05-18T14:16:18.1501962Z (Reading database ... 25% 2021-05-18T14:16:18.1502537Z (Reading database ... 30% 2021-05-18T14:16:18.1503104Z (Reading database ... 35% 2021-05-18T14:16:18.1503654Z (Reading database ... 40% 2021-05-18T14:16:18.1504206Z (Reading database ... 45% 2021-05-18T14:16:18.1504772Z (Reading database ... 50% 2021-05-18T14:16:18.1527864Z (Reading database ... 55% 2021-05-18T14:16:18.1569617Z (Reading database ... 60% 2021-05-18T14:16:18.1591780Z (Reading database ... 65% 2021-05-18T14:16:18.1700311Z (Reading database ... 70% 2021-05-18T14:16:18.1804364Z (Reading database ... 75% 2021-05-18T14:16:18.1824501Z (Reading database ... 80% 2021-05-18T14:16:18.2288808Z (Reading database ... 85% 2021-05-18T14:16:18.2435673Z (Reading database ... 90% 2021-05-18T14:16:18.2503800Z (Reading database ... 95% 2021-05-18T14:16:18.2504380Z (Reading database ... 100% 2021-05-18T14:16:18.2505212Z (Reading database ... 268620 files and directories currently installed.) 2021-05-18T14:16:18.2603946Z Preparing to unpack .../0-libarchive-dev_3.4.0-2ubuntu1_amd64.deb ... 2021-05-18T14:16:18.2614723Z Unpacking libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-18T14:16:18.3277530Z Selecting previously unselected package liblept5:amd64. 2021-05-18T14:16:18.3524397Z Preparing to unpack .../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-18T14:16:18.3539155Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-18T14:16:18.4638707Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-18T14:16:18.4836545Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-18T14:16:18.4846646Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-18T14:16:18.6216920Z Selecting previously unselected package libtesseract4:amd64. 2021-05-18T14:16:18.6443257Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-18T14:16:18.6455420Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-18T14:16:18.7701303Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-18T14:16:18.7961499Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-18T14:16:18.7970453Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-18T14:16:18.9558231Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-18T14:16:18.9790286Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-18T14:16:18.9798438Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-18T14:16:19.1326904Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-18T14:16:19.1585777Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-18T14:16:19.1594822Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-18T14:16:19.4828604Z Selecting previously unselected package tesseract-ocr. 2021-05-18T14:16:19.5086254Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-18T14:16:19.5094236Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-18T14:16:19.5868370Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-18T14:16:19.5900246Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-18T14:16:19.5939231Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-18T14:16:19.5960741Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-18T14:16:19.5991381Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-18T14:16:19.6009963Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-18T14:16:19.6037945Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-18T14:16:19.6058999Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-18T14:16:19.6087254Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:16:22.2882595Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:16:24.2073128Z Reading package lists... 2021-05-18T14:16:24.3414219Z Building dependency tree... 2021-05-18T14:16:24.3432456Z Reading state information... 2021-05-18T14:16:24.5483906Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-18T14:16:24.5485045Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:24.6073254Z Reading package lists... 2021-05-18T14:16:24.7463809Z Building dependency tree... 2021-05-18T14:16:24.7481593Z Reading state information... 2021-05-18T14:16:24.8808536Z The following additional packages will be installed: 2021-05-18T14:16:24.8810776Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-18T14:16:24.8813516Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-18T14:16:24.8818281Z Suggested packages: 2021-05-18T14:16:24.8820461Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-18T14:16:24.9257119Z The following NEW packages will be installed: 2021-05-18T14:16:24.9259394Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-18T14:16:24.9261612Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-18T14:16:24.9472351Z 0 upgraded, 10 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:24.9473366Z Need to get 1459 kB of archives. 2021-05-18T14:16:24.9474152Z After this operation, 7754 kB of additional disk space will be used. 2021-05-18T14:16:24.9476234Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-18T14:16:24.9506303Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-18T14:16:24.9514294Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-18T14:16:24.9522494Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-18T14:16:24.9528782Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-18T14:16:24.9534282Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-18T14:16:24.9549460Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-18T14:16:24.9591914Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-18T14:16:24.9608995Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-18T14:16:24.9634728Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-18T14:16:25.3474311Z Fetched 1459 kB in 0s (42.3 MB/s) 2021-05-18T14:16:25.3767888Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-18T14:16:25.3840245Z (Reading database ... 2021-05-18T14:16:25.3841021Z (Reading database ... 5% 2021-05-18T14:16:25.3841899Z (Reading database ... 10% 2021-05-18T14:16:25.3842413Z (Reading database ... 15% 2021-05-18T14:16:25.3842892Z (Reading database ... 20% 2021-05-18T14:16:25.3843396Z (Reading database ... 25% 2021-05-18T14:16:25.3843867Z (Reading database ... 30% 2021-05-18T14:16:25.3844312Z (Reading database ... 35% 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2021-05-18T14:16:25.5317481Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-18T14:16:25.5526286Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:16:25.5537062Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:25.5865257Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-18T14:16:25.6048774Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:16:25.6057653Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:25.6309378Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-18T14:16:25.6565125Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:16:25.6573468Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:25.6877667Z Selecting previously unselected package comerr-dev:amd64. 2021-05-18T14:16:25.7101506Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-18T14:16:25.7130715Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-18T14:16:25.7437460Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-18T14:16:25.7643218Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:16:25.7651141Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:25.8277867Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-18T14:16:25.8531698Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-18T14:16:25.8540184Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-18T14:16:25.9237589Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-18T14:16:25.9444039Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-18T14:16:25.9453540Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-18T14:16:25.9877802Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-18T14:16:26.0105942Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:16:26.0114212Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:26.0477285Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-18T14:16:26.0669429Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-18T14:16:26.0678114Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-18T14:16:26.1641647Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-18T14:16:26.1684777Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:26.1711183Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-18T14:16:26.1734991Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-18T14:16:26.1764915Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:26.1788661Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:26.1814386Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:26.1841585Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:26.1869980Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:16:26.1888538Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-18T14:16:26.1911482Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:16:26.2100421Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:16:29.0982419Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-18T14:16:31.1162826Z Reading package lists... 2021-05-18T14:16:31.2517186Z Building dependency tree... 2021-05-18T14:16:31.2534523Z Reading state information... 2021-05-18T14:16:31.3693487Z E: Unable to locate package udunits 2021-05-18T14:16:31.4276917Z Reading package lists... 2021-05-18T14:16:31.5679075Z Building dependency tree... 2021-05-18T14:16:31.5696400Z Reading state information... 2021-05-18T14:16:31.7085401Z The following additional packages will be installed: 2021-05-18T14:16:31.7086832Z libwebpdemux2 2021-05-18T14:16:31.7487204Z The following NEW packages will be installed: 2021-05-18T14:16:31.7491796Z libwebp-dev libwebpdemux2 2021-05-18T14:16:31.7677078Z 0 upgraded, 2 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:31.7677904Z Need to get 277 kB of archives. 2021-05-18T14:16:31.7678675Z After this operation, 965 kB of additional disk space will be used. 2021-05-18T14:16:31.7680373Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-18T14:16:31.7696159Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-18T14:16:32.1498285Z Fetched 277 kB in 0s (12.7 MB/s) 2021-05-18T14:16:32.1797576Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-18T14:16:32.1858955Z (Reading database ... 2021-05-18T14:16:32.1859635Z (Reading database ... 5% 2021-05-18T14:16:32.1860233Z (Reading 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... 100% 2021-05-18T14:16:32.2892254Z (Reading database ... 269145 files and directories currently installed.) 2021-05-18T14:16:32.2990489Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-18T14:16:32.3005403Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-18T14:16:32.3237801Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-18T14:16:32.3462635Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-18T14:16:32.3472481Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-18T14:16:32.4216063Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-18T14:16:32.4247535Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-18T14:16:32.4271954Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:16:34.3753315Z Reading package lists... 2021-05-18T14:16:34.5173305Z Building dependency tree... 2021-05-18T14:16:34.5191281Z Reading state information... 2021-05-18T14:16:34.6555684Z The following additional packages will be installed: 2021-05-18T14:16:34.6560558Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-18T14:16:34.6562060Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-18T14:16:34.6563330Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-18T14:16:34.6564472Z Suggested packages: 2021-05-18T14:16:34.6565550Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-18T14:16:34.6566377Z Recommended packages: 2021-05-18T14:16:34.6566956Z cargo 2021-05-18T14:16:34.7020477Z The following NEW packages will be installed: 2021-05-18T14:16:34.7027173Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-18T14:16:34.7028487Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-18T14:16:34.7033685Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-18T14:16:34.7313862Z 0 upgraded, 13 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:34.7314540Z Need to get 108 MB of archives. 2021-05-18T14:16:34.7315226Z After this operation, 501 MB of additional disk space will be used. 2021-05-18T14:16:34.7317129Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-18T14:16:34.7479456Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-18T14:16:34.7550694Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-18T14:16:34.7588629Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-18T14:16:34.7710323Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-18T14:16:34.8284392Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-18T14:16:34.8291228Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-18T14:16:34.8822747Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-18T14:16:35.8705505Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-18T14:16:36.7957719Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-18T14:16:36.8288922Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-18T14:16:36.8907003Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-18T14:16:37.2266345Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-18T14:16:37.6050245Z Fetched 108 MB in 3s (42.8 MB/s) 2021-05-18T14:16:37.6359663Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-18T14:16:37.6434504Z (Reading database ... 2021-05-18T14:16:37.6435057Z (Reading database ... 5% 2021-05-18T14:16:37.6437278Z (Reading database ... 10% 2021-05-18T14:16:37.6437751Z (Reading database ... 15% 2021-05-18T14:16:37.6439516Z (Reading database ... 20% 2021-05-18T14:16:37.6439991Z (Reading database ... 25% 2021-05-18T14:16:37.6441693Z (Reading database ... 30% 2021-05-18T14:16:37.6442163Z (Reading database ... 35% 2021-05-18T14:16:37.6443854Z (Reading database ... 40% 2021-05-18T14:16:37.6444315Z (Reading database ... 45% 2021-05-18T14:16:37.6445996Z (Reading database ... 50% 2021-05-18T14:16:37.6485221Z (Reading database ... 55% 2021-05-18T14:16:37.6526121Z (Reading database ... 60% 2021-05-18T14:16:37.6555539Z (Reading database ... 65% 2021-05-18T14:16:37.6671819Z (Reading database ... 70% 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.../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-05-18T14:16:37.8728469Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-18T14:16:37.9157396Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-05-18T14:16:37.9358844Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-05-18T14:16:37.9371499Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-18T14:16:38.0057941Z Selecting previously unselected package libsource-highlight4v5. 2021-05-18T14:16:38.0281954Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-05-18T14:16:38.0290718Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-18T14:16:38.0757341Z Selecting previously unselected package libxxhash0:amd64. 2021-05-18T14:16:38.0957997Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-05-18T14:16:38.0976048Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-05-18T14:16:38.1264499Z Selecting previously unselected package gdb. 2021-05-18T14:16:38.1439672Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-05-18T14:16:38.1451706Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-18T14:16:38.4389109Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-05-18T14:16:38.4651606Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-18T14:16:38.4658259Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:16:43.8812063Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-05-18T14:16:43.9073575Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-18T14:16:43.9081935Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:16:46.6111718Z Selecting previously unselected package rustc. 2021-05-18T14:16:46.6327794Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-18T14:16:46.6333351Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:16:46.8041664Z Selecting previously unselected package cargo. 2021-05-18T14:16:46.8303117Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ... 2021-05-18T14:16:46.8310993Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-18T14:16:47.1302233Z Selecting previously unselected package libc6-dbg:amd64. 2021-05-18T14:16:47.1532317Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ... 2021-05-18T14:16:47.1541030Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-18T14:16:48.2129949Z Selecting previously unselected package rust-gdb. 2021-05-18T14:16:48.2392564Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ... 2021-05-18T14:16:48.2400050Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:16:48.2966737Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:16:48.2990150Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-18T14:16:48.3010029Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-18T14:16:48.3033641Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:16:48.3059084Z Setting up libipt2 (2.0.1-1) ... 2021-05-18T14:16:48.3078986Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-18T14:16:48.3099559Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-18T14:16:48.3117505Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:16:48.3138755Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-18T14:16:48.3159119Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-18T14:16:48.3175457Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-18T14:16:48.3192336Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-18T14:16:48.3218280Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:16:48.3240858Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:16:48.3432716Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:16:51.3612411Z Reading package lists... 2021-05-18T14:16:51.4927045Z Building dependency tree... 2021-05-18T14:16:51.4944833Z Reading state information... 2021-05-18T14:16:51.6360566Z The following additional packages will be installed: 2021-05-18T14:16:51.6362769Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-18T14:16:51.6364583Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-18T14:16:51.6366294Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-18T14:16:51.6367917Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-18T14:16:51.6369567Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-18T14:16:51.6371183Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-18T14:16:51.6372702Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-18T14:16:51.6374362Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-18T14:16:51.6375846Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-18T14:16:51.6377543Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-18T14:16:51.6379048Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-18T14:16:51.6380516Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-18T14:16:51.6383139Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-18T14:16:51.6387174Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-18T14:16:51.6388570Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-18T14:16:51.6389891Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-18T14:16:51.6391144Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-18T14:16:51.6392426Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-18T14:16:51.6393765Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-18T14:16:51.6394842Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-18T14:16:51.6396187Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-18T14:16:51.6397308Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-18T14:16:51.6398344Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-18T14:16:51.6399338Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-18T14:16:51.6400349Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-18T14:16:51.6401578Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-18T14:16:51.6402807Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-18T14:16:51.6404043Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-18T14:16:51.6405322Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-18T14:16:51.6406522Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-18T14:16:51.6407636Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-18T14:16:51.6408759Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-18T14:16:51.6409951Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-18T14:16:51.6411161Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-18T14:16:51.6412476Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-18T14:16:51.6413791Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-18T14:16:51.6415009Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-18T14:16:51.6416198Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-18T14:16:51.6417355Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-18T14:16:51.6418767Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-18T14:16:51.6420048Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-18T14:16:51.6421197Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-18T14:16:51.6422380Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-18T14:16:51.6423757Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-18T14:16:51.6425171Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-18T14:16:51.6426405Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-18T14:16:51.6427614Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-18T14:16:51.6428921Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-18T14:16:51.6430043Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-18T14:16:51.6430695Z Suggested packages: 2021-05-18T14:16:51.6431618Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-18T14:16:51.6432765Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-18T14:16:51.6434055Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-18T14:16:51.6435339Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-18T14:16:51.6436565Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-18T14:16:51.6437729Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-18T14:16:51.6438982Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-18T14:16:51.6440236Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-18T14:16:51.6441404Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-18T14:16:51.6442618Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-18T14:16:51.6443937Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-18T14:16:51.6445305Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-18T14:16:51.6446559Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-18T14:16:51.6447474Z wpagui libengine-pkcs11-openssl 2021-05-18T14:16:52.6294472Z The following NEW packages will be installed: 2021-05-18T14:16:52.6298394Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-18T14:16:52.6321200Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-18T14:16:52.6322788Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-18T14:16:52.6323986Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-18T14:16:52.6325225Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-18T14:16:52.6326399Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-18T14:16:52.6327487Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-18T14:16:52.6328755Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-18T14:16:52.6330261Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-18T14:16:52.6331477Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-18T14:16:52.6332725Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-18T14:16:52.6333965Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-18T14:16:52.6335280Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-18T14:16:52.6336724Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-18T14:16:52.6338105Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-18T14:16:52.6339423Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-18T14:16:52.6340673Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-18T14:16:52.6342144Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-18T14:16:52.6343480Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-18T14:16:52.6344553Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-18T14:16:52.6345603Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-18T14:16:52.6346714Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-18T14:16:52.6347763Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-18T14:16:52.6348761Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-18T14:16:52.6349777Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-18T14:16:52.6350984Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-18T14:16:52.6352207Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-18T14:16:52.6353458Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-18T14:16:52.6354812Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-18T14:16:52.6356223Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-18T14:16:52.6357340Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-18T14:16:52.6358439Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-18T14:16:52.6359626Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-18T14:16:52.6360840Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-18T14:16:52.6362152Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-18T14:16:52.6364117Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-18T14:16:52.6365582Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-18T14:16:52.6366784Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-18T14:16:52.6367953Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-18T14:16:52.6369512Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-18T14:16:52.6370912Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-18T14:16:52.6372165Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-18T14:16:52.6373500Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-18T14:16:52.6374959Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-18T14:16:52.6376592Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-18T14:16:52.6377965Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-18T14:16:52.6379262Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-18T14:16:52.6380755Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-18T14:16:52.6382039Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-18T14:16:52.6382940Z 0 upgraded, 214 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:16:52.6383646Z Need to get 183 MB of archives. 2021-05-18T14:16:52.6384406Z After this operation, 776 MB of additional disk space will be used. 2021-05-18T14:16:52.6385944Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-18T14:16:52.6387927Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-18T14:16:52.6389860Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-18T14:16:52.6397682Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-18T14:16:52.6400022Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-18T14:16:52.6402128Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-18T14:16:52.6404013Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-18T14:16:52.6405933Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-18T14:16:52.6407837Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-18T14:16:52.6409617Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-18T14:16:52.6411553Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-18T14:16:52.6413558Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-18T14:16:52.6415553Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-18T14:16:52.6417208Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-18T14:16:52.6418974Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-18T14:16:52.6420737Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-18T14:16:52.6422427Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-18T14:16:52.6424256Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-18T14:16:52.6426344Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-18T14:16:52.6428002Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-18T14:16:52.6429629Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-18T14:16:52.6431166Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-18T14:16:52.6432776Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-18T14:16:52.6434562Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-18T14:16:52.6436499Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-18T14:16:52.6438139Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-18T14:16:52.6440072Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4 [735 kB] 2021-05-18T14:16:52.6441998Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-18T14:16:52.6443755Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-18T14:16:52.6445954Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-18T14:16:52.6447648Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-18T14:16:52.6449469Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-18T14:16:52.6451188Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-18T14:16:52.6453159Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-18T14:16:52.6455062Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-18T14:16:52.6456967Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-18T14:16:52.6459131Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-18T14:16:52.6461071Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-18T14:16:52.6462905Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-18T14:16:52.6464825Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-18T14:16:52.6466880Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-18T14:16:52.6468861Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-18T14:16:52.6470750Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-18T14:16:52.6472688Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-18T14:16:52.6474438Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-18T14:16:52.6476412Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-18T14:16:52.6478256Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-18T14:16:52.6479843Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-18T14:16:52.6481373Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-18T14:16:52.6483197Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-18T14:16:52.6485012Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-18T14:16:52.6486812Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-18T14:16:52.6488560Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-18T14:16:52.6490249Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-18T14:16:52.6491941Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-18T14:16:52.6493674Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-18T14:16:52.6495370Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-18T14:16:52.6497065Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-18T14:16:52.6498861Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-18T14:16:52.6500704Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-18T14:16:52.6502418Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-18T14:16:52.6504056Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-18T14:16:52.6505985Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-18T14:16:52.6507835Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-18T14:16:52.6509639Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-18T14:16:52.6511356Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-18T14:16:52.6513018Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-18T14:16:52.6514835Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-18T14:16:52.6516985Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-18T14:16:52.6518924Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-18T14:16:52.6520962Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-18T14:16:52.6523092Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-18T14:16:52.6525076Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-18T14:16:52.6527006Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-18T14:16:52.6528881Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-18T14:16:52.6530764Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-18T14:16:52.6532661Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-18T14:16:52.6534827Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-18T14:16:52.6536780Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-18T14:16:52.6538973Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-18T14:16:52.6541103Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-18T14:16:52.6542957Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-18T14:16:52.6544724Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-18T14:16:52.6546401Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-18T14:16:52.6548399Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-18T14:16:52.6550357Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-18T14:16:52.6552142Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-18T14:16:52.6553930Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-18T14:16:52.6555760Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-18T14:16:52.6557638Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-18T14:16:52.6559353Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-18T14:16:52.6560991Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-18T14:16:52.6562923Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-18T14:16:52.6565132Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-18T14:16:52.6566891Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-18T14:16:52.6568682Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-18T14:16:52.6570708Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-18T14:16:52.6572646Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-18T14:16:52.6574395Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-18T14:16:52.6576186Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-18T14:16:52.6577904Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-18T14:16:52.6580009Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-18T14:16:52.6582014Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-18T14:16:52.6583736Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-18T14:16:52.6585590Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-18T14:16:52.6587681Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-18T14:16:52.6589511Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-18T14:16:53.2638125Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-18T14:16:53.2655304Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-18T14:16:53.2692105Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-18T14:16:53.3328750Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-18T14:16:53.3763329Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-18T14:16:53.3768724Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-18T14:16:53.3778668Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4 [619 kB] 2021-05-18T14:16:53.3828781Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-18T14:16:53.3835103Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-18T14:16:53.4034779Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-18T14:16:53.4110085Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-18T14:16:53.4124003Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-18T14:16:53.4129371Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-18T14:16:53.4132733Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-18T14:16:53.4154165Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-18T14:16:53.4165150Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-18T14:16:53.4168119Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-18T14:16:53.4172240Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-18T14:16:53.4184618Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-18T14:16:53.4188963Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-18T14:16:53.4193710Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-18T14:16:53.4200194Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-18T14:16:53.4203518Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-18T14:16:53.4209167Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-18T14:16:53.4218615Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-18T14:16:53.4230710Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-18T14:16:53.4338747Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-18T14:16:53.4350440Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-18T14:16:53.4352238Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-18T14:16:53.4382547Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-18T14:16:53.4432203Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-18T14:16:53.4446484Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-18T14:16:53.4460224Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-18T14:16:53.4462147Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-18T14:16:53.4476635Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-18T14:16:53.4480566Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-18T14:16:53.4485482Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-18T14:16:53.4497770Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-18T14:16:53.4501905Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-18T14:16:53.4504126Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-18T14:16:53.4544995Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-18T14:16:53.4702581Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-18T14:16:53.5832827Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-18T14:16:53.5836726Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-18T14:16:53.5875790Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-18T14:16:53.5955456Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-18T14:16:53.5990200Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-18T14:16:53.6189382Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-18T14:16:53.6209412Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-18T14:16:53.7205610Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-18T14:16:53.7374029Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-18T14:16:53.7631283Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-18T14:16:53.7901705Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-18T14:16:53.7929289Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-18T14:16:53.7948692Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-18T14:16:53.7955118Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-18T14:16:53.8014991Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-18T14:16:53.8019928Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-18T14:16:53.8032545Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-18T14:16:53.8279473Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-18T14:16:53.8620322Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-18T14:16:53.8649690Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-18T14:16:53.8920111Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-18T14:16:53.8924658Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-18T14:16:53.8937049Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-18T14:16:53.8940368Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-18T14:16:53.8950735Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-18T14:16:53.8952339Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-18T14:16:53.8980680Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-18T14:16:53.8982626Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-18T14:16:53.8991936Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-18T14:16:53.8993819Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-18T14:16:53.8998750Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-18T14:16:53.9003642Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-18T14:16:53.9011318Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-18T14:16:53.9139451Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-18T14:16:53.9144406Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-18T14:16:53.9468287Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-18T14:16:53.9470098Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-18T14:16:53.9474542Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-18T14:16:53.9502335Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-18T14:16:53.9505721Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-18T14:16:53.9515633Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.3 [363 kB] 2021-05-18T14:16:53.9553803Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-18T14:16:53.9555435Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-18T14:16:53.9696038Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-18T14:16:53.9707030Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-18T14:16:53.9716272Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-18T14:16:53.9882251Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-18T14:16:53.9902083Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-18T14:16:53.9913183Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-18T14:16:53.9915559Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-18T14:16:53.9925069Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-18T14:16:54.0095797Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-18T14:16:54.0650862Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-18T14:16:54.0687067Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-18T14:16:54.0763153Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-18T14:16:54.3578623Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-18T14:16:54.4311747Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-18T14:16:54.4352966Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-18T14:16:54.4369771Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-18T14:16:54.4455335Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-18T14:16:54.4476346Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-18T14:16:54.4704590Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-18T14:16:54.4883718Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-18T14:16:54.4902536Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-18T14:16:54.4910251Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-18T14:16:55.4891188Z Fetched 183 MB in 3s (66.1 MB/s) 2021-05-18T14:16:55.5237974Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-18T14:16:55.5285732Z (Reading database ... 2021-05-18T14:16:55.5286507Z (Reading database ... 5% 2021-05-18T14:16:55.5287389Z (Reading database ... 10% 2021-05-18T14:16:55.5287882Z (Reading database ... 15% 2021-05-18T14:16:55.5288349Z (Reading database ... 20% 2021-05-18T14:16:55.5288853Z (Reading database ... 25% 2021-05-18T14:16:55.5289298Z (Reading database ... 30% 2021-05-18T14:16:55.5289754Z (Reading database ... 35% 2021-05-18T14:16:55.5290211Z (Reading database ... 40% 2021-05-18T14:16:55.5290649Z (Reading database ... 45% 2021-05-18T14:16:55.5291106Z (Reading database ... 50% 2021-05-18T14:16:55.5322611Z (Reading database ... 55% 2021-05-18T14:16:55.5365734Z (Reading database ... 60% 2021-05-18T14:16:55.5395278Z (Reading database ... 65% 2021-05-18T14:16:55.5507145Z (Reading database ... 70% 2021-05-18T14:16:55.5616946Z (Reading database ... 75% 2021-05-18T14:16:55.5641118Z (Reading database ... 80% 2021-05-18T14:16:55.5986153Z (Reading database ... 85% 2021-05-18T14:16:55.6255356Z (Reading database ... 90% 2021-05-18T14:16:55.6326666Z (Reading database ... 95% 2021-05-18T14:16:55.6327520Z (Reading database ... 100% 2021-05-18T14:16:55.6328582Z (Reading database ... 269928 files and directories currently installed.) 2021-05-18T14:16:55.6427807Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-05-18T14:16:55.6443292Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-05-18T14:16:55.6747060Z Selecting previously unselected package libqt5core5a:amd64. 2021-05-18T14:16:55.6997303Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-18T14:16:55.7069361Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:55.8781353Z Selecting previously unselected package libegl-mesa0:amd64. 2021-05-18T14:16:55.9040539Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:16:55.9057574Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:16:55.9342209Z Selecting previously unselected package libegl1:amd64. 2021-05-18T14:16:55.9603572Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:16:55.9615335Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:16:55.9865473Z Selecting previously unselected package libevdev2:amd64. 2021-05-18T14:16:56.0124485Z Preparing to unpack .../004-libevdev2_1.9.0+dfsg-1ubuntu0.1_amd64.deb ... 2021-05-18T14:16:56.0134180Z Unpacking libevdev2:amd64 (1.9.0+dfsg-1ubuntu0.1) ... 2021-05-18T14:16:56.0389330Z Selecting previously unselected package libmtdev1:amd64. 2021-05-18T14:16:56.0645687Z Preparing to unpack .../005-libmtdev1_1.1.5-1.1_amd64.deb ... 2021-05-18T14:16:56.0652985Z Unpacking libmtdev1:amd64 (1.1.5-1.1) ... 2021-05-18T14:16:56.0875243Z Selecting previously unselected package libwacom-common. 2021-05-18T14:16:56.1135504Z Preparing to unpack .../006-libwacom-common_1.3-2ubuntu3_all.deb ... 2021-05-18T14:16:56.1144497Z Unpacking libwacom-common (1.3-2ubuntu3) ... 2021-05-18T14:16:56.1797569Z Selecting previously unselected package libwacom2:amd64. 2021-05-18T14:16:56.2052820Z Preparing to unpack .../007-libwacom2_1.3-2ubuntu3_amd64.deb ... 2021-05-18T14:16:56.2060707Z Unpacking libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-18T14:16:56.2317225Z Selecting previously unselected package libinput-bin. 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(5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:56.5157584Z Selecting previously unselected package libxcb-icccm4:amd64. 2021-05-18T14:16:56.5359082Z Preparing to unpack .../012-libxcb-icccm4_0.4.1-1.1_amd64.deb ... 2021-05-18T14:16:56.5369219Z Unpacking libxcb-icccm4:amd64 (0.4.1-1.1) ... 2021-05-18T14:16:56.5677245Z Selecting previously unselected package libxcb-util1:amd64. 2021-05-18T14:16:56.5844867Z Preparing to unpack .../013-libxcb-util1_0.4.0-0ubuntu3_amd64.deb ... 2021-05-18T14:16:56.5860400Z Unpacking libxcb-util1:amd64 (0.4.0-0ubuntu3) ... 2021-05-18T14:16:56.6118251Z Selecting previously unselected package libxcb-image0:amd64. 2021-05-18T14:16:56.6336323Z Preparing to unpack .../014-libxcb-image0_0.4.0-1build1_amd64.deb ... 2021-05-18T14:16:56.6351787Z Unpacking libxcb-image0:amd64 (0.4.0-1build1) ... 2021-05-18T14:16:56.6565194Z Selecting previously unselected package libxcb-keysyms1:amd64. 2021-05-18T14:16:56.6821246Z Preparing to unpack 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2021-05-18T14:17:27.9431397Z Setting up geoclue-2.0 (2.5.6-0ubuntu1) ... 2021-05-18T14:17:28.3216388Z geoclue.service is a disabled or a static unit, not starting it. 2021-05-18T14:17:28.3233987Z Setting up libqt5serialport5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:28.3269814Z Setting up python3-nbformat (5.0.4-1) ... 2021-05-18T14:17:28.4800162Z Setting up libmbim-proxy (1.22.0-2) ... 2021-05-18T14:17:28.4822169Z Setting up python3-pyproj (2.5.0+ds-1) ... 2021-05-18T14:17:28.6343022Z Setting up libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:28.6361510Z Setting up python3-bs4 (4.8.2-1) ... 2021-05-18T14:17:28.8171724Z Setting up libgeotiff5:amd64 (1.5.1-2) ... 2021-05-18T14:17:28.8200189Z Setting up gcr (3.36.0-2build1) ... 2021-05-18T14:17:28.8222808Z Setting up libqt5sql5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:28.8240873Z Setting up wpasupplicant (2:2.9-1ubuntu4.3) ... 2021-05-18T14:17:28.9679092Z Created symlink /etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-18T14:17:28.9681315Z Created symlink /etc/systemd/system/multi-user.target.wants/wpa_supplicant.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-18T14:17:29.4221699Z Setting up python3-pil:amd64 (7.0.0-4ubuntu0.3) ... 2021-05-18T14:17:29.7008805Z Setting up libqt5xml5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:29.7028971Z Setting up gstreamer1.0-plugins-base:amd64 (1.16.2-4) ... 2021-05-18T14:17:29.7047392Z Setting up libqt5qml5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:29.7071167Z Setting up qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.7092273Z Setting up qtattributionsscanner-qt5 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:29.7112076Z Setting up libqt5webchannel5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:29.7133128Z Setting up python3-plotly (4.4.1+dfsg-1) ... 2021-05-18T14:17:29.8583663Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:29.8585221Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-18T14:17:29.8586588Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:29.8587877Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-18T14:17:29.8965027Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:29.8966177Z if direction is "increasing": 2021-05-18T14:17:29.8967571Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:29.8968586Z elif direction is "decreasing": 2021-05-18T14:17:29.9133672Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:29.9134766Z if direction is "increasing": 2021-05-18T14:17:29.9136110Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:29.9137068Z elif direction is "decreasing": 2021-05-18T14:17:30.7731806Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:30.7733206Z if props["offset_coordinates"] is "data": 2021-05-18T14:17:30.7734889Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-18T14:17:30.7736061Z if props["coordinates"] is not "data": 2021-05-18T14:17:31.4628016Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-18T14:17:31.9963959Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-18T14:17:31.9966284Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-18T14:17:31.9968541Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-18T14:17:33.0306591Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-18T14:17:33.0329748Z First installation detected... 2021-05-18T14:17:33.0330639Z Checking NSS setup... 2021-05-18T14:17:33.0365540Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-18T14:17:33.0384438Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:33.0406975Z Setting up python3-owslib (0.19.1-1) ... 2021-05-18T14:17:33.3096748Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-18T14:17:33.3116044Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-18T14:17:33.3143312Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-18T14:17:33.3167636Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-18T14:17:33.3201356Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-18T14:17:33.3228940Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-18T14:17:33.3270560Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-18T14:17:33.3292564Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-18T14:17:33.3316896Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-18T14:17:33.5038394Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-18T14:17:33.5073291Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-18T14:17:33.5091404Z Setting up grass-core (7.8.2-1build3) ... 2021-05-18T14:17:33.8243034Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:33.8244864Z if value is '': 2021-05-18T14:17:33.9171615Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:33.9172567Z if do_profiling is "True" or do_profiling is "1": 2021-05-18T14:17:33.9173531Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:33.9174364Z if do_profiling is "True" or do_profiling is "1": 2021-05-18T14:17:33.9175299Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-18T14:17:33.9176163Z if driver_string is not None and driver_string is not "": 2021-05-18T14:17:33.9592131Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:33.9593668Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-18T14:17:33.9595035Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:17:33.9596518Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-18T14:17:34.0186900Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-18T14:17:34.0204728Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.0273975Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-18T14:17:34.0291617Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.0312213Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.0476462Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.0499312Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.0526505Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.0543687Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:34.0563406Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.0581977Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-18T14:17:34.1419418Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.1440189Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.1472487Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.1493230Z Setting up modemmanager (1.12.8-1) ... 2021-05-18T14:17:34.2666934Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-18T14:17:34.2669748Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-18T14:17:34.7720903Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.7746144Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.7769669Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-18T14:17:34.7800480Z Setting up libqt5svg5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.7829952Z Setting up libqt53drender5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.7851911Z Setting up qhelpgenerator-qt5 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.7889948Z Setting up libqwt-qt5-6 (6.1.4-1.1build1) ... 2021-05-18T14:17:34.7910242Z Setting up libqscintilla2-qt5-15 (2.11.2+dfsg-6) ... 2021-05-18T14:17:34.7935235Z Setting up libqt5webkit5:amd64 (5.212.0~alpha4-1ubuntu2) ... 2021-05-18T14:17:34.7955185Z Setting up libqt5designercomponents5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.7974540Z Setting up libqt5quickwidgets5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.7998758Z Setting up libqgis-core3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:34.8015262Z Setting up libqt53dquickscene2d5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.8042252Z Setting up libqgis-gui3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:34.8061729Z Setting up libqgis-analysis3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:34.8085105Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.8102611Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-18T14:17:34.8122983Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:34.8143775Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.8164275Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-18T14:17:34.9672936Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-18T14:17:34.9696192Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.9717755Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:34.9752338Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.2018682Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:18:05.2040694Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-18T14:18:05.2058805Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.2076713Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:18:05.2093883Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.2110925Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.2136806Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:18:05.2164887Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.3499913Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.3529189Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-18T14:18:05.3548030Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.3564430Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-18T14:18:05.3582429Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.5123408Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.5142686Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.5176722Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:18:05.5281402Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-18T14:18:05.5447835Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-18T14:18:06.4058923Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-18T14:18:06.4217552Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-18T14:18:06.4435457Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-18T14:18:06.4574909Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-18T14:18:06.5568312Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:18:06.5827304Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-18T14:18:06.8170832Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:18:17.1588325Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-18T14:18:17.1749821Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-18T14:18:19.0896128Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-18T14:18:19.0896654Z with: 2021-05-18T14:18:19.0897169Z github_slug: neuroconductor/freesurferformats 2021-05-18T14:18:19.0897674Z env: 2021-05-18T14:18:19.0898085Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:18:19.0898526Z TIC_DEPLOY_KEY: 2021-05-18T14:18:19.0899279Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:18:19.0900933Z GITHUB_PAT: *** 2021-05-18T14:18:19.0901675Z COVERALLS_TOKEN: *** 2021-05-18T14:18:19.0902139Z continue-on-error: true 2021-05-18T14:18:19.0902585Z VDIFFR_RUN_TESTS: 2021-05-18T14:18:19.0903033Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:18:19.0903457Z TZ: UTC 2021-05-18T14:18:19.0903809Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:18:19.0904201Z NOT_CRAN: true 2021-05-18T14:18:19.0904560Z ##[endgroup] 2021-05-18T14:18:19.1212092Z repo slug is: neuroconductor/freesurferformats 2021-05-18T14:18:19.1292331Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-18T14:18:19.1292855Z env: 2021-05-18T14:18:19.1293272Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:18:19.1293714Z TIC_DEPLOY_KEY: 2021-05-18T14:18:19.1294456Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:18:19.1295693Z GITHUB_PAT: *** 2021-05-18T14:18:19.1296441Z COVERALLS_TOKEN: *** 2021-05-18T14:18:19.1296891Z continue-on-error: true 2021-05-18T14:18:19.1297333Z VDIFFR_RUN_TESTS: 2021-05-18T14:18:19.1297791Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:18:19.1298202Z TZ: UTC 2021-05-18T14:18:19.1298571Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:18:19.1298947Z NOT_CRAN: true 2021-05-18T14:18:19.1299299Z ##[endgroup] 2021-05-18T14:18:19.3136056Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-18T14:18:19.3136609Z with: 2021-05-18T14:18:19.3137018Z repo_name: freesurferformats 2021-05-18T14:18:19.3137477Z repo_version: 0.1.13 2021-05-18T14:18:19.3137834Z runner_os: Linux 2021-05-18T14:18:19.3138189Z R_version: 4.1 2021-05-18T14:18:19.3138518Z env: 2021-05-18T14:18:19.3138911Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:18:19.3139353Z TIC_DEPLOY_KEY: 2021-05-18T14:18:19.3140095Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:18:19.3141345Z GITHUB_PAT: *** 2021-05-18T14:18:19.3142093Z COVERALLS_TOKEN: *** 2021-05-18T14:18:19.3142544Z continue-on-error: true 2021-05-18T14:18:19.3142990Z VDIFFR_RUN_TESTS: 2021-05-18T14:18:19.3143445Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:18:19.3143850Z TZ: UTC 2021-05-18T14:18:19.3144215Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:18:19.3144594Z NOT_CRAN: true 2021-05-18T14:18:19.3144972Z ##[endgroup] 2021-05-18T14:18:19.3465147Z Package: freesurferformats 2021-05-18T14:18:19.3467810Z Version: 0.1.13 2021-05-18T14:18:19.3468425Z OS: Linux 2021-05-18T14:18:19.3532029Z ##[group]Run install.packages('remotes') 2021-05-18T14:18:19.3532695Z install.packages('remotes') 2021-05-18T14:18:19.3533457Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-18T14:18:19.3534382Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-18T14:18:19.3540842Z shell: /usr/local/bin/Rscript {0} 2021-05-18T14:18:19.3541223Z env: 2021-05-18T14:18:19.3541646Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:18:19.3542089Z TIC_DEPLOY_KEY: 2021-05-18T14:18:19.3542856Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:18:19.3544089Z GITHUB_PAT: *** 2021-05-18T14:18:19.3544830Z COVERALLS_TOKEN: *** 2021-05-18T14:18:19.3545299Z continue-on-error: true 2021-05-18T14:18:19.3545753Z VDIFFR_RUN_TESTS: 2021-05-18T14:18:19.3546202Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:18:19.3546639Z TZ: UTC 2021-05-18T14:18:19.3547014Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:18:19.3547410Z NOT_CRAN: true 2021-05-18T14:18:19.3547755Z ##[endgroup] 2021-05-18T14:18:19.5235273Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:18:19.5247263Z (as ‘lib’ is unspecified) 2021-05-18T14:18:33.2927762Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-18T14:18:33.5625867Z Content type 'binary/octet-stream' length 148709 bytes (145 KB) 2021-05-18T14:18:33.5732943Z ================================================== 2021-05-18T14:18:33.5733806Z downloaded 145 KB 2021-05-18T14:18:33.5734272Z 2021-05-18T14:18:33.8496556Z * installing *source* package ‘remotes’ ... 2021-05-18T14:18:33.8535412Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-05-18T14:18:33.8536633Z ** using staged installation 2021-05-18T14:18:33.8692588Z ** R 2021-05-18T14:18:33.8871974Z ** inst 2021-05-18T14:18:33.8882171Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:18:35.5100433Z ** help 2021-05-18T14:18:35.5937353Z *** installing help indices 2021-05-18T14:18:35.6473137Z ** building package indices 2021-05-18T14:18:35.8644261Z ** installing vignettes 2021-05-18T14:18:35.8706728Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:18:36.0370267Z ** testing if installed package can be loaded from final location 2021-05-18T14:18:36.2333620Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:18:36.2354056Z * DONE (remotes) 2021-05-18T14:18:36.2437207Z 2021-05-18T14:18:36.2438336Z The downloaded source packages are in 2021-05-18T14:18:36.2439627Z ‘/tmp/Rtmp5PK2vW/downloaded_packages’ 2021-05-18T14:18:52.3748421Z ##[group]Run actions/cache@v1 2021-05-18T14:18:52.3748829Z with: 2021-05-18T14:18:52.3749232Z path: /home/runner/work/_temp/Library 2021-05-18T14:18:52.3751961Z key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-8df7e297b977c2517f90117636d0d03a5f055b339b3dd6c722e3c8edc18f53bf 2021-05-18T14:18:52.3755464Z restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1- 2021-05-18T14:18:52.3756851Z env: 2021-05-18T14:18:52.3757272Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:18:52.3757723Z TIC_DEPLOY_KEY: 2021-05-18T14:18:52.3758520Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:18:52.3760240Z GITHUB_PAT: *** 2021-05-18T14:18:52.3761002Z COVERALLS_TOKEN: *** 2021-05-18T14:18:52.3761456Z continue-on-error: true 2021-05-18T14:18:52.3761906Z VDIFFR_RUN_TESTS: 2021-05-18T14:18:52.3762369Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:18:52.3762832Z TZ: UTC 2021-05-18T14:18:52.3763237Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:18:52.3763630Z NOT_CRAN: true 2021-05-18T14:18:52.3763981Z ##[endgroup] 2021-05-18T14:18:52.4157327Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-18T14:18:52.4210046Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-18T14:18:52.4210825Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-18T14:18:52.4211588Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-18T14:18:52.4212294Z sudo -s eval "$sysreqs" 2021-05-18T14:18:52.4253905Z shell: /usr/bin/bash -e {0} 2021-05-18T14:18:52.4254275Z env: 2021-05-18T14:18:52.4254703Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:18:52.4255145Z TIC_DEPLOY_KEY: 2021-05-18T14:18:52.4255907Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:18:52.4257155Z GITHUB_PAT: *** 2021-05-18T14:18:52.4257902Z COVERALLS_TOKEN: *** 2021-05-18T14:18:52.4258374Z continue-on-error: true 2021-05-18T14:18:52.4258833Z VDIFFR_RUN_TESTS: 2021-05-18T14:18:52.4259283Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:18:52.4259710Z TZ: UTC 2021-05-18T14:18:52.4260097Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:18:52.4260489Z NOT_CRAN: true 2021-05-18T14:18:52.4260927Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-18T14:18:52.4261383Z ##[endgroup] 2021-05-18T14:18:52.5998960Z Using github PAT from envvar GITHUB_PAT 2021-05-18T14:18:53.0079843Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-18T14:19:07.4018934Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-18T14:19:07.4020288Z crayon (NA -> 1.4.1) [CRAN] 2021-05-18T14:19:07.4021210Z R6 (NA -> 2.5.0) [CRAN] 2021-05-18T14:19:07.4022095Z desc (NA -> 1.3.0) [CRAN] 2021-05-18T14:19:07.4022981Z debugme (NA -> 1.1.0) [CRAN] 2021-05-18T14:19:07.4046167Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-18T14:19:07.4056581Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:19:07.4057562Z (as ‘lib’ is unspecified) 2021-05-18T14:19:20.6825117Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-18T14:19:21.0689930Z Content type 'binary/octet-stream' length 61445 bytes (60 KB) 2021-05-18T14:19:21.0742513Z ================================================== 2021-05-18T14:19:21.0743301Z downloaded 60 KB 2021-05-18T14:19:21.0743747Z 2021-05-18T14:19:21.0772973Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-18T14:19:21.2459427Z Content type 'binary/octet-stream' length 35834 bytes (34 KB) 2021-05-18T14:19:21.2472307Z ================================================== 2021-05-18T14:19:21.2473109Z downloaded 34 KB 2021-05-18T14:19:21.2473572Z 2021-05-18T14:19:21.2499753Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-18T14:19:21.4131228Z Content type 'binary/octet-stream' length 64110 bytes (62 KB) 2021-05-18T14:19:21.4190864Z ================================================== 2021-05-18T14:19:21.4191513Z downloaded 62 KB 2021-05-18T14:19:21.4191905Z 2021-05-18T14:19:21.4221022Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-18T14:19:21.5847531Z Content type 'binary/octet-stream' length 292756 bytes (285 KB) 2021-05-18T14:19:21.6013459Z ================================================== 2021-05-18T14:19:21.6014320Z downloaded 285 KB 2021-05-18T14:19:21.6014946Z 2021-05-18T14:19:21.6041931Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-18T14:19:21.8865463Z Content type 'application/x-tar' length 997019 bytes (973 KB) 2021-05-18T14:19:21.9142725Z ================================================== 2021-05-18T14:19:21.9143514Z downloaded 973 KB 2021-05-18T14:19:21.9143988Z 2021-05-18T14:19:22.1464539Z * installing *source* package ‘rprojroot’ ... 2021-05-18T14:19:22.1486913Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:22.1488665Z ** using staged installation 2021-05-18T14:19:22.1617426Z ** R 2021-05-18T14:19:22.1660620Z ** inst 2021-05-18T14:19:22.1670124Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:22.6037530Z ** help 2021-05-18T14:19:22.6283609Z *** installing help indices 2021-05-18T14:19:22.6538145Z *** copying figures 2021-05-18T14:19:22.6542498Z ** building package indices 2021-05-18T14:19:22.8396993Z ** installing vignettes 2021-05-18T14:19:22.8403756Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:23.0043574Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:23.1719283Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:23.1726964Z * DONE (rprojroot) 2021-05-18T14:19:23.3948272Z * installing *source* package ‘crayon’ ... 2021-05-18T14:19:23.3964439Z ** package ‘crayon’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:23.3965519Z ** using staged installation 2021-05-18T14:19:23.4085083Z ** R 2021-05-18T14:19:23.4165462Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:24.1756822Z ** help 2021-05-18T14:19:24.2244178Z *** installing help indices 2021-05-18T14:19:24.2593590Z ** building package indices 2021-05-18T14:19:24.4645432Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:24.6321852Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:24.8062713Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:24.8072446Z * DONE (crayon) 2021-05-18T14:19:25.0209490Z * installing *source* package ‘R6’ ... 2021-05-18T14:19:25.0224854Z ** package ‘R6’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:25.0226075Z ** using staged installation 2021-05-18T14:19:25.0340853Z ** R 2021-05-18T14:19:25.0401636Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:25.4799299Z ** help 2021-05-18T14:19:25.4988347Z *** installing help indices 2021-05-18T14:19:25.5169806Z *** copying figures 2021-05-18T14:19:25.5173193Z ** building package indices 2021-05-18T14:19:25.6952437Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:25.8580643Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:26.0246281Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:26.0254471Z * DONE (R6) 2021-05-18T14:19:26.3076488Z * installing *source* package ‘desc’ ... 2021-05-18T14:19:26.3122530Z ** package ‘desc’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:26.3123680Z ** using staged installation 2021-05-18T14:19:26.3264966Z ** R 2021-05-18T14:19:26.3381570Z ** inst 2021-05-18T14:19:26.3394921Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:27.7149305Z ** help 2021-05-18T14:19:27.8337620Z *** installing help indices 2021-05-18T14:19:27.9130058Z ** building package indices 2021-05-18T14:19:28.1604291Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:28.3343328Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:28.5326756Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:28.5344219Z * DONE (desc) 2021-05-18T14:19:28.7686978Z * installing *source* package ‘debugme’ ... 2021-05-18T14:19:28.7717419Z ** package ‘debugme’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:28.7718643Z ** using staged installation 2021-05-18T14:19:28.7814798Z ** R 2021-05-18T14:19:28.7842536Z ** inst 2021-05-18T14:19:28.7861169Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:29.0756882Z ** help 2021-05-18T14:19:29.0859789Z *** installing help indices 2021-05-18T14:19:29.1054728Z ** building package indices 2021-05-18T14:19:29.2820910Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:29.4495927Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:29.6178676Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:29.6185014Z * DONE (debugme) 2021-05-18T14:19:29.6236783Z 2021-05-18T14:19:29.6237759Z The downloaded source packages are in 2021-05-18T14:19:29.6239056Z ‘/tmp/RtmpmApd93/downloaded_packages’ 2021-05-18T14:19:29.6253312Z Running `R CMD build`... 2021-05-18T14:19:29.8446814Z * checking for file ‘/tmp/RtmpmApd93/remotes6a0d4f23b514/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-18T14:19:29.8448356Z * preparing ‘sysreqs’: 2021-05-18T14:19:29.8449415Z * checking DESCRIPTION meta-information ... OK 2021-05-18T14:19:29.8450619Z * checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:19:29.8451555Z * checking for empty or unneeded directories 2021-05-18T14:19:29.8452515Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:19:29.8453425Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-18T14:19:29.8454621Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:19:29.8455555Z (as ‘lib’ is unspecified) 2021-05-18T14:19:30.0345024Z * installing *source* package ‘sysreqs’ ... 2021-05-18T14:19:30.0346616Z ** using staged installation 2021-05-18T14:19:30.0469020Z ** R 2021-05-18T14:19:30.0500000Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:30.3796697Z ** help 2021-05-18T14:19:30.3986315Z *** installing help indices 2021-05-18T14:19:30.4145073Z ** building package indices 2021-05-18T14:19:30.5909181Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:30.7675325Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:30.9470960Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:30.9476964Z * DONE (sysreqs) 2021-05-18T14:19:46.6167935Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-18T14:19:46.6169731Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-05-18T14:19:46.6171113Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-05-18T14:19:46.6388887Z Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-18T14:19:46.6990992Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-18T14:19:46.7632797Z Hit:6 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-18T14:19:46.8052326Z Hit:7 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-18T14:19:46.9210045Z Hit:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-18T14:19:47.0788102Z Hit:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-18T14:19:48.1970391Z Reading package lists... 2021-05-18T14:19:48.2671923Z Reading package lists... 2021-05-18T14:19:48.4044871Z Building dependency tree... 2021-05-18T14:19:48.4066129Z Reading state information... 2021-05-18T14:19:48.5455875Z libicu-dev is already the newest version (66.1-2ubuntu2). 2021-05-18T14:19:48.5457441Z libicu-dev set to manually installed. 2021-05-18T14:19:48.5458731Z libxml2-dev is already the newest version (2.9.10+dfsg-5). 2021-05-18T14:19:48.5459950Z libxml2-dev set to manually installed. 2021-05-18T14:19:48.5461161Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.3). 2021-05-18T14:19:48.5462344Z pandoc is already the newest version (2.7.3-1). 2021-05-18T14:19:48.5463365Z The following additional packages will be installed: 2021-05-18T14:19:48.5464761Z libbibutils6 libghc-pandoc-citeproc-data 2021-05-18T14:19:48.5469026Z Suggested packages: 2021-05-18T14:19:48.5470602Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev 2021-05-18T14:19:48.5888774Z The following NEW packages will be installed: 2021-05-18T14:19:48.5893347Z libbibutils6 libcurl4-openssl-dev libghc-pandoc-citeproc-data 2021-05-18T14:19:48.5894746Z pandoc-citeproc 2021-05-18T14:19:48.6064376Z 0 upgraded, 4 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:19:48.6065725Z Need to get 13.7 MB of archives. 2021-05-18T14:19:48.6066999Z After this operation, 109 MB of additional disk space will be used. 2021-05-18T14:19:48.6069505Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB] 2021-05-18T14:19:48.6138013Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-18T14:19:48.6184940Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB] 2021-05-18T14:19:48.6199691Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB] 2021-05-18T14:19:49.2260086Z Fetched 13.7 MB in 0s (61.8 MB/s) 2021-05-18T14:19:49.2598245Z Selecting previously unselected package libbibutils6. 2021-05-18T14:19:49.2647915Z (Reading database ... 2021-05-18T14:19:49.2648688Z (Reading database ... 5% 2021-05-18T14:19:49.2649349Z (Reading database ... 10% 2021-05-18T14:19:49.2649976Z (Reading database ... 15% 2021-05-18T14:19:49.2650643Z (Reading database ... 20% 2021-05-18T14:19:49.2652295Z (Reading database ... 25% 2021-05-18T14:19:49.2652800Z (Reading database ... 30% 2021-05-18T14:19:49.2653260Z (Reading database ... 35% 2021-05-18T14:19:49.2653717Z (Reading database ... 40% 2021-05-18T14:19:49.2654160Z (Reading database ... 45% 2021-05-18T14:19:49.2654617Z (Reading database ... 50% 2021-05-18T14:19:49.2696791Z (Reading database ... 55% 2021-05-18T14:19:49.2743392Z (Reading database ... 60% 2021-05-18T14:19:49.2786786Z (Reading database ... 65% 2021-05-18T14:19:49.2968458Z (Reading database ... 70% 2021-05-18T14:19:49.3001289Z (Reading database ... 75% 2021-05-18T14:19:49.3249814Z (Reading database ... 80% 2021-05-18T14:19:49.3346177Z (Reading database ... 85% 2021-05-18T14:19:49.3715506Z (Reading database ... 90% 2021-05-18T14:19:49.3789179Z (Reading database ... 95% 2021-05-18T14:19:49.3789788Z (Reading database ... 100% 2021-05-18T14:19:49.3790610Z (Reading database ... 285139 files and directories currently installed.) 2021-05-18T14:19:49.3900005Z Preparing to unpack .../libbibutils6_6.2-1_amd64.deb ... 2021-05-18T14:19:49.3924001Z Unpacking libbibutils6 (6.2-1) ... 2021-05-18T14:19:49.4599004Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-18T14:19:49.4823619Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-18T14:19:49.4835624Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-18T14:19:49.5337347Z Selecting previously unselected package libghc-pandoc-citeproc-data. 2021-05-18T14:19:49.5616145Z Preparing to unpack .../libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ... 2021-05-18T14:19:49.5623734Z Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-18T14:19:49.5917900Z Selecting previously unselected package pandoc-citeproc. 2021-05-18T14:19:49.6163146Z Preparing to unpack .../pandoc-citeproc_0.15.0.1-1build4_amd64.deb ... 2021-05-18T14:19:49.6173176Z Unpacking pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-18T14:19:49.6202878Z Replaced by files in installed package pandoc (2.7.3-1) ... 2021-05-18T14:19:50.9226907Z Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-18T14:19:50.9253661Z Setting up libbibutils6 (6.2-1) ... 2021-05-18T14:19:50.9278698Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-18T14:19:50.9316744Z Setting up pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-18T14:19:50.9341917Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:19:53.9668611Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:19:55.8925066Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-18T14:19:55.8925733Z remotes::install_github("ropensci/tic") 2021-05-18T14:19:55.8926354Z remotes::install_github("muschellij2/ghtravis") 2021-05-18T14:19:55.8926998Z remotes::install_github("muschellij2/aghast") 2021-05-18T14:19:55.8927544Z remotes::install_cran("covr") 2021-05-18T14:19:55.8934062Z shell: /usr/local/bin/Rscript {0} 2021-05-18T14:19:55.8934462Z env: 2021-05-18T14:19:55.8934900Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:19:55.8935359Z TIC_DEPLOY_KEY: 2021-05-18T14:19:55.8936125Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:19:55.8937665Z GITHUB_PAT: *** 2021-05-18T14:19:55.8938512Z COVERALLS_TOKEN: *** 2021-05-18T14:19:55.8938999Z continue-on-error: true 2021-05-18T14:19:55.8939557Z VDIFFR_RUN_TESTS: 2021-05-18T14:19:55.8940037Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:19:55.8940497Z TZ: UTC 2021-05-18T14:19:55.8940874Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:19:55.8941250Z NOT_CRAN: true 2021-05-18T14:19:55.8941612Z ##[endgroup] 2021-05-18T14:19:56.0690783Z Using github PAT from envvar GITHUB_PAT 2021-05-18T14:19:56.7324106Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-18T14:20:11.3297363Z rlang (NA -> 0.4.11) [CRAN] 2021-05-18T14:20:11.3298716Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-18T14:20:11.3299692Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-18T14:20:11.3300589Z sys (NA -> 3.4 ) [CRAN] 2021-05-18T14:20:11.3301542Z askpass (NA -> 1.1 ) [CRAN] 2021-05-18T14:20:11.3302566Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-18T14:20:11.3303484Z mime (NA -> 0.10 ) [CRAN] 2021-05-18T14:20:11.3304356Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-18T14:20:11.3305262Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-18T14:20:11.3306212Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-18T14:20:11.3307076Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-18T14:20:11.3307993Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-18T14:20:11.3308892Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-18T14:20:11.3309755Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-18T14:20:11.3310731Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-18T14:20:11.3312423Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-18T14:20:11.3313260Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-18T14:20:11.3313995Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-18T14:20:11.3314693Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-18T14:20:11.3315422Z whisker (NA -> 0.4 ) [CRAN] 2021-05-18T14:20:11.3316410Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-18T14:20:11.3317153Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-18T14:20:11.3317902Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-18T14:20:11.3318636Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-18T14:20:11.3319336Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-18T14:20:11.3320048Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-18T14:20:11.3320758Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-18T14:20:11.3321474Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-18T14:20:11.3322207Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-18T14:20:11.3322945Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-18T14:20:11.3323659Z git2r (NA -> 0.28.0) [CRAN] 2021-05-18T14:20:11.3379888Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-18T14:20:11.3387816Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:20:11.3388763Z (as ‘lib’ is unspecified) 2021-05-18T14:20:24.8812912Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-18T14:20:25.1467584Z Content type 'binary/octet-stream' length 859995 bytes (839 KB) 2021-05-18T14:20:25.1731800Z ================================================== 2021-05-18T14:20:25.1732697Z downloaded 839 KB 2021-05-18T14:20:25.1733490Z 2021-05-18T14:20:25.1762145Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-18T14:20:25.4437328Z Content type 'binary/octet-stream' length 264532 bytes (258 KB) 2021-05-18T14:20:25.4602709Z ================================================== 2021-05-18T14:20:25.4603739Z downloaded 258 KB 2021-05-18T14:20:25.4604261Z 2021-05-18T14:20:25.4640201Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-18T14:20:25.7277568Z Content type 'binary/octet-stream' length 100043 bytes (97 KB) 2021-05-18T14:20:25.7384396Z ================================================== 2021-05-18T14:20:25.7385200Z downloaded 97 KB 2021-05-18T14:20:25.7385727Z 2021-05-18T14:20:25.7416797Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-18T14:20:26.0097653Z Content type 'binary/octet-stream' length 20291 bytes (19 KB) 2021-05-18T14:20:26.0098919Z ================================================== 2021-05-18T14:20:26.0099748Z downloaded 19 KB 2021-05-18T14:20:26.0100344Z 2021-05-18T14:20:26.0131285Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-18T14:20:26.1932366Z Content type 'application/x-tar' length 5688 bytes 2021-05-18T14:20:26.1935449Z ================================================== 2021-05-18T14:20:26.1935969Z downloaded 5688 bytes 2021-05-18T14:20:26.1936926Z 2021-05-18T14:20:26.1968834Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-18T14:20:26.4745332Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB) 2021-05-18T14:20:26.5056112Z ================================================== 2021-05-18T14:20:26.5056591Z downloaded 1.3 MB 2021-05-18T14:20:26.5056882Z 2021-05-18T14:20:26.5086798Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-18T14:20:26.7716485Z Content type 'binary/octet-stream' length 12958 bytes (12 KB) 2021-05-18T14:20:26.7717671Z ================================================== 2021-05-18T14:20:26.7718681Z downloaded 12 KB 2021-05-18T14:20:26.7718995Z 2021-05-18T14:20:26.7746528Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-18T14:20:26.9407052Z Content type 'binary/octet-stream' length 798588 bytes (779 KB) 2021-05-18T14:20:26.9710151Z ================================================== 2021-05-18T14:20:26.9710954Z downloaded 779 KB 2021-05-18T14:20:26.9711416Z 2021-05-18T14:20:26.9738365Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-18T14:20:27.1708154Z Content type 'binary/octet-stream' length 422264 bytes (412 KB) 2021-05-18T14:20:27.1917674Z ================================================== 2021-05-18T14:20:27.1919861Z downloaded 412 KB 2021-05-18T14:20:27.1920645Z 2021-05-18T14:20:27.1955385Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-18T14:20:27.4628140Z Content type 'application/x-tar' length 3475 bytes 2021-05-18T14:20:27.4633238Z ================================================== 2021-05-18T14:20:27.4633755Z downloaded 3475 bytes 2021-05-18T14:20:27.4634078Z 2021-05-18T14:20:27.4663276Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-18T14:20:27.6320970Z Content type 'binary/octet-stream' length 159877 bytes (156 KB) 2021-05-18T14:20:27.6442479Z ================================================== 2021-05-18T14:20:27.6444175Z downloaded 156 KB 2021-05-18T14:20:27.6444632Z 2021-05-18T14:20:27.6471069Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-18T14:20:27.9131151Z Content type 'binary/octet-stream' length 62129 bytes (60 KB) 2021-05-18T14:20:27.9189611Z ================================================== 2021-05-18T14:20:27.9190116Z downloaded 60 KB 2021-05-18T14:20:27.9190410Z 2021-05-18T14:20:27.9220727Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-18T14:20:28.0934436Z Content type 'binary/octet-stream' length 158132 bytes (154 KB) 2021-05-18T14:20:28.1058089Z ================================================== 2021-05-18T14:20:28.1060458Z downloaded 154 KB 2021-05-18T14:20:28.1061797Z 2021-05-18T14:20:28.1091002Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-18T14:20:28.3893371Z Content type 'binary/octet-stream' length 113091 bytes (110 KB) 2021-05-18T14:20:28.4996348Z ================================================== 2021-05-18T14:20:28.4998663Z downloaded 110 KB 2021-05-18T14:20:28.5002083Z 2021-05-18T14:20:28.5033942Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-18T14:20:28.6694573Z Content type 'binary/octet-stream' length 109870 bytes (107 KB) 2021-05-18T14:20:28.6800465Z ================================================== 2021-05-18T14:20:28.6801035Z downloaded 107 KB 2021-05-18T14:20:28.6801345Z 2021-05-18T14:20:28.6834152Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-18T14:20:28.9476257Z Content type 'binary/octet-stream' length 230676 bytes (225 KB) 2021-05-18T14:20:28.9643601Z ================================================== 2021-05-18T14:20:28.9644356Z downloaded 225 KB 2021-05-18T14:20:28.9644801Z 2021-05-18T14:20:28.9674069Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-18T14:20:29.2451499Z Content type 'binary/octet-stream' length 44517 bytes (43 KB) 2021-05-18T14:20:29.2499754Z ================================================== 2021-05-18T14:20:29.2500521Z downloaded 43 KB 2021-05-18T14:20:29.2500998Z 2021-05-18T14:20:29.2531599Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-18T14:20:29.6360230Z Content type 'binary/octet-stream' length 92979 bytes (90 KB) 2021-05-18T14:20:29.6459256Z ================================================== 2021-05-18T14:20:29.6459763Z downloaded 90 KB 2021-05-18T14:20:29.6460031Z 2021-05-18T14:20:29.6493107Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-18T14:20:30.0373194Z Content type 'binary/octet-stream' length 95150 bytes (92 KB) 2021-05-18T14:20:30.0443944Z ================================================== 2021-05-18T14:20:30.0445301Z downloaded 92 KB 2021-05-18T14:20:30.0446084Z 2021-05-18T14:20:30.0574270Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-18T14:20:30.2266349Z Content type 'application/x-tar' length 28675 bytes (28 KB) 2021-05-18T14:20:30.2284224Z ================================================== 2021-05-18T14:20:30.2284796Z downloaded 28 KB 2021-05-18T14:20:30.2285073Z 2021-05-18T14:20:30.2319851Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-18T14:20:30.3978148Z Content type 'binary/octet-stream' length 12326 bytes (12 KB) 2021-05-18T14:20:30.3979355Z ================================================== 2021-05-18T14:20:30.3980045Z downloaded 12 KB 2021-05-18T14:20:30.3980552Z 2021-05-18T14:20:30.4003050Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-18T14:20:30.5641763Z Content type 'binary/octet-stream' length 373001 bytes (364 KB) 2021-05-18T14:20:30.5828310Z ================================================== 2021-05-18T14:20:30.5828858Z downloaded 364 KB 2021-05-18T14:20:30.5829190Z 2021-05-18T14:20:30.5860528Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-18T14:20:30.8569183Z Content type 'binary/octet-stream' length 83493 bytes (81 KB) 2021-05-18T14:20:30.8636355Z ================================================== 2021-05-18T14:20:30.8637559Z downloaded 81 KB 2021-05-18T14:20:30.8637866Z 2021-05-18T14:20:30.8671999Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-18T14:20:31.1488307Z Content type 'binary/octet-stream' length 45853 bytes (44 KB) 2021-05-18T14:20:31.1537023Z ================================================== 2021-05-18T14:20:31.1537566Z downloaded 44 KB 2021-05-18T14:20:31.1537876Z 2021-05-18T14:20:31.1570648Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-18T14:20:31.4223922Z Content type 'binary/octet-stream' length 66528 bytes (64 KB) 2021-05-18T14:20:31.4281859Z ================================================== 2021-05-18T14:20:31.4282363Z downloaded 64 KB 2021-05-18T14:20:31.4282649Z 2021-05-18T14:20:31.4311491Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-18T14:20:31.6175399Z Content type 'binary/octet-stream' length 800044 bytes (781 KB) 2021-05-18T14:20:31.6438082Z ================================================== 2021-05-18T14:20:31.6438961Z downloaded 781 KB 2021-05-18T14:20:31.6439509Z 2021-05-18T14:20:31.6468694Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-18T14:20:31.9206302Z Content type 'binary/octet-stream' length 20919 bytes (20 KB) 2021-05-18T14:20:31.9209015Z ================================================== 2021-05-18T14:20:31.9209868Z downloaded 20 KB 2021-05-18T14:20:31.9210383Z 2021-05-18T14:20:31.9237998Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cachem_1.0.5.tar.gz' 2021-05-18T14:20:32.1895774Z Content type 'binary/octet-stream' length 24954 bytes (24 KB) 2021-05-18T14:20:32.1898594Z ================================================== 2021-05-18T14:20:32.1899055Z downloaded 24 KB 2021-05-18T14:20:32.1899327Z 2021-05-18T14:20:32.1931407Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-18T14:20:32.3648362Z Content type 'binary/octet-stream' length 304209 bytes (297 KB) 2021-05-18T14:20:32.3836070Z ================================================== 2021-05-18T14:20:32.3836991Z downloaded 297 KB 2021-05-18T14:20:32.3837526Z 2021-05-18T14:20:32.3872665Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-18T14:20:32.6543534Z Content type 'binary/octet-stream' length 17411 bytes (17 KB) 2021-05-18T14:20:32.6544594Z ================================================== 2021-05-18T14:20:32.6545215Z downloaded 17 KB 2021-05-18T14:20:32.6545675Z 2021-05-18T14:20:32.6571472Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-18T14:20:32.8434621Z Content type 'binary/octet-stream' length 1223574 bytes (1.2 MB) 2021-05-18T14:20:32.8725724Z ================================================== 2021-05-18T14:20:32.8726554Z downloaded 1.2 MB 2021-05-18T14:20:32.8727006Z 2021-05-18T14:20:33.3339265Z * installing *source* package ‘rlang’ ... 2021-05-18T14:20:33.3462608Z ** package ‘rlang’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:33.3463712Z ** using staged installation 2021-05-18T14:20:33.3630618Z ** libs 2021-05-18T14:20:33.3949636Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o 2021-05-18T14:20:34.3452185Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o 2021-05-18T14:20:34.7247005Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o 2021-05-18T14:20:36.9540435Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o 2021-05-18T14:20:37.8742413Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-18T14:20:37.9103811Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:20:38.1860449Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs 2021-05-18T14:20:38.1885277Z ** R 2021-05-18T14:20:38.2311561Z ** inst 2021-05-18T14:20:38.2319131Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:41.1796933Z ** help 2021-05-18T14:20:41.7924209Z *** installing help indices 2021-05-18T14:20:42.0559804Z *** copying figures 2021-05-18T14:20:42.0564721Z ** building package indices 2021-05-18T14:20:42.4870856Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:42.6999393Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:20:42.8169961Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:43.0575483Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:43.0607485Z * DONE (rlang) 2021-05-18T14:20:43.2993953Z * installing *source* package ‘magrittr’ ... 2021-05-18T14:20:43.3018465Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:43.3019699Z ** using staged installation 2021-05-18T14:20:43.3135328Z ** libs 2021-05-18T14:20:43.3180434Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o 2021-05-18T14:20:43.4347974Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:20:43.4842541Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:20:43.5077630Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs 2021-05-18T14:20:43.5078765Z ** R 2021-05-18T14:20:43.5099300Z ** inst 2021-05-18T14:20:43.5112461Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:43.7728900Z ** help 2021-05-18T14:20:43.8109488Z *** installing help indices 2021-05-18T14:20:43.8387231Z *** copying figures 2021-05-18T14:20:43.8390254Z ** building package indices 2021-05-18T14:20:44.0301565Z ** installing vignettes 2021-05-18T14:20:44.0362596Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:44.2021574Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:20:44.2189596Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:44.3803575Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:44.3810759Z * DONE (magrittr) 2021-05-18T14:20:44.6094990Z * installing *source* package ‘glue’ ... 2021-05-18T14:20:44.6113454Z ** package ‘glue’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:44.6114643Z ** using staged installation 2021-05-18T14:20:44.6258038Z ** libs 2021-05-18T14:20:44.6307796Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o 2021-05-18T14:20:44.7428126Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:20:44.7842189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o 2021-05-18T14:20:44.8615687Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:20:44.8837813Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs 2021-05-18T14:20:44.8839028Z ** R 2021-05-18T14:20:44.8884197Z ** inst 2021-05-18T14:20:44.8894881Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:45.3488355Z ** help 2021-05-18T14:20:45.3764839Z *** installing help indices 2021-05-18T14:20:45.4040620Z *** copying figures 2021-05-18T14:20:45.4043472Z ** building package indices 2021-05-18T14:20:45.5878149Z ** installing vignettes 2021-05-18T14:20:45.5932892Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:45.7969800Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:20:45.8136664Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:46.0179869Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:46.0186740Z * DONE (glue) 2021-05-18T14:20:46.2220440Z * installing *source* package ‘sys’ ... 2021-05-18T14:20:46.2232085Z ** package ‘sys’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:46.2233122Z ** using staged installation 2021-05-18T14:20:46.2413827Z ** libs 2021-05-18T14:20:46.2459332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o 2021-05-18T14:20:46.6227189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:20:46.6652882Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:20:46.6877550Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs 2021-05-18T14:20:46.6878675Z ** R 2021-05-18T14:20:46.6907478Z ** inst 2021-05-18T14:20:46.6915188Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:46.9456001Z ** help 2021-05-18T14:20:46.9646834Z *** installing help indices 2021-05-18T14:20:46.9827931Z ** building package indices 2021-05-18T14:20:47.1654781Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:47.3301922Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:20:47.3468596Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:47.5064322Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:47.5070394Z * DONE (sys) 2021-05-18T14:20:47.6977888Z * installing *source* package ‘mime’ ... 2021-05-18T14:20:47.6985903Z ** package ‘mime’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:47.6986964Z ** using staged installation 2021-05-18T14:20:47.7110774Z ** libs 2021-05-18T14:20:47.7158606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:20:47.7590133Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o 2021-05-18T14:20:47.8104893Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:20:47.8246020Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs 2021-05-18T14:20:47.8260199Z ** R 2021-05-18T14:20:47.8311424Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:48.1277857Z ** help 2021-05-18T14:20:48.1470399Z *** installing help indices 2021-05-18T14:20:48.1615459Z ** building package indices 2021-05-18T14:20:48.3671168Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:48.5509335Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:20:48.5675026Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:48.7316220Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:48.7322490Z * DONE (mime) 2021-05-18T14:20:49.0594791Z * installing *source* package ‘curl’ ... 2021-05-18T14:20:49.0670486Z ** package ‘curl’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:49.0671870Z ** using staged installation 2021-05-18T14:20:49.0813388Z Found pkg-config cflags and libs! 2021-05-18T14:20:49.1621594Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu 2021-05-18T14:20:49.1622791Z Using PKG_LIBS=-lcurl 2021-05-18T14:20:49.2199095Z ** libs 2021-05-18T14:20:49.2231973Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o 2021-05-18T14:20:49.2256332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o 2021-05-18T14:20:49.2961375Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o 2021-05-18T14:20:49.4144238Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o 2021-05-18T14:20:49.4948491Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o 2021-05-18T14:20:49.5468131Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o 2021-05-18T14:20:49.6442282Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o 2021-05-18T14:20:49.7112076Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o 2021-05-18T14:20:49.7613357Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o 2021-05-18T14:20:50.0720503Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o 2021-05-18T14:20:50.1083635Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:20:50.1604716Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o 2021-05-18T14:20:50.2211708Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o 2021-05-18T14:20:50.3849243Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o 2021-05-18T14:20:50.4670130Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o 2021-05-18T14:20:50.5183900Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-18T14:20:50.5588575Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-18T14:20:50.6021144Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o 2021-05-18T14:20:50.6533587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:20:50.7663456Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-18T14:20:50.8290236Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o 2021-05-18T14:20:50.8468445Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o 2021-05-18T14:20:50.8942385Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:20:50.9272814Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs 2021-05-18T14:20:50.9274191Z ** R 2021-05-18T14:20:50.9359701Z ** inst 2021-05-18T14:20:50.9392147Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:51.4003289Z ** help 2021-05-18T14:20:51.4447791Z *** installing help indices 2021-05-18T14:20:51.4759172Z ** building package indices 2021-05-18T14:20:51.6692408Z ** installing vignettes 2021-05-18T14:20:51.6763738Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:51.8507950Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:20:51.8678971Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:52.0484830Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:52.0494306Z * DONE (curl) 2021-05-18T14:20:52.3543403Z * installing *source* package ‘jsonlite’ ... 2021-05-18T14:20:52.3596203Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:52.3597190Z ** using staged installation 2021-05-18T14:20:52.3727148Z ** libs 2021-05-18T14:20:52.3778961Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:20:52.4419501Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o 2021-05-18T14:20:52.4947694Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o 2021-05-18T14:20:52.5541281Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o 2021-05-18T14:20:52.6594770Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o 2021-05-18T14:20:52.7239567Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o 2021-05-18T14:20:52.7686078Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o 2021-05-18T14:20:52.8126783Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o 2021-05-18T14:20:52.8629035Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o 2021-05-18T14:20:52.9085932Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o 2021-05-18T14:20:53.0306139Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o 2021-05-18T14:20:53.0933927Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o 2021-05-18T14:20:53.1709073Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o 2021-05-18T14:20:53.2380952Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o 2021-05-18T14:20:53.3034771Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o 2021-05-18T14:20:53.3562394Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o 2021-05-18T14:20:53.4069654Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o 2021-05-18T14:20:53.4487219Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o 2021-05-18T14:20:53.5098585Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o 2021-05-18T14:20:53.5568521Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o 2021-05-18T14:20:53.6033281Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o 2021-05-18T14:20:53.6652675Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o 2021-05-18T14:20:53.6934618Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o 2021-05-18T14:20:53.7383686Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o 2021-05-18T14:20:53.8304062Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o 2021-05-18T14:20:54.0552891Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o 2021-05-18T14:20:54.3008793Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o 2021-05-18T14:20:54.4601393Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o 2021-05-18T14:20:54.5911382Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o 2021-05-18T14:20:54.6256690Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:20:54.6598594Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs 2021-05-18T14:20:54.6599919Z ** R 2021-05-18T14:20:54.6752312Z ** inst 2021-05-18T14:20:54.6767991Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:55.6349614Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” 2021-05-18T14:20:55.6351501Z ** help 2021-05-18T14:20:55.6646007Z *** installing help indices 2021-05-18T14:20:55.6894224Z ** building package indices 2021-05-18T14:20:55.8747492Z ** installing vignettes 2021-05-18T14:20:55.8812966Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:56.0600802Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:20:56.0806965Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:56.2704127Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:56.2717721Z * DONE (jsonlite) 2021-05-18T14:20:56.4624296Z * installing *source* package ‘ini’ ... 2021-05-18T14:20:56.4631260Z ** package ‘ini’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:56.4632305Z ** using staged installation 2021-05-18T14:20:56.4733331Z ** R 2021-05-18T14:20:56.4759011Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:56.6958209Z ** help 2021-05-18T14:20:56.7074068Z *** installing help indices 2021-05-18T14:20:56.7286062Z ** building package indices 2021-05-18T14:20:56.9037587Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:57.0651714Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:57.2247613Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:57.2252272Z * DONE (ini) 2021-05-18T14:20:57.4432119Z * installing *source* package ‘gitcreds’ ... 2021-05-18T14:20:57.4449765Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:57.4450877Z ** using staged installation 2021-05-18T14:20:57.4550220Z ** R 2021-05-18T14:20:57.4604939Z ** inst 2021-05-18T14:20:57.4615046Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:57.8998552Z ** help 2021-05-18T14:20:57.9245919Z *** installing help indices 2021-05-18T14:20:57.9459769Z ** building package indices 2021-05-18T14:20:58.1259611Z ** installing vignettes 2021-05-18T14:20:58.1309745Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:58.2918750Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:58.4571380Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:58.4578915Z * DONE (gitcreds) 2021-05-18T14:20:58.6894192Z * installing *source* package ‘zip’ ... 2021-05-18T14:20:58.6918815Z ** package ‘zip’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:58.6920251Z ** using staged installation 2021-05-18T14:20:58.7017227Z ** libs 2021-05-18T14:20:58.7067460Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip 2021-05-18T14:21:01.2762467Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip 2021-05-18T14:21:03.8123241Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:03.8536443Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o 2021-05-18T14:21:06.1709461Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o 2021-05-18T14:21:06.2594667Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o 2021-05-18T14:21:06.3833251Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o 2021-05-18T14:21:06.4415948Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:06.4662238Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip 2021-05-18T14:21:06.4710952Z ** R 2021-05-18T14:21:06.4747844Z ** inst 2021-05-18T14:21:06.4757183Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:06.7747721Z ** help 2021-05-18T14:21:06.7946227Z *** installing help indices 2021-05-18T14:21:06.8168861Z ** building package indices 2021-05-18T14:21:06.9991198Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:07.1695550Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:07.1872340Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:07.3543586Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:07.3550729Z * DONE (zip) 2021-05-18T14:21:07.6290653Z * installing *source* package ‘rstudioapi’ ... 2021-05-18T14:21:07.6327890Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:07.6329092Z ** using staged installation 2021-05-18T14:21:07.6444464Z ** R 2021-05-18T14:21:07.6540141Z ** inst 2021-05-18T14:21:07.6556816Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:08.1276798Z ** help 2021-05-18T14:21:08.2828010Z *** installing help indices 2021-05-18T14:21:08.3865870Z *** copying figures 2021-05-18T14:21:08.3868355Z ** building package indices 2021-05-18T14:21:08.6556899Z ** installing vignettes 2021-05-18T14:21:08.6610414Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:08.8262249Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:08.9935580Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:08.9944188Z * DONE (rstudioapi) 2021-05-18T14:21:09.2043398Z * installing *source* package ‘fastmap’ ... 2021-05-18T14:21:09.2058711Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:09.2059875Z ** using staged installation 2021-05-18T14:21:09.2211396Z ** libs 2021-05-18T14:21:09.2261704Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o 2021-05-18T14:21:13.7876956Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:13.8320327Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:13.8925551Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs 2021-05-18T14:21:13.8945982Z ** R 2021-05-18T14:21:13.8991591Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:14.2846069Z ** help 2021-05-18T14:21:14.3011499Z *** installing help indices 2021-05-18T14:21:14.3186622Z ** building package indices 2021-05-18T14:21:14.5000296Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:14.6698048Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:14.6873725Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:14.8548888Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:14.8550040Z * DONE (fastmap) 2021-05-18T14:21:15.0838903Z * installing *source* package ‘yaml’ ... 2021-05-18T14:21:15.0862913Z ** package ‘yaml’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:15.0864014Z ** using staged installation 2021-05-18T14:21:15.0951438Z ** libs 2021-05-18T14:21:15.1002765Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o 2021-05-18T14:21:15.4134941Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o 2021-05-18T14:21:15.5180084Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o 2021-05-18T14:21:16.3878065Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o 2021-05-18T14:21:16.5397954Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o 2021-05-18T14:21:16.6601655Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o 2021-05-18T14:21:16.9921804Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o 2021-05-18T14:21:17.2640524Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o 2021-05-18T14:21:17.3618024Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o 2021-05-18T14:21:17.7486133Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o 2021-05-18T14:21:17.8499642Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o 2021-05-18T14:21:19.0844474Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o 2021-05-18T14:21:19.1411307Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:19.1691250Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs 2021-05-18T14:21:19.1709720Z ** R 2021-05-18T14:21:19.1736551Z ** inst 2021-05-18T14:21:19.1748935Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:19.4006364Z ** help 2021-05-18T14:21:19.4203334Z *** installing help indices 2021-05-18T14:21:19.4427492Z ** building package indices 2021-05-18T14:21:19.6236713Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:19.7906906Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:19.8081298Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:19.9713311Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:19.9714219Z * DONE (yaml) 2021-05-18T14:21:20.2111060Z * installing *source* package ‘withr’ ... 2021-05-18T14:21:20.2135732Z ** package ‘withr’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:20.2136986Z ** using staged installation 2021-05-18T14:21:20.2279861Z ** R 2021-05-18T14:21:20.2358550Z ** inst 2021-05-18T14:21:20.2367392Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:20.8116889Z ** help 2021-05-18T14:21:20.8815247Z *** installing help indices 2021-05-18T14:21:20.9317682Z *** copying figures 2021-05-18T14:21:20.9320177Z ** building package indices 2021-05-18T14:21:21.1473216Z ** installing vignettes 2021-05-18T14:21:21.1536661Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:21.3166015Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:21.4861592Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:21.4870554Z * DONE (withr) 2021-05-18T14:21:21.7015896Z * installing *source* package ‘whisker’ ... 2021-05-18T14:21:21.7032203Z ** package ‘whisker’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:21.7033467Z ** using staged installation 2021-05-18T14:21:21.7119137Z ** R 2021-05-18T14:21:21.7157342Z ** inst 2021-05-18T14:21:21.7173806Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:22.0789681Z ** help 2021-05-18T14:21:22.0990372Z *** installing help indices 2021-05-18T14:21:22.1204252Z ** building package indices 2021-05-18T14:21:22.3050688Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:22.4661713Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:22.6294528Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:22.6303042Z * DONE (whisker) 2021-05-18T14:21:22.8304915Z * installing *source* package ‘rappdirs’ ... 2021-05-18T14:21:22.8315398Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:22.8316832Z ** using staged installation 2021-05-18T14:21:22.8517671Z ** libs 2021-05-18T14:21:22.8563488Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:22.8990994Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o 2021-05-18T14:21:22.9415182Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:22.9557975Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs 2021-05-18T14:21:22.9569669Z ** R 2021-05-18T14:21:22.9607687Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:23.2354504Z ** help 2021-05-18T14:21:23.2579944Z *** installing help indices 2021-05-18T14:21:23.2778931Z ** building package indices 2021-05-18T14:21:23.4613851Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:23.6290190Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:23.6455704Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:23.8080880Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:23.8087382Z * DONE (rappdirs) 2021-05-18T14:21:24.2507301Z * installing *source* package ‘fs’ ... 2021-05-18T14:21:24.2632750Z ** package ‘fs’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:24.2633963Z ** using staged installation 2021-05-18T14:21:24.2780738Z ** libs 2021-05-18T14:21:24.2840047Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o 2021-05-18T14:21:24.8931408Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o 2021-05-18T14:21:25.2832244Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o 2021-05-18T14:21:25.6537098Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o 2021-05-18T14:21:25.7294561Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o 2021-05-18T14:21:26.0077686Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o 2021-05-18T14:21:26.2902922Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o 2021-05-18T14:21:26.3731035Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o 2021-05-18T14:21:26.7736253Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o 2021-05-18T14:21:27.0369683Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o 2021-05-18T14:21:27.1318815Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o 2021-05-18T14:21:27.4181020Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o 2021-05-18T14:21:27.5357333Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o 2021-05-18T14:21:27.5752734Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o 2021-05-18T14:21:27.6037482Z (cd libuv-1.38.1 \ 2021-05-18T14:21:27.6039012Z && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) 2021-05-18T14:21:32.2359795Z make --directory=libuv-1.38.1 \ 2021-05-18T14:21:32.2360658Z HAVE_DTRACE=0 2021-05-18T14:21:32.2453119Z make[1]: Entering directory '/tmp/Rtmpp2u9V9/R.INSTALL799b52f3b158/fs/src/libuv-1.38.1' 2021-05-18T14:21:32.2545886Z CC src/libuv_la-fs-poll.lo 2021-05-18T14:21:32.8366558Z CC src/libuv_la-idna.lo 2021-05-18T14:21:33.4296787Z CC src/libuv_la-inet.lo 2021-05-18T14:21:34.0429505Z CC src/libuv_la-random.lo 2021-05-18T14:21:34.5444954Z CC src/libuv_la-strscpy.lo 2021-05-18T14:21:35.0070672Z CC src/libuv_la-threadpool.lo 2021-05-18T14:21:35.6290967Z CC src/libuv_la-timer.lo 2021-05-18T14:21:36.2164834Z CC src/libuv_la-uv-data-getter-setters.lo 2021-05-18T14:21:36.7170201Z CC src/libuv_la-uv-common.lo 2021-05-18T14:21:37.7734579Z CC src/libuv_la-version.lo 2021-05-18T14:21:38.2307467Z CC src/unix/libuv_la-async.lo 2021-05-18T14:21:38.8160347Z CC src/unix/libuv_la-core.lo 2021-05-18T14:21:39.9448229Z CC src/unix/libuv_la-dl.lo 2021-05-18T14:21:40.4394129Z CC src/unix/libuv_la-fs.lo 2021-05-18T14:21:41.8611182Z CC src/unix/libuv_la-getaddrinfo.lo 2021-05-18T14:21:42.4253260Z CC src/unix/libuv_la-getnameinfo.lo 2021-05-18T14:21:42.9293772Z CC src/unix/libuv_la-loop-watcher.lo 2021-05-18T14:21:43.4999278Z CC src/unix/libuv_la-loop.lo 2021-05-18T14:21:44.0573753Z CC src/unix/libuv_la-pipe.lo 2021-05-18T14:21:44.6670728Z CC src/unix/libuv_la-poll.lo 2021-05-18T14:21:45.2050989Z CC src/unix/libuv_la-process.lo 2021-05-18T14:21:45.9361005Z CC src/unix/libuv_la-random-devurandom.lo 2021-05-18T14:21:46.4440709Z CC src/unix/libuv_la-signal.lo 2021-05-18T14:21:47.3003853Z CC src/unix/libuv_la-stream.lo 2021-05-18T14:21:48.3047013Z CC src/unix/libuv_la-tcp.lo 2021-05-18T14:21:48.9353840Z CC src/unix/libuv_la-thread.lo 2021-05-18T14:21:49.6243768Z CC src/unix/libuv_la-tty.lo 2021-05-18T14:21:50.2057925Z CC src/unix/libuv_la-udp.lo 2021-05-18T14:21:51.1889333Z CC src/unix/libuv_la-linux-core.lo 2021-05-18T14:21:52.2478483Z CC src/unix/libuv_la-linux-inotify.lo 2021-05-18T14:21:53.0358060Z CC src/unix/libuv_la-linux-syscalls.lo 2021-05-18T14:21:53.4777971Z CC src/unix/libuv_la-procfs-exepath.lo 2021-05-18T14:21:53.9681775Z CC src/unix/libuv_la-proctitle.lo 2021-05-18T14:21:54.4944202Z CC src/unix/libuv_la-random-getrandom.lo 2021-05-18T14:21:54.9742682Z CC src/unix/libuv_la-random-sysctl-linux.lo 2021-05-18T14:21:55.4735575Z CCLD libuv.la 2021-05-18T14:21:55.6658283Z ar: `u' modifier ignored since `D' is the default (see `U') 2021-05-18T14:21:55.7171358Z make[1]: Leaving directory '/tmp/Rtmpp2u9V9/R.INSTALL799b52f3b158/fs/src/libuv-1.38.1' 2021-05-18T14:21:55.7191758Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o path.o fs.o link.o utils.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:55.8012637Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs 2021-05-18T14:21:55.8041061Z ** R 2021-05-18T14:21:55.8135356Z ** inst 2021-05-18T14:21:55.8145027Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:56.7102109Z ** help 2021-05-18T14:21:56.7751314Z *** installing help indices 2021-05-18T14:21:56.8209705Z ** building package indices 2021-05-18T14:21:57.0334325Z ** installing vignettes 2021-05-18T14:21:57.0433043Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:57.2546544Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:57.2759083Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:57.4954011Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:57.4964739Z * DONE (fs) 2021-05-18T14:21:57.7106403Z * installing *source* package ‘clipr’ ... 2021-05-18T14:21:57.7119080Z ** package ‘clipr’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:57.7120147Z ** using staged installation 2021-05-18T14:21:57.7305011Z ** R 2021-05-18T14:21:57.7342644Z ** inst 2021-05-18T14:21:57.7351338Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:58.0315644Z ** help 2021-05-18T14:21:58.0512690Z *** installing help indices 2021-05-18T14:21:58.0709503Z ** building package indices 2021-05-18T14:21:58.2557023Z ** installing vignettes 2021-05-18T14:21:58.2559062Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:58.4186380Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:58.5823919Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:58.5830116Z * DONE (clipr) 2021-05-18T14:21:59.2546697Z * installing *source* package ‘git2r’ ... 2021-05-18T14:21:59.2774381Z ** package ‘git2r’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:59.2776066Z ** using staged installation 2021-05-18T14:21:59.4447993Z checking build system type... x86_64-unknown-linux-gnu 2021-05-18T14:21:59.4449352Z checking host system type... x86_64-unknown-linux-gnu 2021-05-18T14:21:59.4471121Z checking for gcc... gcc 2021-05-18T14:21:59.5022033Z checking whether the C compiler works... yes 2021-05-18T14:21:59.5023127Z checking for C compiler default output file name... a.out 2021-05-18T14:21:59.5354732Z checking for suffix of executables... 2021-05-18T14:21:59.5734853Z checking whether we are cross compiling... no 2021-05-18T14:21:59.5946247Z checking for suffix of object files... o 2021-05-18T14:21:59.6133593Z checking whether we are using the GNU C compiler... yes 2021-05-18T14:21:59.6322013Z checking whether gcc accepts -g... yes 2021-05-18T14:21:59.6656801Z checking for gcc option to accept ISO C89... none needed 2021-05-18T14:21:59.6658344Z checking for pkg-config... /usr/bin/pkg-config 2021-05-18T14:21:59.6672187Z checking pkg-config is at least version 0.9.0... yes 2021-05-18T14:21:59.6792339Z Found pkg-config cflags and libs! 2021-05-18T14:21:59.7666673Z checking whether the libgit2 version will work in git2r... yes 2021-05-18T14:21:59.8823419Z checking whether the libgit2 function git_buf_dispose is available... yes 2021-05-18T14:21:59.9962120Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes 2021-05-18T14:22:00.1101285Z checking whether the libgit2 function git_error_last is available... yes 2021-05-18T14:22:00.2077034Z checking whether the libgit2 function git_oid_is_zero is available... no 2021-05-18T14:22:00.2078617Z ----- Results of the git2r package configure ----- 2021-05-18T14:22:00.2079101Z 2021-05-18T14:22:00.2079997Z PKG_CFLAGS: -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR 2021-05-18T14:22:00.2080861Z PKG_LIBS: -lgit2 2021-05-18T14:22:00.2081217Z 2021-05-18T14:22:00.2081881Z -------------------------------------------------- 2021-05-18T14:22:00.2266763Z configure: creating ./config.status 2021-05-18T14:22:00.2976146Z config.status: creating src/Makevars 2021-05-18T14:22:00.3490502Z ** libs 2021-05-18T14:22:00.3546727Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r.c -o git2r.o 2021-05-18T14:22:00.4167143Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_S3.c -o git2r_S3.o 2021-05-18T14:22:00.4643400Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o 2021-05-18T14:22:00.6084811Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o 2021-05-18T14:22:00.6935512Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o 2021-05-18T14:22:00.8068947Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o 2021-05-18T14:22:01.0188072Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o 2021-05-18T14:22:01.1026536Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o 2021-05-18T14:22:01.1847251Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o 2021-05-18T14:22:01.3248228Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_config.c -o git2r_config.o 2021-05-18T14:22:01.4706430Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o 2021-05-18T14:22:01.5548648Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o 2021-05-18T14:22:01.7865339Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_error.c -o git2r_error.o 2021-05-18T14:22:01.8462057Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o 2021-05-18T14:22:01.9222468Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_index.c -o git2r_index.o 2021-05-18T14:22:02.0003588Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o 2021-05-18T14:22:02.0736641Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o 2021-05-18T14:22:02.2359053Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_note.c -o git2r_note.o 2021-05-18T14:22:02.3548254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_object.c -o git2r_object.o 2021-05-18T14:22:02.4301565Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o 2021-05-18T14:22:02.5779686Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o 2021-05-18T14:22:02.6317563Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_push.c -o git2r_push.o 2021-05-18T14:22:02.7011325Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o 2021-05-18T14:22:02.7798291Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o 2021-05-18T14:22:02.8489589Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o 2021-05-18T14:22:03.0073731Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o 2021-05-18T14:22:03.1491772Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o 2021-05-18T14:22:03.2175518Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o 2021-05-18T14:22:03.2839301Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o 2021-05-18T14:22:03.4315671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o 2021-05-18T14:22:03.5034314Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o 2021-05-18T14:22:03.5989186Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_status.c -o git2r_status.o 2021-05-18T14:22:03.7318786Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o 2021-05-18T14:22:03.8490942Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o 2021-05-18T14:22:03.9090247Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o 2021-05-18T14:22:04.0065742Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:04.0409581Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs 2021-05-18T14:22:04.0427074Z ** R 2021-05-18T14:22:04.0591019Z ** inst 2021-05-18T14:22:04.0599098Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:04.8473948Z ** help 2021-05-18T14:22:05.0671072Z *** installing help indices 2021-05-18T14:22:05.2306684Z ** building package indices 2021-05-18T14:22:05.5101273Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:05.6858805Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:05.7025476Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:05.8698966Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:05.8728293Z * DONE (git2r) 2021-05-18T14:22:06.0600147Z * installing *source* package ‘askpass’ ... 2021-05-18T14:22:06.0608079Z ** package ‘askpass’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:06.0608994Z ** using staged installation 2021-05-18T14:22:06.0725545Z ** libs 2021-05-18T14:22:06.0767338Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o 2021-05-18T14:22:06.1246474Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:06.1427643Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs 2021-05-18T14:22:06.1440048Z ** R 2021-05-18T14:22:06.1464049Z ** inst 2021-05-18T14:22:06.1471027Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:06.3588871Z ** help 2021-05-18T14:22:06.3755253Z *** installing help indices 2021-05-18T14:22:06.3890302Z ** building package indices 2021-05-18T14:22:06.5653137Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:06.7144716Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:06.7301114Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:06.8894146Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:06.8899731Z * DONE (askpass) 2021-05-18T14:22:07.2015350Z * installing *source* package ‘cli’ ... 2021-05-18T14:22:07.2069823Z ** package ‘cli’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:07.2071012Z ** using staged installation 2021-05-18T14:22:07.2244653Z ** R 2021-05-18T14:22:07.2497252Z ** inst 2021-05-18T14:22:07.2508889Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:09.3367316Z ** help 2021-05-18T14:22:09.4978330Z *** installing help indices 2021-05-18T14:22:09.5989355Z *** copying figures 2021-05-18T14:22:09.5990648Z ** building package indices 2021-05-18T14:22:09.8820992Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:10.0671176Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:10.2918232Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:10.2943457Z * DONE (cli) 2021-05-18T14:22:10.5918679Z * installing *source* package ‘purrr’ ... 2021-05-18T14:22:10.5967354Z ** package ‘purrr’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:10.5968559Z ** using staged installation 2021-05-18T14:22:10.6107467Z ** libs 2021-05-18T14:22:10.6155610Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o 2021-05-18T14:22:10.6474482Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-18T14:22:10.7316533Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-18T14:22:10.8134034Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o 2021-05-18T14:22:10.9154616Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:22:10.9561596Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o 2021-05-18T14:22:11.0688732Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o 2021-05-18T14:22:11.1944370Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-18T14:22:11.2759813Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:22:11.3261113Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:11.3517600Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs 2021-05-18T14:22:11.3518795Z ** R 2021-05-18T14:22:11.3664834Z ** inst 2021-05-18T14:22:11.3673758Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:12.4766681Z ** help 2021-05-18T14:22:12.6320176Z *** installing help indices 2021-05-18T14:22:12.7202222Z *** copying figures 2021-05-18T14:22:12.7207297Z ** building package indices 2021-05-18T14:22:12.9756731Z ** installing vignettes 2021-05-18T14:22:12.9820276Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:13.1691335Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:13.1857899Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:13.3910259Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:13.3923117Z * DONE (purrr) 2021-05-18T14:22:13.6344797Z * installing *source* package ‘lifecycle’ ... 2021-05-18T14:22:13.6369875Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:13.6388463Z ** using staged installation 2021-05-18T14:22:13.6505206Z ** R 2021-05-18T14:22:13.6549403Z ** inst 2021-05-18T14:22:13.6560414Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:14.0362395Z ** help 2021-05-18T14:22:14.0663390Z *** installing help indices 2021-05-18T14:22:14.0891588Z *** copying figures 2021-05-18T14:22:14.0896192Z ** building package indices 2021-05-18T14:22:14.2724790Z ** installing vignettes 2021-05-18T14:22:14.2776900Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:14.4578187Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:14.6436104Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:14.6437456Z * DONE (lifecycle) 2021-05-18T14:22:14.8421253Z * installing *source* package ‘cachem’ ... 2021-05-18T14:22:14.8431955Z ** package ‘cachem’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:14.8432939Z ** using staged installation 2021-05-18T14:22:14.8556909Z ** libs 2021-05-18T14:22:14.8603153Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o 2021-05-18T14:22:14.9092171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:22:14.9516527Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:14.9721359Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs 2021-05-18T14:22:14.9735811Z ** R 2021-05-18T14:22:14.9851772Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:15.4674424Z ** help 2021-05-18T14:22:15.4893820Z *** installing help indices 2021-05-18T14:22:15.5078758Z ** building package indices 2021-05-18T14:22:15.6885233Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:15.8720057Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:15.8888960Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:16.0748258Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:16.0756244Z * DONE (cachem) 2021-05-18T14:22:16.4931486Z * installing *source* package ‘openssl’ ... 2021-05-18T14:22:16.5050163Z ** package ‘openssl’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:16.5051267Z ** using staged installation 2021-05-18T14:22:16.5188043Z Found pkg-config cflags and libs! 2021-05-18T14:22:16.6013335Z Using PKG_CFLAGS= 2021-05-18T14:22:16.9842342Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 2021-05-18T14:22:16.9992343Z ** libs 2021-05-18T14:22:17.0045789Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-18T14:22:17.0071049Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-18T14:22:17.0865149Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:22:17.1619742Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o 2021-05-18T14:22:17.2605903Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o 2021-05-18T14:22:17.4074373Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o 2021-05-18T14:22:17.4690254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o 2021-05-18T14:22:17.5583844Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o 2021-05-18T14:22:17.6715119Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o 2021-05-18T14:22:17.7220596Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o 2021-05-18T14:22:17.8137188Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o 2021-05-18T14:22:17.8751669Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o 2021-05-18T14:22:17.9715527Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o 2021-05-18T14:22:18.0967528Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o 2021-05-18T14:22:18.1822388Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o 2021-05-18T14:22:18.3608535Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o 2021-05-18T14:22:18.4117023Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o 2021-05-18T14:22:18.4524201Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o 2021-05-18T14:22:18.5753898Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o 2021-05-18T14:22:18.7132283Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o 2021-05-18T14:22:18.8352135Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o 2021-05-18T14:22:18.8805999Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o 2021-05-18T14:22:18.9750436Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o 2021-05-18T14:22:19.0907215Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-18T14:22:19.2295507Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o 2021-05-18T14:22:19.3414145Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o 2021-05-18T14:22:19.4632598Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o 2021-05-18T14:22:19.5825334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o 2021-05-18T14:22:19.6495452Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o 2021-05-18T14:22:19.8212171Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-18T14:22:19.8264947Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:19.8838469Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs 2021-05-18T14:22:19.8839766Z ** R 2021-05-18T14:22:19.8931122Z ** inst 2021-05-18T14:22:19.8977890Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:20.7439186Z ** help 2021-05-18T14:22:20.7935617Z *** installing help indices 2021-05-18T14:22:20.8287466Z ** building package indices 2021-05-18T14:22:21.0300296Z ** installing vignettes 2021-05-18T14:22:21.0440905Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:21.2200647Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:21.2378313Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:21.4234706Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:21.4246776Z * DONE (openssl) 2021-05-18T14:22:21.6303158Z * installing *source* package ‘memoise’ ... 2021-05-18T14:22:21.6313967Z ** package ‘memoise’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:21.6315063Z ** using staged installation 2021-05-18T14:22:21.6461116Z ** R 2021-05-18T14:22:21.6552343Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:22.0210557Z ** help 2021-05-18T14:22:22.0448234Z *** installing help indices 2021-05-18T14:22:22.0677006Z ** building package indices 2021-05-18T14:22:22.2548365Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:22.4383319Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:22.6250260Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:22.6256881Z * DONE (memoise) 2021-05-18T14:22:22.9215066Z * installing *source* package ‘httr’ ... 2021-05-18T14:22:22.9260320Z ** package ‘httr’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:22.9261501Z ** using staged installation 2021-05-18T14:22:22.9402911Z ** R 2021-05-18T14:22:22.9560446Z ** demo 2021-05-18T14:22:22.9571373Z ** inst 2021-05-18T14:22:22.9583795Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:25.2282498Z ** help 2021-05-18T14:22:25.3741233Z *** installing help indices 2021-05-18T14:22:25.4675355Z ** building package indices 2021-05-18T14:22:25.7277848Z ** installing vignettes 2021-05-18T14:22:25.7341374Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:25.9004045Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:26.1115740Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:26.1141111Z * DONE (httr) 2021-05-18T14:22:26.3325145Z * installing *source* package ‘credentials’ ... 2021-05-18T14:22:26.3341238Z ** package ‘credentials’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:26.3342468Z ** using staged installation 2021-05-18T14:22:26.3467386Z ** R 2021-05-18T14:22:26.3508429Z ** inst 2021-05-18T14:22:26.3518850Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:26.7519616Z ** help 2021-05-18T14:22:26.7691722Z *** installing help indices 2021-05-18T14:22:26.7883357Z ** building package indices 2021-05-18T14:22:26.9653561Z ** installing vignettes 2021-05-18T14:22:26.9703822Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:27.2738725Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:27.4925545Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:27.4932445Z * DONE (credentials) 2021-05-18T14:22:27.7144358Z * installing *source* package ‘gh’ ... 2021-05-18T14:22:27.7160927Z ** package ‘gh’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:27.7161898Z ** using staged installation 2021-05-18T14:22:27.7299488Z ** R 2021-05-18T14:22:27.7375404Z ** inst 2021-05-18T14:22:27.7384512Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:28.6549923Z ** help 2021-05-18T14:22:28.6826478Z *** installing help indices 2021-05-18T14:22:28.7101407Z ** building package indices 2021-05-18T14:22:28.8996985Z ** installing vignettes 2021-05-18T14:22:28.8998241Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:29.1270608Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:29.3678141Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:29.3690309Z * DONE (gh) 2021-05-18T14:22:29.6095820Z * installing *source* package ‘gert’ ... 2021-05-18T14:22:29.6123122Z ** package ‘gert’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:29.6125977Z ** using staged installation 2021-05-18T14:22:29.6213070Z Found pkg-config cflags and libs! 2021-05-18T14:22:29.7031919Z Using PKG_CFLAGS= 2021-05-18T14:22:29.7033166Z Using PKG_LIBS=-lgit2 2021-05-18T14:22:29.7395156Z Configuration OK! 2021-05-18T14:22:29.7541584Z ** libs 2021-05-18T14:22:29.7589262Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o 2021-05-18T14:22:29.7613251Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o 2021-05-18T14:22:29.9586143Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o 2021-05-18T14:22:30.1720863Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o 2021-05-18T14:22:30.3830566Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o 2021-05-18T14:22:30.4626760Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o 2021-05-18T14:22:30.5323160Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o 2021-05-18T14:22:30.6685503Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:22:30.7271535Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o 2021-05-18T14:22:30.8242584Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o 2021-05-18T14:22:30.9281240Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o 2021-05-18T14:22:31.0066374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o 2021-05-18T14:22:31.1116853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o 2021-05-18T14:22:31.1890805Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:22:31.3027876Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-18T14:22:31.3734438Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:31.4077443Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs 2021-05-18T14:22:31.4078217Z ** R 2021-05-18T14:22:31.4119652Z ** inst 2021-05-18T14:22:31.4128950Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:32.2187865Z ** help 2021-05-18T14:22:32.2196211Z *** installing help indices 2021-05-18T14:22:32.2197000Z ** building package indices 2021-05-18T14:22:32.3638228Z ** installing vignettes 2021-05-18T14:22:32.3729273Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:32.5821406Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:32.5995057Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:32.8132629Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:32.8143389Z * DONE (gert) 2021-05-18T14:22:33.1825533Z * installing *source* package ‘usethis’ ... 2021-05-18T14:22:33.1899806Z ** package ‘usethis’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:33.1900851Z ** using staged installation 2021-05-18T14:22:33.2117713Z ** R 2021-05-18T14:22:33.2431430Z ** inst 2021-05-18T14:22:33.2461798Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:35.6404600Z ** help 2021-05-18T14:22:35.8243464Z *** installing help indices 2021-05-18T14:22:35.9377188Z *** copying figures 2021-05-18T14:22:35.9381759Z ** building package indices 2021-05-18T14:22:36.2232367Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:36.4871745Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:36.7924772Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:36.7952965Z * DONE (usethis) 2021-05-18T14:22:36.8040890Z 2021-05-18T14:22:36.8041708Z The downloaded source packages are in 2021-05-18T14:22:36.8043013Z ‘/tmp/Rtmpkj0JDy/downloaded_packages’ 2021-05-18T14:22:36.8056599Z Running `R CMD build`... 2021-05-18T14:22:38.7875179Z * checking for file ‘/tmp/Rtmpkj0JDy/remotes736d64b383ad/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-18T14:22:38.7876766Z * preparing ‘tic’: 2021-05-18T14:22:38.7877834Z * checking DESCRIPTION meta-information ... OK 2021-05-18T14:22:38.7878741Z * installing the package to process help pages 2021-05-18T14:22:38.7879894Z * checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:22:38.7880840Z * checking for empty or unneeded directories 2021-05-18T14:22:38.7881796Z Removed empty directory ‘tic/.circleci’ 2021-05-18T14:22:38.7882966Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:22:38.7884411Z (as ‘lib’ is unspecified) 2021-05-18T14:22:38.7885331Z Removed empty directory ‘tic/pkgdown’ 2021-05-18T14:22:38.7886260Z * building ‘tic_0.10.0.tar.gz’ 2021-05-18T14:22:39.1018452Z * installing *source* package ‘tic’ ... 2021-05-18T14:22:39.1037892Z ** using staged installation 2021-05-18T14:22:39.1259613Z ** R 2021-05-18T14:22:39.1436987Z ** inst 2021-05-18T14:22:39.1467629Z ** preparing package for lazy loading 2021-05-18T14:22:39.4836930Z ** help 2021-05-18T14:22:39.6254669Z *** installing help indices 2021-05-18T14:22:39.7112918Z *** copying figures 2021-05-18T14:22:39.7116867Z ** building package indices 2021-05-18T14:22:39.9638332Z ** installing vignettes 2021-05-18T14:22:39.9677266Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:40.1831666Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:40.4383018Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:40.4410868Z * DONE (tic) 2021-05-18T14:22:40.4528154Z Using github PAT from envvar GITHUB_PAT 2021-05-18T14:22:40.7090577Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-18T14:22:41.5896317Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-18T14:22:41.5899572Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-18T14:22:41.5901653Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-18T14:22:41.5902696Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-18T14:22:41.5903585Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-18T14:22:41.5908100Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:22:41.5909026Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-18T14:22:41.5911071Z (as ‘lib’ is unspecified) 2021-05-18T14:22:41.5911818Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-18T14:22:41.5912801Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-18T14:22:41.5913674Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-18T14:22:41.5914508Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-18T14:22:41.5915357Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-18T14:22:41.5916506Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-18T14:22:41.5917364Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-18T14:22:41.5918235Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-18T14:22:41.5919095Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-18T14:22:41.5919944Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-18T14:22:41.5920823Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-18T14:22:41.5921696Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-18T14:22:41.5922517Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-18T14:22:41.5923372Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-18T14:22:41.5924205Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-18T14:22:41.5925014Z xfun (NA -> 0.23 ) [CRAN] 2021-05-18T14:22:41.5925858Z markdown (NA -> 1.1 ) [CRAN] 2021-05-18T14:22:41.5926712Z highr (NA -> 0.9 ) [CRAN] 2021-05-18T14:22:41.5927546Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-18T14:22:41.5928396Z stringi (NA -> 1.6.2 ) [CRAN] 2021-05-18T14:22:41.5929240Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-18T14:22:41.5930055Z knitr (NA -> 1.33 ) [CRAN] 2021-05-18T14:22:41.5931285Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-18T14:22:41.5932186Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-18T14:22:41.5933041Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-18T14:22:41.5934030Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-18T14:22:41.5935582Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-18T14:22:41.5936337Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-18T14:22:41.5959256Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-18T14:22:41.5960055Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-18T14:22:41.5960803Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-18T14:22:41.5961520Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-18T14:22:41.5962256Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-18T14:22:53.7715416Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-18T14:22:54.1610049Z Content type 'binary/octet-stream' length 237667 bytes (232 KB) 2021-05-18T14:22:54.1753139Z ================================================== 2021-05-18T14:22:54.1753587Z downloaded 232 KB 2021-05-18T14:22:54.1753827Z 2021-05-18T14:22:54.1784258Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-18T14:22:54.5673694Z Content type 'binary/octet-stream' length 784938 bytes (766 KB) 2021-05-18T14:22:54.5924237Z ================================================== 2021-05-18T14:22:54.5924797Z downloaded 766 KB 2021-05-18T14:22:54.5925070Z 2021-05-18T14:22:54.5959332Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-18T14:22:55.0355320Z Content type 'application/x-tar' length 6108 bytes 2021-05-18T14:22:55.0358140Z ================================================== 2021-05-18T14:22:55.0358655Z downloaded 6108 bytes 2021-05-18T14:22:55.0358974Z 2021-05-18T14:22:55.0392825Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz' 2021-05-18T14:22:55.4305339Z Content type 'binary/octet-stream' length 1114809 bytes (1.1 MB) 2021-05-18T14:22:55.4602035Z ================================================== 2021-05-18T14:22:55.4602716Z downloaded 1.1 MB 2021-05-18T14:22:55.4603117Z 2021-05-18T14:22:55.4636340Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz' 2021-05-18T14:22:55.7540931Z Content type 'binary/octet-stream' length 689638 bytes (673 KB) 2021-05-18T14:22:55.7804683Z ================================================== 2021-05-18T14:22:55.7805340Z downloaded 673 KB 2021-05-18T14:22:55.7805735Z 2021-05-18T14:22:55.7834628Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-18T14:22:56.1726665Z Content type 'binary/octet-stream' length 13441 bytes (13 KB) 2021-05-18T14:22:56.1727808Z ================================================== 2021-05-18T14:22:56.1728445Z downloaded 13 KB 2021-05-18T14:22:56.1728875Z 2021-05-18T14:22:56.1758702Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.4.2.tar.gz' 2021-05-18T14:22:56.4185838Z Content type 'binary/octet-stream' length 270970 bytes (264 KB) 2021-05-18T14:22:56.4354837Z ================================================== 2021-05-18T14:22:56.4355514Z downloaded 264 KB 2021-05-18T14:22:56.4356029Z 2021-05-18T14:22:56.4387082Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz' 2021-05-18T14:22:56.8313491Z Content type 'binary/octet-stream' length 476003 bytes (464 KB) 2021-05-18T14:22:56.8532127Z ================================================== 2021-05-18T14:22:56.8533419Z downloaded 464 KB 2021-05-18T14:22:56.8534061Z 2021-05-18T14:22:56.8568340Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-05-18T14:22:57.1455817Z Content type 'binary/octet-stream' length 26261 bytes (25 KB) 2021-05-18T14:22:57.1456607Z ================================================== 2021-05-18T14:22:57.1457084Z downloaded 25 KB 2021-05-18T14:22:57.1457376Z 2021-05-18T14:22:57.1489694Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz' 2021-05-18T14:22:57.5407680Z Content type 'binary/octet-stream' length 120042 bytes (117 KB) 2021-05-18T14:22:57.5463373Z ================================================== 2021-05-18T14:22:57.5464354Z downloaded 117 KB 2021-05-18T14:22:57.5464833Z 2021-05-18T14:22:57.5496354Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz' 2021-05-18T14:22:57.9370538Z Content type 'binary/octet-stream' length 141949 bytes (138 KB) 2021-05-18T14:22:57.9485142Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-18T14:22:59.0219092Z Content type 'application/x-tar' length 23661 bytes (23 KB) 2021-05-18T14:22:59.0219875Z ================================================== 2021-05-18T14:22:59.0220337Z downloaded 23 KB 2021-05-18T14:22:59.0220640Z 2021-05-18T14:22:59.0258090Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ellipsis_0.3.2.tar.gz' 2021-05-18T14:22:59.3156232Z Content type 'binary/octet-stream' length 8130 bytes 2021-05-18T14:22:59.3157429Z ================================================== 2021-05-18T14:22:59.3158227Z downloaded 8130 bytes 2021-05-18T14:22:59.3158757Z 2021-05-18T14:22:59.3188848Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/digest_0.6.27.tar.gz' 2021-05-18T14:22:59.6068540Z Content type 'binary/octet-stream' length 164442 bytes (160 KB) 2021-05-18T14:22:59.6206516Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-18T14:23:00.9126656Z Content type 'binary/octet-stream' length 272736 bytes (266 KB) 2021-05-18T14:23:00.9270995Z ================================================== 2021-05-18T14:23:00.9272355Z downloaded 266 KB 2021-05-18T14:23:00.9273141Z 2021-05-18T14:23:00.9310595Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xfun_0.23.tar.gz' 2021-05-18T14:23:01.2204237Z Content type 'binary/octet-stream' length 111996 bytes (109 KB) 2021-05-18T14:23:01.2257688Z ================================================== 2021-05-18T14:23:01.2258180Z downloaded 109 KB 2021-05-18T14:23:01.2258448Z 2021-05-18T14:23:01.2294789Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/markdown_1.1.tar.gz' 2021-05-18T14:23:01.4298462Z Content type 'application/x-tar' length 81636 bytes (79 KB) 2021-05-18T14:23:01.4364777Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringi_1.6.2.tar.gz' 2021-05-18T14:23:02.3337312Z Content type 'binary/octet-stream' length 7578882 bytes (7.2 MB) 2021-05-18T14:23:02.4488344Z ================================================== 2021-05-18T14:23:02.4488880Z downloaded 7.2 MB 2021-05-18T14:23:02.4489139Z 2021-05-18T14:23:02.4522480Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-05-18T14:23:02.8435600Z Content type 'binary/octet-stream' length 2954251 bytes (2.8 MB) 2021-05-18T14:23:02.8850583Z ================================================== 2021-05-18T14:23:02.8851086Z downloaded 2.8 MB 2021-05-18T14:23:02.8851353Z 2021-05-18T14:23:02.8883919Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-05-18T14:23:03.0891929Z Content type 'binary/octet-stream' length 890176 bytes (869 KB) 2021-05-18T14:23:03.1164547Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-05-18T14:23:04.1177130Z Content type 'application/x-tar' length 11313 bytes (11 KB) 2021-05-18T14:23:04.1178643Z ================================================== 2021-05-18T14:23:04.1179362Z downloaded 11 KB 2021-05-18T14:23:04.1180015Z 2021-05-18T14:23:04.1210395Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sessioninfo_1.1.1.tar.gz' 2021-05-18T14:23:04.4888519Z Content type 'application/x-tar' length 45020 bytes (43 KB) 2021-05-18T14:23:04.4938432Z ================================================== 2021-05-18T14:23:04.4939387Z downloaded 43 KB 2021-05-18T14:23:04.4973267Z 2021-05-18T14:23:04.4974856Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/prettyunits_1.1.1.tar.gz' 2021-05-18T14:23:04.7854557Z Content type 'binary/octet-stream' length 10377 bytes (10 KB) 2021-05-18T14:23:04.7855937Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rversions_2.0.2.tar.gz' 2021-05-18T14:23:06.0714237Z Content type 'binary/octet-stream' length 40913 bytes (39 KB) 2021-05-18T14:23:06.0715194Z ================================================== 2021-05-18T14:23:06.0715658Z downloaded 39 KB 2021-05-18T14:23:06.0716270Z 2021-05-18T14:23:06.0752436Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz' 2021-05-18T14:23:06.6156564Z Content type 'binary/octet-stream' length 255098 bytes (249 KB) 2021-05-18T14:23:06.6325749Z ================================================== 2021-05-18T14:23:06.6326611Z downloaded 249 KB 2021-05-18T14:23:06.6327205Z 2021-05-18T14:23:06.6363533Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz' 2021-05-18T14:23:07.1882066Z Content type 'application/x-tar' length 44991 bytes (43 KB) 2021-05-18T14:23:07.1883950Z ================================================== 2021-05-18T14:23:07.1884440Z downloaded 43 KB 2021-05-18T14:23:07.1884744Z 2021-05-18T14:23:07.1919161Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-18T14:23:07.4979177Z Content type 'binary/octet-stream' length 370450 bytes (361 KB) 2021-05-18T14:23:07.5174495Z ================================================== 2021-05-18T14:23:07.5175060Z downloaded 361 KB 2021-05-18T14:23:07.5175359Z 2021-05-18T14:23:07.8151403Z * installing *source* package ‘utf8’ ... 2021-05-18T14:23:07.8210928Z ** package ‘utf8’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:07.8211994Z ** using staged installation 2021-05-18T14:23:07.8333502Z ** libs 2021-05-18T14:23:07.8384917Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o 2021-05-18T14:23:07.9002910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o 2021-05-18T14:23:08.0356848Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o 2021-05-18T14:23:08.0928788Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:08.1309586Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o 2021-05-18T14:23:08.1881997Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o 2021-05-18T14:23:08.3422199Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o 2021-05-18T14:23:08.4005883Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o 2021-05-18T14:23:08.5231931Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o 2021-05-18T14:23:08.5987927Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o 2021-05-18T14:23:08.6841354Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o 2021-05-18T14:23:08.7484791Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o 2021-05-18T14:23:08.8023766Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o 2021-05-18T14:23:08.8588685Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o 2021-05-18T14:23:08.9080330Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o 2021-05-18T14:23:08.9581499Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o 2021-05-18T14:23:09.0210778Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o 2021-05-18T14:23:09.0749750Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o 2021-05-18T14:23:09.1114079Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o 2021-05-18T14:23:09.1713819Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o 2021-05-18T14:23:09.2135563Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o 2021-05-18T14:23:09.4064775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o 2021-05-18T14:23:09.6875584Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o 2021-05-18T14:23:09.8499324Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o 2021-05-18T14:23:09.9146454Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o 2021-05-18T14:23:09.9720012Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o 2021-05-18T14:23:10.0396929Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o 2021-05-18T14:23:10.1059572Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o 2021-05-18T14:23:10.1128744Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:10.1437771Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs 2021-05-18T14:23:10.1442468Z ** R 2021-05-18T14:23:10.1518469Z ** inst 2021-05-18T14:23:10.1527553Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:10.5716909Z ** help 2021-05-18T14:23:10.5963267Z *** installing help indices 2021-05-18T14:23:10.6191758Z ** building package indices 2021-05-18T14:23:10.8036906Z ** installing vignettes 2021-05-18T14:23:10.8070802Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:10.9733896Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:10.9920787Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:11.1584239Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:11.1591148Z * DONE (utf8) 2021-05-18T14:23:11.3554255Z * installing *source* package ‘pkgconfig’ ... 2021-05-18T14:23:11.3563045Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:11.3564146Z ** using staged installation 2021-05-18T14:23:11.3671200Z ** R 2021-05-18T14:23:11.3695753Z ** inst 2021-05-18T14:23:11.3702614Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:11.5876844Z ** help 2021-05-18T14:23:11.6057933Z *** installing help indices 2021-05-18T14:23:11.6214405Z ** building package indices 2021-05-18T14:23:11.7982046Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:11.9603130Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:12.1221137Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:12.1225776Z * DONE (pkgconfig) 2021-05-18T14:23:12.3779890Z * installing *source* package ‘fansi’ ... 2021-05-18T14:23:12.3813431Z ** package ‘fansi’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:12.3814590Z ** using staged installation 2021-05-18T14:23:12.3934832Z ** libs 2021-05-18T14:23:12.4005826Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o 2021-05-18T14:23:12.4382228Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o 2021-05-18T14:23:12.4958820Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:12.5386825Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o 2021-05-18T14:23:12.6062566Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o 2021-05-18T14:23:13.0321556Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o 2021-05-18T14:23:13.0676318Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o 2021-05-18T14:23:13.4075307Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o 2021-05-18T14:23:13.5375485Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o 2021-05-18T14:23:13.5791559Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o 2021-05-18T14:23:13.6959171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o 2021-05-18T14:23:13.9260717Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o 2021-05-18T14:23:14.0232297Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o 2021-05-18T14:23:14.0772896Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-18T14:23:14.1321407Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:23:14.2868097Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o 2021-05-18T14:23:14.5798056Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:14.6077727Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs 2021-05-18T14:23:14.6088440Z ** R 2021-05-18T14:23:14.6182499Z ** inst 2021-05-18T14:23:14.6191164Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:15.1782909Z ** help 2021-05-18T14:23:15.2390098Z *** installing help indices 2021-05-18T14:23:15.2740000Z ** building package indices 2021-05-18T14:23:15.4785684Z ** installing vignettes 2021-05-18T14:23:15.4838488Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:15.6507505Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:15.6675530Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:15.8360446Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:15.8368654Z * DONE (fansi) 2021-05-18T14:23:16.2405714Z * installing *source* package ‘diffobj’ ... 2021-05-18T14:23:16.2500690Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:16.2503306Z ** using staged installation 2021-05-18T14:23:16.2642481Z ** libs 2021-05-18T14:23:16.2687868Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o 2021-05-18T14:23:16.4606217Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o 2021-05-18T14:23:16.5165813Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:16.5584426Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:16.5797760Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs 2021-05-18T14:23:16.5808785Z ** R 2021-05-18T14:23:16.6182054Z ** inst 2021-05-18T14:23:16.6197718Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:22.1926725Z ** help 2021-05-18T14:23:22.3750324Z *** installing help indices 2021-05-18T14:23:22.4965416Z ** building package indices 2021-05-18T14:23:22.7556621Z ** installing vignettes 2021-05-18T14:23:22.7621962Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:23.0346820Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:23.0513035Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:23.4354304Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:23.4426040Z * DONE (diffobj) 2021-05-18T14:23:24.2332157Z * installing *source* package ‘ps’ ... 2021-05-18T14:23:24.2332897Z gcc -g -O2 -Wall px.c -o px 2021-05-18T14:23:24.2333972Z ** package ‘ps’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:24.2341988Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:24.2343539Z ** using staged installation 2021-05-18T14:23:24.2344725Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o 2021-05-18T14:23:24.2346028Z ** libs 2021-05-18T14:23:24.2347001Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o 2021-05-18T14:23:24.2348445Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o 2021-05-18T14:23:24.3637350Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o 2021-05-18T14:23:24.4110212Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o 2021-05-18T14:23:24.6715416Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o 2021-05-18T14:23:24.8342035Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o 2021-05-18T14:23:24.9300181Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o 2021-05-18T14:23:25.0968298Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o 2021-05-18T14:23:25.5107308Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:25.5421270Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps 2021-05-18T14:23:25.5422980Z ** R 2021-05-18T14:23:25.5500549Z ** inst 2021-05-18T14:23:25.5509400Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:26.4512397Z ** help 2021-05-18T14:23:26.5805755Z *** installing help indices 2021-05-18T14:23:26.6618992Z ** building package indices 2021-05-18T14:23:26.9181142Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:27.0871484Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:27.1043675Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:27.2856107Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:27.2867504Z * DONE (ps) 2021-05-18T14:23:27.4829487Z * installing *source* package ‘praise’ ... 2021-05-18T14:23:27.4841736Z ** package ‘praise’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:27.4845493Z ** using staged installation 2021-05-18T14:23:27.4945255Z ** R 2021-05-18T14:23:27.4982639Z ** inst 2021-05-18T14:23:27.4992467Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:27.7080779Z ** help 2021-05-18T14:23:27.7196622Z *** installing help indices 2021-05-18T14:23:27.7394643Z ** building package indices 2021-05-18T14:23:27.9160578Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:28.0768170Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:28.2351162Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:28.2362818Z * DONE (praise) 2021-05-18T14:23:28.5373865Z * installing *source* package ‘pkgload’ ... 2021-05-18T14:23:28.5417798Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:28.5418977Z ** using staged installation 2021-05-18T14:23:28.5547539Z ** R 2021-05-18T14:23:28.5639462Z ** inst 2021-05-18T14:23:28.5646007Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:29.3194320Z ** help 2021-05-18T14:23:29.3696346Z *** installing help indices 2021-05-18T14:23:29.4108336Z ** building package indices 2021-05-18T14:23:29.6202892Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:30.0499455Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:30.4837261Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:30.4849915Z * DONE (pkgload) 2021-05-18T14:23:30.7102710Z * installing *source* package ‘evaluate’ ... 2021-05-18T14:23:30.7119892Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:30.7121124Z ** using staged installation 2021-05-18T14:23:30.7247616Z ** R 2021-05-18T14:23:30.7296257Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:31.1728472Z ** help 2021-05-18T14:23:31.1999340Z *** installing help indices 2021-05-18T14:23:31.2294151Z ** building package indices 2021-05-18T14:23:31.4181006Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:31.5817321Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:31.7496222Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:31.7504309Z * DONE (evaluate) 2021-05-18T14:23:31.9504267Z * installing *source* package ‘ellipsis’ ... 2021-05-18T14:23:31.9514238Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:31.9516273Z ** using staged installation 2021-05-18T14:23:31.9650624Z ** libs 2021-05-18T14:23:31.9699094Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o 2021-05-18T14:23:32.0383985Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:32.0812589Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:32.1017814Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs 2021-05-18T14:23:32.1030843Z ** R 2021-05-18T14:23:32.1061312Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:32.3488883Z ** help 2021-05-18T14:23:32.3720444Z *** installing help indices 2021-05-18T14:23:32.3904577Z ** building package indices 2021-05-18T14:23:32.5739335Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:32.7581408Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:32.7748145Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:32.9558168Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:32.9563736Z * DONE (ellipsis) 2021-05-18T14:23:33.2037052Z * installing *source* package ‘digest’ ... 2021-05-18T14:23:33.2066534Z ** package ‘digest’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:33.2067759Z ** using staged installation 2021-05-18T14:23:33.2167719Z ** libs 2021-05-18T14:23:33.2221494Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o 2021-05-18T14:23:33.3874648Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-18T14:23:33.6832726Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o 2021-05-18T14:23:34.5212407Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o 2021-05-18T14:23:34.7385260Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o 2021-05-18T14:23:35.2459152Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o 2021-05-18T14:23:35.3167081Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o 2021-05-18T14:23:35.5190078Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o 2021-05-18T14:23:35.5717589Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:35.5931305Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o 2021-05-18T14:23:35.7284037Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o 2021-05-18T14:23:35.7777094Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o 2021-05-18T14:23:35.8439174Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o 2021-05-18T14:23:36.1231870Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o 2021-05-18T14:23:36.2324678Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o 2021-05-18T14:23:36.7668070Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o 2021-05-18T14:23:36.8735925Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o 2021-05-18T14:23:37.1055003Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:37.1477952Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs 2021-05-18T14:23:37.1479203Z ** R 2021-05-18T14:23:37.1527559Z ** demo 2021-05-18T14:23:37.1533513Z ** inst 2021-05-18T14:23:37.1549645Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:37.6369407Z ** help 2021-05-18T14:23:37.6728722Z *** installing help indices 2021-05-18T14:23:37.6973972Z ** building package indices 2021-05-18T14:23:37.8846154Z ** installing vignettes 2021-05-18T14:23:37.8900514Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:38.0592988Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:38.0768354Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:38.2485180Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:38.2496665Z * DONE (digest) 2021-05-18T14:23:38.4554690Z * installing *source* package ‘brio’ ... 2021-05-18T14:23:38.4567657Z ** package ‘brio’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:38.4568734Z ** using staged installation 2021-05-18T14:23:38.4726677Z ** libs 2021-05-18T14:23:38.4774768Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o 2021-05-18T14:23:38.5137033Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o 2021-05-18T14:23:38.5592622Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:38.6001455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o 2021-05-18T14:23:38.6488745Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o 2021-05-18T14:23:38.6981292Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o 2021-05-18T14:23:38.7746646Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o 2021-05-18T14:23:38.8184291Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o 2021-05-18T14:23:38.8715024Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:38.8957558Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs 2021-05-18T14:23:38.8958724Z ** R 2021-05-18T14:23:38.8984425Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:39.1106608Z ** help 2021-05-18T14:23:39.1293296Z *** installing help indices 2021-05-18T14:23:39.1481147Z ** building package indices 2021-05-18T14:23:39.3291889Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:39.4948384Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:39.5120908Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:39.6749728Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:39.6755044Z * DONE (brio) 2021-05-18T14:23:39.9468565Z * installing *source* package ‘xml2’ ... 2021-05-18T14:23:39.9505634Z ** package ‘xml2’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:39.9506839Z ** using staged installation 2021-05-18T14:23:39.9741932Z Found pkg-config cflags and libs! 2021-05-18T14:23:40.0566857Z Using PKG_CFLAGS=-I/usr/include/libxml2 2021-05-18T14:23:40.0567928Z Using PKG_LIBS=-lxml2 2021-05-18T14:23:40.3113120Z ** libs 2021-05-18T14:23:40.3163986Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o 2021-05-18T14:23:40.8207226Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:40.8638427Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o 2021-05-18T14:23:41.3695180Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o 2021-05-18T14:23:41.7608601Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o 2021-05-18T14:23:42.4103744Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o 2021-05-18T14:23:44.1452044Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o 2021-05-18T14:23:44.6440389Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o 2021-05-18T14:23:45.1804063Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o 2021-05-18T14:23:45.6105166Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o 2021-05-18T14:23:46.0183195Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:46.0997902Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs 2021-05-18T14:23:46.1010556Z ** R 2021-05-18T14:23:46.1113584Z ** inst 2021-05-18T14:23:46.1125833Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:46.9360168Z ** help 2021-05-18T14:23:47.0237661Z *** installing help indices 2021-05-18T14:23:47.0692672Z ** building package indices 2021-05-18T14:23:47.2836905Z ** installing vignettes 2021-05-18T14:23:47.2916840Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:47.4645686Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:47.4826769Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:47.6685168Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:47.6697599Z * DONE (xml2) 2021-05-18T14:23:47.9268019Z * installing *source* package ‘xfun’ ... 2021-05-18T14:23:47.9299329Z ** package ‘xfun’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:47.9300511Z ** using staged installation 2021-05-18T14:23:47.9440876Z ** libs 2021-05-18T14:23:47.9509010Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:23:48.0453775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:48.0871839Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:48.1194397Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs 2021-05-18T14:23:48.1206540Z ** R 2021-05-18T14:23:48.1341994Z ** inst 2021-05-18T14:23:48.1352639Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:49.3361546Z ** help 2021-05-18T14:23:49.4706037Z *** installing help indices 2021-05-18T14:23:49.5607633Z ** building package indices 2021-05-18T14:23:49.8196911Z ** installing vignettes 2021-05-18T14:23:49.8260085Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:49.9955068Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:50.0133164Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:50.2019301Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:50.2032428Z * DONE (xfun) 2021-05-18T14:23:52.5123755Z * installing *source* package ‘stringi’ ... 2021-05-18T14:23:52.6211694Z ** package ‘stringi’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:52.6212802Z ** using staged installation 2021-05-18T14:23:52.7340224Z checking for R_HOME... /opt/R/devel/lib/R 2021-05-18T14:23:52.7341269Z checking for R... /opt/R/devel/lib/R/bin/R 2021-05-18T14:23:52.8801934Z checking for endianness... little 2021-05-18T14:23:53.0274489Z checking for R >= 3.1.0 for C++11 use... yes 2021-05-18T14:23:53.1728154Z checking for R < 3.4.0 for CXX1X flag use... no 2021-05-18T14:23:53.1732717Z checking for cat... /usr/bin/cat 2021-05-18T14:23:53.3852830Z checking for local ICUDT_DIR... icu69/data 2021-05-18T14:23:53.3855181Z checking for gcc... gcc 2021-05-18T14:23:53.4411379Z checking whether the C compiler works... yes 2021-05-18T14:23:53.4412441Z checking for C compiler default output file name... a.out 2021-05-18T14:23:53.4750562Z checking for suffix of executables... 2021-05-18T14:23:53.5173264Z checking whether we are cross compiling... no 2021-05-18T14:23:53.5389702Z checking for suffix of object files... o 2021-05-18T14:23:53.5592246Z checking whether we are using the GNU C compiler... yes 2021-05-18T14:23:53.5788585Z checking whether gcc accepts -g... yes 2021-05-18T14:23:53.6119384Z checking for gcc option to accept ISO C89... none needed 2021-05-18T14:23:53.6316525Z checking how to run the C preprocessor... gcc -E 2021-05-18T14:23:53.6529489Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-18T14:23:53.6545239Z checking for egrep... /usr/bin/grep -E 2021-05-18T14:23:53.7523737Z checking for ANSI C header files... yes 2021-05-18T14:23:53.7782448Z checking for sys/types.h... yes 2021-05-18T14:23:53.8082006Z checking for sys/stat.h... yes 2021-05-18T14:23:53.8386765Z checking for stdlib.h... yes 2021-05-18T14:23:53.8704654Z checking for string.h... yes 2021-05-18T14:23:53.9022560Z checking for memory.h... yes 2021-05-18T14:23:53.9341202Z checking for strings.h... yes 2021-05-18T14:23:53.9682381Z checking for inttypes.h... yes 2021-05-18T14:23:54.0014563Z checking for stdint.h... yes 2021-05-18T14:23:54.0389044Z checking for unistd.h... yes 2021-05-18T14:23:54.1161235Z checking elf.h usability... yes 2021-05-18T14:23:54.1262848Z checking elf.h presence... yes 2021-05-18T14:23:54.1263773Z checking for elf.h... yes 2021-05-18T14:23:54.1934825Z checking whether we are using the GNU C++ compiler... yes 2021-05-18T14:23:54.2136181Z checking whether g++ -std=gnu++11 accepts -g... yes 2021-05-18T14:23:54.5124113Z checking whether the C++ compiler supports the long long type... yes 2021-05-18T14:23:54.5360217Z checking whether the compiler implements namespaces... yes 2021-05-18T14:23:54.7114415Z checking whether the compiler supports Standard Template Library... yes 2021-05-18T14:23:55.1976985Z checking whether std::map is available... yes 2021-05-18T14:23:55.1997344Z checking for pkg-config... /usr/bin/pkg-config 2021-05-18T14:23:55.2146653Z checking with pkg-config for the system ICU4C... 66.1 2021-05-18T14:23:55.2168689Z checking for ICU4C >= 55... yes 2021-05-18T14:23:55.2232601Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done 2021-05-18T14:23:55.5668137Z checking whether an ICU4C-based project can be built... yes 2021-05-18T14:23:55.6224732Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes 2021-05-18T14:23:55.8803397Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes 2021-05-18T14:23:56.6737343Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes 2021-05-18T14:23:57.2249721Z checking the capabilities of the ICU data library (ucol)... yes 2021-05-18T14:23:57.2588621Z configure: creating ./config.status 2021-05-18T14:23:57.3348866Z config.status: creating src/Makevars 2021-05-18T14:23:57.3508120Z config.status: creating src/uconfig_local.h 2021-05-18T14:23:57.3670616Z config.status: creating src/install.libs.R 2021-05-18T14:23:57.3835681Z 2021-05-18T14:23:57.3836871Z *** stringi configure summary: 2021-05-18T14:23:57.3837513Z ICU_FOUND=1 2021-05-18T14:23:57.3838172Z STRINGI_CXXSTD=CXX_STD=CXX11 2021-05-18T14:23:57.3839378Z STRINGI_CFLAGS= -fpic 2021-05-18T14:23:57.3840565Z STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H 2021-05-18T14:23:57.3841494Z STRINGI_CXXFLAGS= -fpic 2021-05-18T14:23:57.3842429Z STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 2021-05-18T14:23:57.3843396Z STRINGI_LIBS=-licui18n -licuuc -licudata 2021-05-18T14:23:57.3843915Z 2021-05-18T14:23:57.3844714Z *** Compiler settings used: 2021-05-18T14:23:57.3845155Z CC=gcc 2021-05-18T14:23:57.3845987Z LD=g++ -std=gnu++14 2021-05-18T14:23:57.3846543Z CFLAGS=-g -O2 -fpic 2021-05-18T14:23:57.3847284Z CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG 2021-05-18T14:23:57.3847943Z CXX=g++ -std=gnu++11 2021-05-18T14:23:57.3848496Z CXXFLAGS=-g -O2 -fpic 2021-05-18T14:23:57.3848910Z LDFLAGS= 2021-05-18T14:23:57.3849253Z LIBS= 2021-05-18T14:23:57.3849483Z 2021-05-18T14:23:58.2415775Z ** libs 2021-05-18T14:23:58.2417645Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o 2021-05-18T14:23:58.2420381Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o 2021-05-18T14:23:58.6376421Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o 2021-05-18T14:23:59.2475303Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o 2021-05-18T14:23:59.9289972Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o 2021-05-18T14:24:00.4094340Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o 2021-05-18T14:24:01.1980960Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o 2021-05-18T14:24:01.7171053Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o 2021-05-18T14:24:02.2787909Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o 2021-05-18T14:24:02.7932944Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o 2021-05-18T14:24:03.3997167Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o 2021-05-18T14:24:03.9995752Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o 2021-05-18T14:24:04.6809652Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o 2021-05-18T14:24:05.2412881Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o 2021-05-18T14:24:05.8054737Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o 2021-05-18T14:24:06.7077962Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o 2021-05-18T14:24:08.0374814Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o 2021-05-18T14:24:08.6052042Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o 2021-05-18T14:24:09.2286947Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o 2021-05-18T14:24:09.7212857Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o 2021-05-18T14:24:10.2102090Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o 2021-05-18T14:24:11.0869616Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o 2021-05-18T14:24:11.7163255Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o 2021-05-18T14:24:12.3010245Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o 2021-05-18T14:24:13.0377447Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o 2021-05-18T14:24:13.7631310Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o 2021-05-18T14:24:14.3022186Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o 2021-05-18T14:24:14.9040145Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o 2021-05-18T14:24:15.5096307Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o 2021-05-18T14:24:16.3170544Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o 2021-05-18T14:24:17.1066728Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o 2021-05-18T14:24:18.0365966Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o 2021-05-18T14:24:18.8017236Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o 2021-05-18T14:24:19.4840049Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o 2021-05-18T14:24:20.1999065Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o 2021-05-18T14:24:20.8174080Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o 2021-05-18T14:24:21.4183480Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o 2021-05-18T14:24:22.0133971Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o 2021-05-18T14:24:22.6314133Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o 2021-05-18T14:24:23.3996250Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o 2021-05-18T14:24:24.1580387Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o 2021-05-18T14:24:24.9932935Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o 2021-05-18T14:24:25.7777583Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o 2021-05-18T14:24:26.4674269Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o 2021-05-18T14:24:27.1687581Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o 2021-05-18T14:24:27.6855059Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o 2021-05-18T14:24:28.3507989Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o 2021-05-18T14:24:29.0112867Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o 2021-05-18T14:24:29.6708785Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o 2021-05-18T14:24:30.2108499Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o 2021-05-18T14:24:30.7459908Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o 2021-05-18T14:24:31.4546105Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o 2021-05-18T14:24:32.1538012Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o 2021-05-18T14:24:32.9228405Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o 2021-05-18T14:24:33.6478230Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o 2021-05-18T14:24:34.3515828Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o 2021-05-18T14:24:34.9793218Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o 2021-05-18T14:24:34.9932434Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o 2021-05-18T14:24:35.7704378Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o 2021-05-18T14:24:36.3070677Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o 2021-05-18T14:24:36.8477661Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o 2021-05-18T14:24:37.5809794Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o 2021-05-18T14:24:38.2916684Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o 2021-05-18T14:24:39.1572360Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o 2021-05-18T14:24:39.7944521Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o 2021-05-18T14:24:40.5426725Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o 2021-05-18T14:24:41.1709250Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o 2021-05-18T14:24:42.6403447Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o 2021-05-18T14:24:43.2385820Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o 2021-05-18T14:24:43.7763735Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o 2021-05-18T14:24:44.5570937Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o 2021-05-18T14:24:45.0644219Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o 2021-05-18T14:24:45.6142316Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o 2021-05-18T14:24:46.3628396Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o 2021-05-18T14:24:47.0402304Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o 2021-05-18T14:24:47.8974604Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o 2021-05-18T14:24:48.5393670Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o 2021-05-18T14:24:49.1390580Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o 2021-05-18T14:24:49.6550072Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o 2021-05-18T14:24:50.1466337Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o 2021-05-18T14:24:50.6598693Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o 2021-05-18T14:24:51.1019297Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o 2021-05-18T14:24:51.6350534Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o 2021-05-18T14:24:52.7590375Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:24:52.9534505Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi 2021-05-18T14:24:53.0261447Z ** R 2021-05-18T14:24:53.0540703Z ** inst 2021-05-18T14:24:53.0547863Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:54.0233960Z ** help 2021-05-18T14:24:54.4345513Z *** installing help indices 2021-05-18T14:24:54.6312705Z ** building package indices 2021-05-18T14:24:54.9985247Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:55.1721527Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:24:55.1926715Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:55.3837154Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:55.3838351Z * DONE (stringi) 2021-05-18T14:24:56.2516462Z * installing *source* package ‘Rcpp’ ... 2021-05-18T14:24:56.2853634Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:56.2854847Z ** using staged installation 2021-05-18T14:24:56.2956597Z ** libs 2021-05-18T14:24:56.3004744Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o 2021-05-18T14:24:59.2720667Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o 2021-05-18T14:25:13.7227586Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o 2021-05-18T14:25:13.9107922Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o 2021-05-18T14:25:17.0091837Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o 2021-05-18T14:25:22.9358821Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o 2021-05-18T14:25:25.6700880Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:25:25.8172095Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs 2021-05-18T14:25:25.8276454Z ** R 2021-05-18T14:25:25.8391527Z ** inst 2021-05-18T14:25:25.8726675Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:25:27.3841676Z ** help 2021-05-18T14:25:27.4743340Z *** installing help indices 2021-05-18T14:25:27.5314936Z ** building package indices 2021-05-18T14:25:27.7552729Z ** installing vignettes 2021-05-18T14:25:27.7616231Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:25:28.0101648Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:25:28.0320606Z ** testing if installed package can be loaded from final location 2021-05-18T14:25:28.3068274Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:25:28.3146612Z * DONE (Rcpp) 2021-05-18T14:25:28.5848104Z * installing *source* package ‘commonmark’ ... 2021-05-18T14:25:28.5884842Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked 2021-05-18T14:25:28.5886036Z ** using staged installation 2021-05-18T14:25:28.5993466Z ** libs 2021-05-18T14:25:28.6045524Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a 2021-05-18T14:25:28.6081864Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o 2021-05-18T14:25:28.6523920Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:25:28.6898517Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o 2021-05-18T14:25:28.7481036Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o 2021-05-18T14:25:28.7917519Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o 2021-05-18T14:25:29.0543277Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o 2021-05-18T14:25:29.1361848Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o 2021-05-18T14:25:29.5473557Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o 2021-05-18T14:25:30.2229150Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o 2021-05-18T14:25:31.8349126Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o 2021-05-18T14:25:34.7033195Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o 2021-05-18T14:25:34.8218608Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o 2021-05-18T14:25:34.8652702Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o 2021-05-18T14:25:34.9568146Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o 2021-05-18T14:25:35.0358524Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o 2021-05-18T14:25:35.1124131Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o 2021-05-18T14:25:35.2901744Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o 2021-05-18T14:25:35.4724165Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o 2021-05-18T14:25:35.5885689Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o 2021-05-18T14:25:35.6280612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o 2021-05-18T14:25:35.6675411Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o 2021-05-18T14:25:35.7661705Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o 2021-05-18T14:25:35.7932507Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o 2021-05-18T14:25:35.8477924Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o 2021-05-18T14:25:35.8856346Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o 2021-05-18T14:25:35.9199752Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o 2021-05-18T14:25:35.9703696Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o 2021-05-18T14:25:36.0315149Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o 2021-05-18T14:25:36.1213412Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o 2021-05-18T14:25:36.1623685Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o 2021-05-18T14:25:36.2301469Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o 2021-05-18T14:25:36.3877820Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o 2021-05-18T14:25:36.4159812Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o 2021-05-18T14:25:36.5446050Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o 2021-05-18T14:25:36.6178990Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o 2021-05-18T14:25:36.8675248Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o 2021-05-18T14:25:36.9154375Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o 2021-05-18T14:25:36.9270559Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:25:36.9677678Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs 2021-05-18T14:25:36.9729743Z ** R 2021-05-18T14:25:36.9753991Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:25:37.1866921Z ** help 2021-05-18T14:25:37.1983062Z *** installing help indices 2021-05-18T14:25:37.2134506Z ** building package indices 2021-05-18T14:25:37.3888493Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:25:37.5548349Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:25:37.5747860Z ** testing if installed package can be loaded from final location 2021-05-18T14:25:37.7353375Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:25:37.7358416Z * DONE (commonmark) 2021-05-18T14:25:37.9645604Z * installing *source* package ‘brew’ ... 2021-05-18T14:25:37.9650905Z ** using staged installation 2021-05-18T14:25:37.9728211Z ** R 2021-05-18T14:25:37.9754057Z ** inst 2021-05-18T14:25:37.9778816Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:25:38.2956779Z ** help 2021-05-18T14:25:38.3057033Z *** installing help indices 2021-05-18T14:25:38.3216506Z ** building package indices 2021-05-18T14:25:38.4989829Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:25:38.6603018Z ** testing if installed package can be loaded from final location 2021-05-18T14:25:38.8228685Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:25:38.8237135Z * DONE (brew) 2021-05-18T14:25:39.0316817Z * installing *source* package ‘sessioninfo’ ... 2021-05-18T14:25:39.0329528Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked 2021-05-18T14:25:39.0330616Z ** using staged installation 2021-05-18T14:25:39.0482796Z ** R 2021-05-18T14:25:39.0520119Z ** inst 2021-05-18T14:25:39.0526042Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:25:39.4430312Z ** help 2021-05-18T14:25:39.4579295Z *** installing help indices 2021-05-18T14:25:39.4747401Z ** building package indices 2021-05-18T14:25:39.6533833Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:25:39.8603351Z ** testing if installed package can be loaded from final location 2021-05-18T14:25:40.0701841Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:25:40.0707807Z * DONE (sessioninfo) 2021-05-18T14:25:40.2673933Z * installing *source* package ‘prettyunits’ ... 2021-05-18T14:25:40.2683761Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked 2021-05-18T14:25:40.2684879Z ** using staged installation 2021-05-18T14:25:40.2786188Z ** R 2021-05-18T14:25:40.2823522Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:25:40.5672756Z ** help 2021-05-18T14:25:40.5922310Z *** installing help indices 2021-05-18T14:25:40.6110735Z ** building package indices 2021-05-18T14:25:40.7935391Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:25:40.9551991Z ** testing if installed package can be loaded from final location 2021-05-18T14:25:41.1194075Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:25:41.1195213Z * DONE (prettyunits) 2021-05-18T14:25:41.5999209Z * installing *source* package ‘vctrs’ ... 2021-05-18T14:25:41.6135590Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked 2021-05-18T14:25:41.6136866Z ** using staged installation 2021-05-18T14:25:41.6298899Z ** libs 2021-05-18T14:25:41.6364609Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o 2021-05-18T14:25:41.7428439Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o 2021-05-18T14:25:41.8210811Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o 2021-05-18T14:25:41.8991687Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o 2021-05-18T14:25:42.1216361Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o 2021-05-18T14:25:42.2298451Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o 2021-05-18T14:25:42.3565596Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o 2021-05-18T14:25:42.4145663Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o 2021-05-18T14:25:42.5122101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o 2021-05-18T14:25:42.5806357Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o 2021-05-18T14:25:42.7047585Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o 2021-05-18T14:25:42.8907612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o 2021-05-18T14:25:43.0015411Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-18T14:25:43.0818407Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o 2021-05-18T14:25:43.3121980Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o 2021-05-18T14:25:43.3673852Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o 2021-05-18T14:25:43.7269321Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o 2021-05-18T14:25:43.8092557Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o 2021-05-18T14:25:43.9226676Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o 2021-05-18T14:25:44.0342477Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o 2021-05-18T14:25:44.0861916Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o 2021-05-18T14:25:44.2997966Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:25:44.3548867Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o 2021-05-18T14:25:44.6466740Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o 2021-05-18T14:25:44.7142290Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o 2021-05-18T14:25:45.3767779Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o 2021-05-18T14:25:45.5175124Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o 2021-05-18T14:25:45.5827101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o 2021-05-18T14:25:45.6490625Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o 2021-05-18T14:25:45.7942011Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o 2021-05-18T14:25:45.8931084Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o 2021-05-18T14:25:46.0092711Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o 2021-05-18T14:25:46.1092471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o 2021-05-18T14:25:46.2305466Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o 2021-05-18T14:25:46.4561404Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o 2021-05-18T14:25:46.5446227Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o 2021-05-18T14:25:46.6196851Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o 2021-05-18T14:25:46.7226386Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o 2021-05-18T14:25:47.1452831Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o 2021-05-18T14:25:47.4718661Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o 2021-05-18T14:25:47.6967418Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o 2021-05-18T14:25:47.8533927Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o 2021-05-18T14:25:48.1081249Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-18T14:25:48.1584585Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o 2021-05-18T14:25:48.3408767Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o 2021-05-18T14:25:48.4765648Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o 2021-05-18T14:25:48.5734141Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o 2021-05-18T14:25:48.8998609Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o 2021-05-18T14:25:49.0427483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o 2021-05-18T14:25:49.1634246Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o 2021-05-18T14:25:49.2579912Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o 2021-05-18T14:25:49.3259118Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o 2021-05-18T14:25:49.4378077Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o 2021-05-18T14:25:49.5578442Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o 2021-05-18T14:25:49.6725207Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o 2021-05-18T14:25:49.7657046Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o 2021-05-18T14:25:49.8348660Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o 2021-05-18T14:25:49.9003423Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o 2021-05-18T14:25:49.9490892Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:25:50.5353390Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-18T14:25:50.5720718Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:25:50.6277721Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs 2021-05-18T14:25:50.6290782Z ** R 2021-05-18T14:25:50.6615917Z ** inst 2021-05-18T14:25:50.6635309Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:25:53.0163528Z ** help 2021-05-18T14:25:53.2554140Z *** installing help indices 2021-05-18T14:25:53.4127500Z *** copying figures 2021-05-18T14:25:53.4136738Z ** building package indices 2021-05-18T14:25:53.7130009Z ** installing vignettes 2021-05-18T14:25:53.7299467Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:25:53.9446740Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:25:53.9633710Z ** testing if installed package can be loaded from final location 2021-05-18T14:25:54.2268312Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:25:54.2302854Z * DONE (vctrs) 2021-05-18T14:25:54.5018136Z * installing *source* package ‘processx’ ... 2021-05-18T14:25:54.5052713Z ** package ‘processx’ successfully unpacked and MD5 sums checked 2021-05-18T14:25:54.5053917Z ** using staged installation 2021-05-18T14:25:54.5212299Z ** libs 2021-05-18T14:25:54.5263045Z gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px 2021-05-18T14:25:54.6570498Z gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ 2021-05-18T14:25:54.6571801Z supervisor/utils.c -o supervisor/supervisor 2021-05-18T14:25:54.8178221Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:25:54.8990601Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o 2021-05-18T14:25:54.9866117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o 2021-05-18T14:25:55.0410736Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ 2021-05-18T14:25:55.0412166Z -L"/opt/R/devel/lib/R/lib" -lR 2021-05-18T14:25:55.0626458Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:25:55.1288729Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o 2021-05-18T14:25:55.2233559Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o 2021-05-18T14:25:55.5404765Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o 2021-05-18T14:25:55.6243626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o 2021-05-18T14:25:55.7283536Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o 2021-05-18T14:25:55.8166849Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o 2021-05-18T14:25:55.8863425Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o 2021-05-18T14:25:56.1847014Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o 2021-05-18T14:25:56.2752109Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o 2021-05-18T14:25:56.3726601Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o 2021-05-18T14:25:56.4249313Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o 2021-05-18T14:25:56.4907973Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:25:56.5198102Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx 2021-05-18T14:25:56.5205989Z ** R 2021-05-18T14:25:56.5334911Z ** inst 2021-05-18T14:25:56.5341626Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:25:57.9966373Z ** help 2021-05-18T14:25:58.0658284Z *** installing help indices 2021-05-18T14:25:58.1040166Z ** building package indices 2021-05-18T14:25:58.3118494Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:25:58.4924079Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:25:58.5174708Z ** testing if installed package can be loaded from final location 2021-05-18T14:25:58.7184519Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:25:58.7200172Z * DONE (processx) 2021-05-18T14:25:58.9570392Z * installing *source* package ‘markdown’ ... 2021-05-18T14:25:58.9593523Z ** package ‘markdown’ successfully unpacked and MD5 sums checked 2021-05-18T14:25:58.9594732Z ** using staged installation 2021-05-18T14:25:58.9736885Z ** libs 2021-05-18T14:25:58.9785979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o 2021-05-18T14:25:59.0407016Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-05-18T14:25:59.0890465Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o 2021-05-18T14:25:59.2475523Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o 2021-05-18T14:25:59.3459452Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o 2021-05-18T14:25:59.4151689Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o 2021-05-18T14:25:59.4533852Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o 2021-05-18T14:25:59.4899654Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o 2021-05-18T14:25:59.6896638Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o 2021-05-18T14:25:59.8193975Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o 2021-05-18T14:26:00.8229787Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o 2021-05-18T14:26:00.8683621Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:26:00.8917521Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs 2021-05-18T14:26:00.8931346Z ** R 2021-05-18T14:26:00.8978144Z ** inst 2021-05-18T14:26:00.8993885Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:01.2800074Z ** help 2021-05-18T14:26:01.3111070Z *** installing help indices 2021-05-18T14:26:01.3334241Z ** building package indices 2021-05-18T14:26:01.5137290Z ** installing vignettes 2021-05-18T14:26:01.5190417Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:01.6861143Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:26:01.7026475Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:01.8679624Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:01.8689029Z * DONE (markdown) 2021-05-18T14:26:02.0713407Z * installing *source* package ‘highr’ ... 2021-05-18T14:26:02.0723587Z ** package ‘highr’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:02.0724662Z ** using staged installation 2021-05-18T14:26:02.0867805Z ** R 2021-05-18T14:26:02.0901339Z ** inst 2021-05-18T14:26:02.0911609Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:02.3705813Z ** help 2021-05-18T14:26:02.3818098Z *** installing help indices 2021-05-18T14:26:02.3964772Z ** building package indices 2021-05-18T14:26:02.5711546Z ** installing vignettes 2021-05-18T14:26:02.5755880Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:02.7226607Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:02.8847490Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:02.8854002Z * DONE (highr) 2021-05-18T14:26:03.1433083Z * installing *source* package ‘stringr’ ... 2021-05-18T14:26:03.1464635Z ** package ‘stringr’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:03.1465834Z ** using staged installation 2021-05-18T14:26:03.1617688Z ** R 2021-05-18T14:26:03.1690165Z ** data 2021-05-18T14:26:03.1693562Z *** moving datasets to lazyload DB 2021-05-18T14:26:03.1856525Z ** inst 2021-05-18T14:26:03.1868773Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:03.5916594Z ** help 2021-05-18T14:26:03.6611552Z *** installing help indices 2021-05-18T14:26:03.7108219Z *** copying figures 2021-05-18T14:26:03.7110299Z ** building package indices 2021-05-18T14:26:03.9062455Z ** installing vignettes 2021-05-18T14:26:03.9123627Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:04.0902408Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:04.2716423Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:04.2725907Z * DONE (stringr) 2021-05-18T14:26:04.4774676Z * installing *source* package ‘rversions’ ... 2021-05-18T14:26:04.4786348Z ** package ‘rversions’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:04.4788448Z ** using staged installation 2021-05-18T14:26:04.4924749Z ** R 2021-05-18T14:26:04.4960040Z ** inst 2021-05-18T14:26:04.4968410Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:04.7996824Z ** help 2021-05-18T14:26:04.8147642Z *** installing help indices 2021-05-18T14:26:04.8341330Z *** copying figures 2021-05-18T14:26:04.8344189Z ** building package indices 2021-05-18T14:26:05.0187363Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:05.2083382Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:05.3972542Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:05.3978924Z * DONE (rversions) 2021-05-18T14:26:05.7827491Z * installing *source* package ‘pillar’ ... 2021-05-18T14:26:05.7923361Z ** package ‘pillar’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:05.7925435Z ** using staged installation 2021-05-18T14:26:05.8094554Z ** R 2021-05-18T14:26:05.8267097Z ** inst 2021-05-18T14:26:05.8301510Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:07.3751398Z ** help 2021-05-18T14:26:07.4530930Z *** installing help indices 2021-05-18T14:26:07.5082481Z *** copying figures 2021-05-18T14:26:07.5086377Z ** building package indices 2021-05-18T14:26:07.7316875Z ** installing vignettes 2021-05-18T14:26:07.7370303Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:08.0008620Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:08.2966055Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:08.2988948Z * DONE (pillar) 2021-05-18T14:26:08.5457494Z * installing *source* package ‘callr’ ... 2021-05-18T14:26:08.5485154Z ** package ‘callr’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:08.5486273Z ** using staged installation 2021-05-18T14:26:08.5616917Z ** R 2021-05-18T14:26:08.5746480Z ** inst 2021-05-18T14:26:08.5754564Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:11.3500871Z ** help 2021-05-18T14:26:11.4622039Z *** installing help indices 2021-05-18T14:26:11.5279522Z ** building package indices 2021-05-18T14:26:11.7667023Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:11.9513215Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:12.1916209Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:12.1947543Z * DONE (callr) 2021-05-18T14:26:12.6232357Z * installing *source* package ‘knitr’ ... 2021-05-18T14:26:12.6337644Z ** package ‘knitr’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:12.6338865Z ** using staged installation 2021-05-18T14:26:12.6662769Z ** R 2021-05-18T14:26:12.7015423Z ** demo 2021-05-18T14:26:12.7020604Z ** inst 2021-05-18T14:26:12.7118728Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:16.3354100Z ** help 2021-05-18T14:26:16.5099578Z *** installing help indices 2021-05-18T14:26:16.6193473Z ** building package indices 2021-05-18T14:26:16.8916947Z ** installing vignettes 2021-05-18T14:26:16.8996441Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:17.0800988Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:17.3468775Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:17.3519376Z * DONE (knitr) 2021-05-18T14:26:17.5492274Z * installing *source* package ‘xopen’ ... 2021-05-18T14:26:17.5500103Z ** package ‘xopen’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:17.5501339Z ** using staged installation 2021-05-18T14:26:17.5638088Z ** R 2021-05-18T14:26:17.5661831Z ** inst 2021-05-18T14:26:17.5668254Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:17.7916932Z ** help 2021-05-18T14:26:17.8001594Z *** installing help indices 2021-05-18T14:26:17.8202137Z ** building package indices 2021-05-18T14:26:17.9948007Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:18.1576924Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:18.3177594Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:18.3183091Z * DONE (xopen) 2021-05-18T14:26:18.6989709Z * installing *source* package ‘tibble’ ... 2021-05-18T14:26:18.7080993Z ** package ‘tibble’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:18.7082222Z ** using staged installation 2021-05-18T14:26:18.7281999Z ** libs 2021-05-18T14:26:18.7326435Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o 2021-05-18T14:26:18.7772053Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-18T14:26:18.8390484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:26:18.8745911Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o 2021-05-18T14:26:18.9666704Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:26:18.9881150Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs 2021-05-18T14:26:18.9893866Z ** R 2021-05-18T14:26:19.0046024Z ** inst 2021-05-18T14:26:19.0074861Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:20.5919917Z ** help 2021-05-18T14:26:20.6604790Z *** installing help indices 2021-05-18T14:26:20.7054084Z *** copying figures 2021-05-18T14:26:20.7058643Z ** building package indices 2021-05-18T14:26:20.9193514Z ** installing vignettes 2021-05-18T14:26:20.9264784Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:21.2441825Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:26:21.2609868Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:21.5957073Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:21.5976834Z * DONE (tibble) 2021-05-18T14:26:21.8306196Z * installing *source* package ‘pkgbuild’ ... 2021-05-18T14:26:21.8326256Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:21.8329935Z ** using staged installation 2021-05-18T14:26:21.8465454Z ** R 2021-05-18T14:26:21.8539928Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:22.8952899Z ** help 2021-05-18T14:26:22.9289338Z *** installing help indices 2021-05-18T14:26:22.9612087Z ** building package indices 2021-05-18T14:26:23.1566253Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:23.3923582Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:23.6418687Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:23.6431387Z * DONE (pkgbuild) 2021-05-18T14:26:23.9958344Z * installing *source* package ‘roxygen2’ ... 2021-05-18T14:26:24.0026945Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:24.0028205Z ** using staged installation 2021-05-18T14:26:24.0208574Z ** libs 2021-05-18T14:26:24.0259632Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-18T14:26:28.2388692Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o 2021-05-18T14:26:31.0003561Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o 2021-05-18T14:26:33.7666965Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o 2021-05-18T14:26:36.5593459Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o 2021-05-18T14:26:40.9788006Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o 2021-05-18T14:26:43.8952371Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:26:43.9853931Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs 2021-05-18T14:26:43.9899062Z ** R 2021-05-18T14:26:44.0174715Z ** inst 2021-05-18T14:26:44.0191526Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:47.5224261Z ** help 2021-05-18T14:26:47.5882776Z *** installing help indices 2021-05-18T14:26:47.6357237Z *** copying figures 2021-05-18T14:26:47.6359054Z ** building package indices 2021-05-18T14:26:47.8496959Z ** installing vignettes 2021-05-18T14:26:47.8592466Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:48.1758802Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:26:48.1946558Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:48.5770821Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:48.5808400Z * DONE (roxygen2) 2021-05-18T14:26:48.7875746Z * installing *source* package ‘rematch2’ ... 2021-05-18T14:26:48.7887706Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:48.7889783Z ** using staged installation 2021-05-18T14:26:48.8017959Z ** R 2021-05-18T14:26:48.8058870Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:49.2501915Z ** help 2021-05-18T14:26:49.2776709Z *** installing help indices 2021-05-18T14:26:49.2976867Z ** building package indices 2021-05-18T14:26:49.4801868Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:49.7969995Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:50.1140796Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:50.1146091Z * DONE (rematch2) 2021-05-18T14:26:50.3543709Z * installing *source* package ‘rcmdcheck’ ... 2021-05-18T14:26:50.3564889Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:50.3565968Z ** using staged installation 2021-05-18T14:26:50.3690724Z ** R 2021-05-18T14:26:50.3759552Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:51.4279307Z ** help 2021-05-18T14:26:51.4612882Z *** installing help indices 2021-05-18T14:26:51.4881508Z ** building package indices 2021-05-18T14:26:51.6800420Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:51.9375208Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:52.2068911Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:52.2081206Z * DONE (rcmdcheck) 2021-05-18T14:26:52.4337501Z * installing *source* package ‘waldo’ ... 2021-05-18T14:26:52.4355019Z ** package ‘waldo’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:52.4356431Z ** using staged installation 2021-05-18T14:26:52.4485002Z ** R 2021-05-18T14:26:52.4537318Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:53.0696787Z ** help 2021-05-18T14:26:53.0831449Z *** installing help indices 2021-05-18T14:26:53.0997907Z *** copying figures 2021-05-18T14:26:53.1000004Z ** building package indices 2021-05-18T14:26:53.2773397Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:53.4972106Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:53.7246942Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:53.7255934Z * DONE (waldo) 2021-05-18T14:26:54.1931745Z * installing *source* package ‘testthat’ ... 2021-05-18T14:26:54.2046604Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:54.2047841Z ** using staged installation 2021-05-18T14:26:54.2253274Z ** libs 2021-05-18T14:26:54.2301968Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:26:54.2734683Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-18T14:26:54.3211645Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o 2021-05-18T14:26:55.0407452Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o 2021-05-18T14:26:55.5984388Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o 2021-05-18T14:27:10.8643046Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:27:11.0157441Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs 2021-05-18T14:27:11.0255728Z ** R 2021-05-18T14:27:11.0584335Z ** inst 2021-05-18T14:27:11.0615594Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:18.7673280Z ** help 2021-05-18T14:27:18.9703359Z *** installing help indices 2021-05-18T14:27:19.1236273Z *** copying figures 2021-05-18T14:27:19.1241389Z ** building package indices 2021-05-18T14:27:19.3907188Z ** installing vignettes 2021-05-18T14:27:19.4021232Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:19.5989728Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:27:19.6209806Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:19.9876405Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:19.9957775Z * DONE (testthat) 2021-05-18T14:27:20.2989429Z * installing *source* package ‘devtools’ ... 2021-05-18T14:27:20.3037484Z ** package ‘devtools’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:20.3038292Z ** using staged installation 2021-05-18T14:27:20.3273078Z ** R 2021-05-18T14:27:20.3381588Z ** inst 2021-05-18T14:27:20.3389685Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:21.8903568Z ** help 2021-05-18T14:27:21.9829385Z *** installing help indices 2021-05-18T14:27:22.0429828Z *** copying figures 2021-05-18T14:27:22.0430997Z ** building package indices 2021-05-18T14:27:22.2796878Z ** installing vignettes 2021-05-18T14:27:22.2849473Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:22.8890247Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:23.5218624Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:23.5240668Z * DONE (devtools) 2021-05-18T14:27:23.5353105Z 2021-05-18T14:27:23.5354041Z The downloaded source packages are in 2021-05-18T14:27:23.5355292Z ‘/tmp/Rtmpkj0JDy/downloaded_packages’ 2021-05-18T14:27:23.6455604Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-18T14:27:24.3846840Z 2021-05-18T14:27:24.6580592Z 2021-05-18T14:27:24.6585447Z checking for file ‘/tmp/Rtmpkj0JDy/remotes736d8f10ea0/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-18T14:27:24.6648298Z 2021-05-18T14:27:24.6650707Z ✔ checking for file ‘/tmp/Rtmpkj0JDy/remotes736d8f10ea0/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-18T14:27:24.6672690Z 2021-05-18T14:27:24.6694851Z 2021-05-18T14:27:24.6696617Z ─ preparing ‘desc’: 2021-05-18T14:27:24.6704307Z 2021-05-18T14:27:24.6706147Z 2021-05-18T14:27:24.6796371Z checking DESCRIPTION meta-information ... 2021-05-18T14:27:24.6819070Z 2021-05-18T14:27:24.6820981Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:27:24.7417402Z 2021-05-18T14:27:24.7443837Z 2021-05-18T14:27:24.7446109Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:27:24.7575108Z 2021-05-18T14:27:24.7599291Z 2021-05-18T14:27:24.7601363Z ─ checking for empty or unneeded directories 2021-05-18T14:27:24.7604179Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:27:24.7626708Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-18T14:27:24.8535374Z 2021-05-18T14:27:24.8538101Z 2021-05-18T14:27:24.8539567Z 2021-05-18T14:27:24.8632429Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:27:24.8633488Z (as ‘lib’ is unspecified) 2021-05-18T14:27:25.1408659Z * installing *source* package ‘desc’ ... 2021-05-18T14:27:25.1476718Z ** using staged installation 2021-05-18T14:27:25.1602256Z ** R 2021-05-18T14:27:25.1722070Z ** inst 2021-05-18T14:27:25.1736472Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:26.5483402Z ** help 2021-05-18T14:27:26.6691221Z *** installing help indices 2021-05-18T14:27:26.7485868Z ** building package indices 2021-05-18T14:27:26.9972808Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:27.1707809Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:27.3673210Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:27.3689515Z * DONE (desc) 2021-05-18T14:27:27.5517126Z 2021-05-18T14:27:27.5518066Z 2021-05-18T14:27:27.5525967Z checking for file ‘/tmp/Rtmpkj0JDy/remotes736d4157e737/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-18T14:27:27.5527167Z 2021-05-18T14:27:27.5532601Z checking for file ‘/tmp/Rtmpkj0JDy/remotes736d4157e737/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-18T14:27:27.5561962Z 2021-05-18T14:27:27.5563911Z ✔ checking for file ‘/tmp/Rtmpkj0JDy/remotes736d4157e737/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-18T14:27:27.5666270Z 2021-05-18T14:27:27.5667026Z 2021-05-18T14:27:27.5668462Z ─ preparing ‘ghtravis’: 2021-05-18T14:27:27.5669042Z 2021-05-18T14:27:27.5669462Z 2021-05-18T14:27:27.5770916Z checking DESCRIPTION meta-information ... 2021-05-18T14:27:27.5771465Z 2021-05-18T14:27:27.5772148Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:27:27.6188328Z 2021-05-18T14:27:27.6188952Z 2021-05-18T14:27:27.6190231Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:27:27.6190771Z 2021-05-18T14:27:27.6191103Z 2021-05-18T14:27:27.6191873Z ─ checking for empty or unneeded directories 2021-05-18T14:27:27.6192771Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:27:27.6253318Z 2021-05-18T14:27:27.6276379Z 2021-05-18T14:27:27.6279275Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-18T14:27:27.6471603Z 2021-05-18T14:27:27.6475137Z 2021-05-18T14:27:27.6478042Z 2021-05-18T14:27:27.6833118Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:27:27.6833921Z (as ‘lib’ is unspecified) 2021-05-18T14:27:27.9101341Z * installing *source* package ‘ghtravis’ ... 2021-05-18T14:27:27.9106650Z ** using staged installation 2021-05-18T14:27:27.9243040Z ** R 2021-05-18T14:27:27.9324304Z ** inst 2021-05-18T14:27:27.9333820Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:29.0188893Z ** help 2021-05-18T14:27:29.0724714Z *** installing help indices 2021-05-18T14:27:29.1121172Z ** building package indices 2021-05-18T14:27:29.3229809Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:29.9267989Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:30.5439260Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:30.5449094Z * DONE (ghtravis) 2021-05-18T14:27:30.5581793Z Using github PAT from envvar GITHUB_PAT 2021-05-18T14:27:30.7392344Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-18T14:27:31.5717292Z 2021-05-18T14:27:31.5719191Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-18T14:27:31.5720223Z generics (NA -> 0.1.0) [CRAN] 2021-05-18T14:27:31.5721158Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-18T14:27:31.5722465Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-18T14:27:31.5723352Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-18T14:27:31.5724327Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-18T14:27:31.5731264Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:27:31.5732200Z (as ‘lib’ is unspecified) 2021-05-18T14:27:45.2059226Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-18T14:27:45.4753670Z Content type 'binary/octet-stream' length 92124 bytes (89 KB) 2021-05-18T14:27:45.4858145Z ================================================== 2021-05-18T14:27:45.4862489Z downloaded 89 KB 2021-05-18T14:27:45.4862838Z 2021-05-18T14:27:45.4899822Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-18T14:27:45.6577692Z Content type 'binary/octet-stream' length 118869 bytes (116 KB) 2021-05-18T14:27:45.6686408Z ================================================== 2021-05-18T14:27:45.6686992Z downloaded 116 KB 2021-05-18T14:27:45.6687288Z 2021-05-18T14:27:45.6721134Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-18T14:27:45.9450079Z Content type 'binary/octet-stream' length 200157 bytes (195 KB) 2021-05-18T14:27:45.9618280Z ================================================== 2021-05-18T14:27:45.9619156Z downloaded 195 KB 2021-05-18T14:27:45.9619703Z 2021-05-18T14:27:45.9649672Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-18T14:27:46.1281767Z Content type 'binary/octet-stream' length 954544 bytes (932 KB) 2021-05-18T14:27:46.1544446Z ================================================== 2021-05-18T14:27:46.1544937Z downloaded 932 KB 2021-05-18T14:27:46.1545209Z 2021-05-18T14:27:46.1575501Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-18T14:27:46.3349282Z Content type 'binary/octet-stream' length 706784 bytes (690 KB) 2021-05-18T14:27:46.3590134Z ================================================== 2021-05-18T14:27:46.3590671Z downloaded 690 KB 2021-05-18T14:27:46.3590963Z 2021-05-18T14:27:46.6080143Z * installing *source* package ‘tidyselect’ ... 2021-05-18T14:27:46.6108640Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:46.6109841Z ** using staged installation 2021-05-18T14:27:46.6256465Z ** R 2021-05-18T14:27:46.6339341Z ** inst 2021-05-18T14:27:46.6349638Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:47.5606177Z ** help 2021-05-18T14:27:47.6128228Z *** installing help indices 2021-05-18T14:27:47.6496284Z ** building package indices 2021-05-18T14:27:47.8481690Z ** installing vignettes 2021-05-18T14:27:47.8538520Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:48.0879230Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:48.3299459Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:48.3310079Z * DONE (tidyselect) 2021-05-18T14:27:48.5839825Z * installing *source* package ‘generics’ ... 2021-05-18T14:27:48.5869579Z ** package ‘generics’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:48.5870369Z ** using staged installation 2021-05-18T14:27:48.5993120Z ** R 2021-05-18T14:27:48.6042571Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:48.8888687Z ** help 2021-05-18T14:27:48.9965735Z *** installing help indices 2021-05-18T14:27:49.0379214Z ** building package indices 2021-05-18T14:27:49.2533138Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:49.4177664Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:49.5832885Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:49.5838509Z * DONE (generics) 2021-05-18T14:27:49.8352138Z * installing *source* package ‘cpp11’ ... 2021-05-18T14:27:49.8384698Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:49.8385889Z ** using staged installation 2021-05-18T14:27:49.8529873Z ** R 2021-05-18T14:27:49.8569236Z ** inst 2021-05-18T14:27:49.8596250Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:50.2156843Z ** help 2021-05-18T14:27:50.2341552Z *** installing help indices 2021-05-18T14:27:50.2514047Z ** building package indices 2021-05-18T14:27:50.4284520Z ** installing vignettes 2021-05-18T14:27:50.4338170Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:50.5954177Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:50.7595253Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:50.7604296Z * DONE (cpp11) 2021-05-18T14:27:51.2172283Z * installing *source* package ‘dplyr’ ... 2021-05-18T14:27:51.2293768Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:51.2295097Z ** using staged installation 2021-05-18T14:27:51.2502405Z ** libs 2021-05-18T14:27:51.2550442Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o 2021-05-18T14:27:51.3843701Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o 2021-05-18T14:27:51.5406164Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o 2021-05-18T14:27:51.6592148Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o 2021-05-18T14:27:52.1587452Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o 2021-05-18T14:27:52.2565658Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o 2021-05-18T14:27:52.3590422Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-18T14:27:52.4628314Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o 2021-05-18T14:27:52.5841329Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o 2021-05-18T14:27:52.6991468Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o 2021-05-18T14:27:52.7874700Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o 2021-05-18T14:27:52.9408139Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:27:53.0017028Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs 2021-05-18T14:27:53.0034663Z ** R 2021-05-18T14:27:53.0448011Z ** data 2021-05-18T14:27:53.0452860Z *** moving datasets to lazyload DB 2021-05-18T14:27:53.1356199Z ** inst 2021-05-18T14:27:53.1380759Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:57.2166568Z ** help 2021-05-18T14:27:57.6471700Z *** installing help indices 2021-05-18T14:27:57.8510301Z *** copying figures 2021-05-18T14:27:57.8515674Z ** building package indices 2021-05-18T14:27:58.1756633Z ** installing vignettes 2021-05-18T14:27:58.1867648Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:58.6133545Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:27:58.6312224Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:59.1278577Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:59.1327157Z * DONE (dplyr) 2021-05-18T14:27:59.4711248Z * installing *source* package ‘tidyr’ ... 2021-05-18T14:27:59.4781220Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:59.4782420Z ** using staged installation 2021-05-18T14:27:59.4949616Z ** libs 2021-05-18T14:27:59.5007654Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o 2021-05-18T14:28:01.4010193Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o 2021-05-18T14:28:01.7088814Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o 2021-05-18T14:28:03.2498679Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o 2021-05-18T14:28:04.4391073Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:28:04.5102462Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs 2021-05-18T14:28:04.5124858Z ** R 2021-05-18T14:28:04.5273850Z ** data 2021-05-18T14:28:04.5285085Z *** moving datasets to lazyload DB 2021-05-18T14:28:04.7072413Z ** inst 2021-05-18T14:28:04.7093098Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:06.1614059Z ** help 2021-05-18T14:28:06.2701843Z *** installing help indices 2021-05-18T14:28:06.3369000Z *** copying figures 2021-05-18T14:28:06.3375916Z ** building package indices 2021-05-18T14:28:06.5748936Z ** installing vignettes 2021-05-18T14:28:06.5854633Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:07.0180202Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:28:07.0355646Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:07.4790387Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:07.4808726Z * DONE (tidyr) 2021-05-18T14:28:07.4892408Z 2021-05-18T14:28:07.4893298Z The downloaded source packages are in 2021-05-18T14:28:07.4894574Z ‘/tmp/Rtmpkj0JDy/downloaded_packages’ 2021-05-18T14:28:07.6619602Z 2021-05-18T14:28:07.6629452Z checking for file ‘/tmp/Rtmpkj0JDy/remotes736d404bafb4/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-18T14:28:07.6657465Z 2021-05-18T14:28:07.6659072Z ✔ checking for file ‘/tmp/Rtmpkj0JDy/remotes736d404bafb4/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-18T14:28:07.6744576Z 2021-05-18T14:28:07.6744995Z 2021-05-18T14:28:07.6746139Z ─ preparing ‘aghast’: 2021-05-18T14:28:07.6746434Z 2021-05-18T14:28:07.6746728Z 2021-05-18T14:28:07.6850230Z checking DESCRIPTION meta-information ... 2021-05-18T14:28:07.6850754Z 2021-05-18T14:28:07.6851478Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:28:07.7118985Z 2021-05-18T14:28:07.7119479Z 2021-05-18T14:28:07.7120901Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:28:07.7121452Z 2021-05-18T14:28:07.7129464Z 2021-05-18T14:28:07.7132025Z ─ checking for empty or unneeded directories 2021-05-18T14:28:07.7135616Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:28:07.7146448Z 2021-05-18T14:28:07.7169647Z 2021-05-18T14:28:07.7172430Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-18T14:28:07.7250869Z 2021-05-18T14:28:07.7253972Z 2021-05-18T14:28:07.7256226Z 2021-05-18T14:28:07.7320670Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:28:07.7322952Z (as ‘lib’ is unspecified) 2021-05-18T14:28:07.9262135Z * installing *source* package ‘aghast’ ... 2021-05-18T14:28:07.9265118Z ** using staged installation 2021-05-18T14:28:07.9418814Z ** R 2021-05-18T14:28:07.9470816Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:08.3396781Z ** help 2021-05-18T14:28:08.3665482Z *** installing help indices 2021-05-18T14:28:08.3875037Z ** building package indices 2021-05-18T14:28:08.5717992Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:08.7375268Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:08.9070586Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:08.9076546Z * DONE (aghast) 2021-05-18T14:28:08.9159448Z Installing 1 packages: covr 2021-05-18T14:28:08.9168793Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:28:08.9169715Z (as ‘lib’ is unspecified) 2021-05-18T14:28:22.3931364Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-18T14:28:22.3931869Z 2021-05-18T14:28:22.3938775Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-18T14:28:22.6576618Z Content type 'application/x-tar' length 83462 bytes (81 KB) 2021-05-18T14:28:22.6638929Z ================================================== 2021-05-18T14:28:22.6639814Z downloaded 81 KB 2021-05-18T14:28:22.6640345Z 2021-05-18T14:28:22.6670523Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-18T14:28:22.8323493Z Content type 'binary/octet-stream' length 91701 bytes (89 KB) 2021-05-18T14:28:22.8429920Z ================================================== 2021-05-18T14:28:22.8430409Z downloaded 89 KB 2021-05-18T14:28:22.8430675Z 2021-05-18T14:28:22.8461443Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-18T14:28:23.0107959Z Content type 'binary/octet-stream' length 147467 bytes (144 KB) 2021-05-18T14:28:23.0226190Z ================================================== 2021-05-18T14:28:23.0228426Z downloaded 144 KB 2021-05-18T14:28:23.0229375Z 2021-05-18T14:28:23.2630693Z * installing *source* package ‘lazyeval’ ... 2021-05-18T14:28:23.2656907Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:23.2658070Z ** using staged installation 2021-05-18T14:28:23.2775357Z ** libs 2021-05-18T14:28:23.2819368Z 2021-05-18T14:28:23.2820591Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o 2021-05-18T14:28:23.3391729Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:28:23.3740765Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o 2021-05-18T14:28:23.4294747Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o 2021-05-18T14:28:23.4989261Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o 2021-05-18T14:28:23.5566356Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:28:23.6218792Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:28:23.6439601Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs 2021-05-18T14:28:23.6452071Z ** R 2021-05-18T14:28:23.6513041Z ** inst 2021-05-18T14:28:23.6524441Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:24.1083494Z ** help 2021-05-18T14:28:24.1597706Z *** installing help indices 2021-05-18T14:28:24.2010347Z ** building package indices 2021-05-18T14:28:24.4081945Z ** installing vignettes 2021-05-18T14:28:24.4145287Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:24.5844150Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:28:24.6016871Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:24.7710331Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:24.7719390Z * DONE (lazyeval) 2021-05-18T14:28:25.0049002Z * installing *source* package ‘rex’ ... 2021-05-18T14:28:25.0070645Z ** package ‘rex’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:25.0071834Z ** using staged installation 2021-05-18T14:28:25.0197395Z ** R 2021-05-18T14:28:25.0248182Z ** inst 2021-05-18T14:28:25.0257915Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:25.4876885Z ** help 2021-05-18T14:28:25.5322092Z *** installing help indices 2021-05-18T14:28:25.5672448Z ** building package indices 2021-05-18T14:28:25.7714322Z ** installing vignettes 2021-05-18T14:28:25.7797318Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:25.9446897Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:26.1143267Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:26.1152170Z * DONE (rex) 2021-05-18T14:28:26.4415181Z * installing *source* package ‘covr’ ... 2021-05-18T14:28:26.4468703Z ** package ‘covr’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:26.4470650Z ** using staged installation 2021-05-18T14:28:26.4663196Z ** libs 2021-05-18T14:28:26.4706502Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-18T14:28:26.5230384Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:28:26.5366044Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs 2021-05-18T14:28:26.5378045Z ** R 2021-05-18T14:28:26.5505636Z ** inst 2021-05-18T14:28:26.5525479Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:27.7042711Z ** help 2021-05-18T14:28:27.7620770Z *** installing help indices 2021-05-18T14:28:27.8062694Z *** copying figures 2021-05-18T14:28:27.8064716Z ** building package indices 2021-05-18T14:28:28.0198663Z ** installing vignettes 2021-05-18T14:28:28.0254031Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:28.2114499Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:28:28.2282374Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:28.4317966Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:28.4319982Z * DONE (covr) 2021-05-18T14:28:28.4413418Z 2021-05-18T14:28:28.4414307Z The downloaded source packages are in 2021-05-18T14:28:28.4415580Z ‘/tmp/Rtmpkj0JDy/downloaded_packages’ 2021-05-18T14:28:28.4557312Z ##[group]Run Rscript -e "tic::before_install()" 2021-05-18T14:28:28.4557898Z Rscript -e "tic::before_install()" 2021-05-18T14:28:28.4598798Z shell: /usr/bin/bash -e {0} 2021-05-18T14:28:28.4599177Z env: 2021-05-18T14:28:28.4599580Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:28:28.4600030Z TIC_DEPLOY_KEY: 2021-05-18T14:28:28.4600785Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:28:28.4602302Z GITHUB_PAT: *** 2021-05-18T14:28:28.4603155Z COVERALLS_TOKEN: *** 2021-05-18T14:28:28.4603619Z continue-on-error: true 2021-05-18T14:28:28.4604047Z VDIFFR_RUN_TESTS: 2021-05-18T14:28:28.4604503Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:28:28.4604906Z TZ: UTC 2021-05-18T14:28:28.4605272Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:28:28.4605662Z NOT_CRAN: true 2021-05-18T14:28:28.4606001Z ##[endgroup] 2021-05-18T14:28:28.7194684Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:28:28.8349804Z Running before_install: step_install_remote_binaries() 2021-05-18T14:28:29.3081517Z Installing gifti binaries 2021-05-18T14:28:29.3092725Z [1] "neuroconductor/gifti" 2021-05-18T14:28:29.5218109Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-18T14:28:29.5224141Z Installing oro.nifti binaries 2021-05-18T14:28:29.5230975Z [1] "neuroconductor/oro.nifti" 2021-05-18T14:28:29.6601844Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-18T14:28:29.6607648Z Installing cifti binaries 2021-05-18T14:28:29.6614475Z [1] "neuroconductor/cifti" 2021-05-18T14:28:29.7971558Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-18T14:28:29.8075184Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-18T14:28:29.8075884Z remotes::install_deps(dependencies = TRUE) 2021-05-18T14:28:29.8076653Z remotes::install_cran("rcmdcheck") 2021-05-18T14:28:29.8077200Z remotes::install_cran("markdown") 2021-05-18T14:28:29.8083709Z shell: /usr/local/bin/Rscript {0} 2021-05-18T14:28:29.8084086Z env: 2021-05-18T14:28:29.8084499Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:28:29.8084925Z TIC_DEPLOY_KEY: 2021-05-18T14:28:29.8085679Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:28:29.8087245Z GITHUB_PAT: *** 2021-05-18T14:28:29.8091690Z COVERALLS_TOKEN: *** 2021-05-18T14:28:29.8092261Z continue-on-error: true 2021-05-18T14:28:29.8092708Z VDIFFR_RUN_TESTS: 2021-05-18T14:28:29.8093171Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:28:29.8093589Z TZ: UTC 2021-05-18T14:28:29.8093955Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:28:29.8094368Z NOT_CRAN: true 2021-05-18T14:28:29.8094712Z ##[endgroup] 2021-05-18T14:28:46.2377183Z gifti (NA -> e3ff5e0be...) [GitHub] 2021-05-18T14:28:46.2378758Z oro.nifti (NA -> bd06b05d2...) [GitHub] 2021-05-18T14:28:46.2379855Z cifti (NA -> a7e91f2f3...) [GitHub] 2021-05-18T14:28:46.2380879Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-18T14:28:46.2381854Z R.oo (NA -> 1.24.0 ) [CRAN] 2021-05-18T14:28:46.2382760Z R.utils (NA -> 2.10.1 ) [CRAN] 2021-05-18T14:28:46.2383715Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-18T14:28:46.2384657Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-18T14:28:46.2385562Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-18T14:28:46.2386586Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-18T14:28:46.2387955Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-18T14:28:46.2388696Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-18T14:28:46.2389353Z downloader (NA -> 0.4 ) [CRAN] 2021-05-18T14:28:46.2390022Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-18T14:28:46.2390682Z pkgfilecache (NA -> 0.1.4 ) [CRAN] 2021-05-18T14:28:46.4118257Z Downloading GitHub repo neuroconductor/gifti@e3ff5e0beb859ef5b27242365b9d4487873adb9e 2021-05-18T14:28:47.3226257Z Installing 4 packages: R.methodsS3, R.oo, R.utils, base64enc 2021-05-18T14:28:47.3227638Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-18T14:28:47.3229973Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:28:47.3230796Z R.oo (NA -> 1.24.0) [CRAN] 2021-05-18T14:28:47.3232404Z (as ‘lib’ is unspecified) 2021-05-18T14:28:47.3233062Z R.utils (NA -> 2.10.1) [CRAN] 2021-05-18T14:28:47.3233800Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-18T14:29:01.1645447Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-18T14:29:01.4321902Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-18T14:29:01.4324523Z ================================================== 2021-05-18T14:29:01.4325168Z downloaded 23 KB 2021-05-18T14:29:01.4325608Z 2021-05-18T14:29:01.4352576Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-18T14:29:01.6002049Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-18T14:29:01.6180545Z ================================================== 2021-05-18T14:29:01.6181434Z downloaded 373 KB 2021-05-18T14:29:01.6181959Z 2021-05-18T14:29:01.6215066Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-18T14:29:02.0544939Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-18T14:29:02.0728481Z ================================================== 2021-05-18T14:29:02.0729024Z downloaded 353 KB 2021-05-18T14:29:02.0729487Z 2021-05-18T14:29:02.0762320Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-18T14:29:02.3439779Z Content type 'application/x-tar' length 7843 bytes 2021-05-18T14:29:02.3440987Z ================================================== 2021-05-18T14:29:02.3441722Z downloaded 7843 bytes 2021-05-18T14:29:02.3442238Z 2021-05-18T14:29:02.5618102Z * installing *source* package ‘R.methodsS3’ ... 2021-05-18T14:29:02.5631715Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-18T14:29:02.5632793Z ** using staged installation 2021-05-18T14:29:02.5746732Z ** R 2021-05-18T14:29:02.5806787Z ** inst 2021-05-18T14:29:02.5813961Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:03.0132270Z ** help 2021-05-18T14:29:03.0491223Z *** installing help indices 2021-05-18T14:29:03.0818722Z ** building package indices 2021-05-18T14:29:03.2750871Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:03.4425259Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:03.6125783Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:03.6134748Z * DONE (R.methodsS3) 2021-05-18T14:29:03.8057172Z * installing *source* package ‘base64enc’ ... 2021-05-18T14:29:03.8067994Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-18T14:29:03.8071773Z ** using staged installation 2021-05-18T14:29:03.8170730Z ** libs 2021-05-18T14:29:03.8220918Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:29:03.9250233Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-18T14:29:03.9987059Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-18T14:29:04.0689701Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:29:04.0918113Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-18T14:29:04.0918819Z ** R 2021-05-18T14:29:04.0944610Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:04.3356850Z ** help 2021-05-18T14:29:04.3527003Z *** installing help indices 2021-05-18T14:29:04.3683325Z ** building package indices 2021-05-18T14:29:04.5493259Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:04.7151750Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:29:04.7324654Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:04.8927089Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:04.8932269Z * DONE (base64enc) 2021-05-18T14:29:05.2335342Z * installing *source* package ‘R.oo’ ... 2021-05-18T14:29:05.2401867Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-18T14:29:05.2403051Z ** using staged installation 2021-05-18T14:29:05.2526293Z ** R 2021-05-18T14:29:05.2825732Z ** inst 2021-05-18T14:29:05.2837881Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:07.6834424Z ** help 2021-05-18T14:29:08.1082703Z *** installing help indices 2021-05-18T14:29:08.3920868Z ** building package indices 2021-05-18T14:29:08.8187864Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:09.0112774Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:09.2765492Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:09.2810798Z * DONE (R.oo) 2021-05-18T14:29:09.7691510Z * installing *source* package ‘R.utils’ ... 2021-05-18T14:29:09.7815023Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-18T14:29:09.7816224Z ** using staged installation 2021-05-18T14:29:09.7946970Z ** R 2021-05-18T14:29:09.8587177Z ** inst 2021-05-18T14:29:09.8597574Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:14.9768073Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-18T14:29:14.9769697Z ** help 2021-05-18T14:29:14.9770559Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-18T14:29:15.7750055Z *** installing help indices 2021-05-18T14:29:16.2021814Z ** building package indices 2021-05-18T14:29:16.8500782Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:17.0757293Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:17.4438673Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:17.4508217Z * DONE (R.utils) 2021-05-18T14:29:17.4716541Z 2021-05-18T14:29:17.4717329Z The downloaded source packages are in 2021-05-18T14:29:17.4718464Z ‘/tmp/RtmpoGM9yn/downloaded_packages’ 2021-05-18T14:29:17.7317293Z 2021-05-18T14:29:17.7330673Z checking for file ‘/tmp/RtmpoGM9yn/remotesd56a6e36ead7/neuroconductor-gifti-e3ff5e0/DESCRIPTION’ ... 2021-05-18T14:29:17.7375393Z 2021-05-18T14:29:17.7377330Z ✔ checking for file ‘/tmp/RtmpoGM9yn/remotesd56a6e36ead7/neuroconductor-gifti-e3ff5e0/DESCRIPTION’ 2021-05-18T14:29:17.7436593Z 2021-05-18T14:29:17.7437008Z 2021-05-18T14:29:17.7437691Z ─ preparing ‘gifti’: 2021-05-18T14:29:17.7445113Z 2021-05-18T14:29:17.7445519Z 2021-05-18T14:29:17.7473533Z checking DESCRIPTION meta-information ... 2021-05-18T14:29:17.7492939Z 2021-05-18T14:29:17.7493827Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:29:17.7735859Z 2021-05-18T14:29:17.7756375Z 2021-05-18T14:29:17.7757421Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:29:17.7765303Z 2021-05-18T14:29:17.7783842Z 2021-05-18T14:29:17.7785730Z ─ checking for empty or unneeded directories 2021-05-18T14:29:17.7788401Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:29:17.7827253Z 2021-05-18T14:29:17.7845883Z 2021-05-18T14:29:17.7847697Z ─ building ‘gifti_0.7.6.tar.gz’ 2021-05-18T14:29:17.8000780Z 2021-05-18T14:29:17.8002804Z 2021-05-18T14:29:17.8004101Z 2021-05-18T14:29:17.8077428Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:29:17.8078217Z (as ‘lib’ is unspecified) 2021-05-18T14:29:18.0131928Z * installing *source* package ‘gifti’ ... 2021-05-18T14:29:18.0134697Z ** using staged installation 2021-05-18T14:29:18.0306316Z ** R 2021-05-18T14:29:18.0360570Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:18.4996827Z ** help 2021-05-18T14:29:18.5287382Z *** installing help indices 2021-05-18T14:29:18.5597805Z ** building package indices 2021-05-18T14:29:18.7556972Z ** installing vignettes 2021-05-18T14:29:18.7557864Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:18.9802107Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:19.2047228Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:19.2053303Z * DONE (gifti) 2021-05-18T14:29:19.3950109Z Downloading GitHub repo neuroconductor/oro.nifti@bd06b05d2a090c743e51d745a826e8b77af278f0 2021-05-18T14:29:20.6067245Z 2021-05-18T14:29:20.6068613Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-18T14:29:20.6069350Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-18T14:29:20.6070060Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-18T14:29:20.6070771Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-18T14:29:20.6071457Z rticles (NA -> 0.19 ) [CRAN] 2021-05-18T14:29:20.6072140Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-18T14:29:20.6072803Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-18T14:29:20.7934193Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-18T14:29:21.7363186Z 2021-05-18T14:29:21.9077052Z 2021-05-18T14:29:21.9094160Z checking for file ‘/tmp/RtmpoGM9yn/remotesd56a67e85504/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-18T14:29:21.9114501Z 2021-05-18T14:29:21.9116542Z ✔ checking for file ‘/tmp/RtmpoGM9yn/remotesd56a67e85504/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-18T14:29:21.9260973Z 2021-05-18T14:29:21.9261396Z 2021-05-18T14:29:21.9262092Z ─ preparing ‘RNifti’: 2021-05-18T14:29:21.9262384Z 2021-05-18T14:29:21.9262675Z 2021-05-18T14:29:21.9378676Z checking DESCRIPTION meta-information ... 2021-05-18T14:29:21.9397442Z 2021-05-18T14:29:21.9398233Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:29:21.9415218Z ─ cleaning src 2021-05-18T14:29:21.9421202Z 2021-05-18T14:29:21.9438304Z 2021-05-18T14:29:21.9439837Z ─ running ‘cleanup’ 2021-05-18T14:29:21.9902763Z 2021-05-18T14:29:21.9925073Z 2021-05-18T14:29:21.9927582Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:29:22.0263340Z 2021-05-18T14:29:22.0284690Z 2021-05-18T14:29:22.0286990Z ─ checking for empty or unneeded directories 2021-05-18T14:29:22.0313346Z 2021-05-18T14:29:22.0334531Z 2021-05-18T14:29:22.0336605Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-18T14:29:22.3204758Z 2021-05-18T14:29:22.3207584Z 2021-05-18T14:29:22.3209054Z 2021-05-18T14:29:22.4121099Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:29:22.4122718Z (as ‘lib’ is unspecified) 2021-05-18T14:29:22.7220722Z * installing *source* package ‘RNifti’ ... 2021-05-18T14:29:22.7222067Z ** using staged installation 2021-05-18T14:29:22.7377428Z ** libs 2021-05-18T14:29:22.7427005Z 2021-05-18T14:29:22.7429379Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-18T14:29:38.0373500Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-18T14:29:38.1123013Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-18T14:29:38.1857803Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-18T14:29:38.2175299Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-18T14:29:38.3206626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-18T14:29:38.7693390Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-18T14:29:38.8075718Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-18T14:29:38.9208896Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-18T14:29:39.0647055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-18T14:29:39.1889611Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-18T14:29:39.4144987Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-18T14:29:39.5197384Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-18T14:29:39.9994271Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-18T14:29:40.0903845Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-18T14:29:40.3822609Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-18T14:29:40.4158763Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-18T14:29:40.4580902Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-18T14:29:40.5314626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-18T14:29:41.5946291Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-18T14:29:43.7971181Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:29:43.9708686Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-18T14:29:43.9832765Z ** R 2021-05-18T14:29:43.9907909Z ** inst 2021-05-18T14:29:43.9936300Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:44.6941357Z ** help 2021-05-18T14:29:44.7433533Z *** installing help indices 2021-05-18T14:29:44.7758278Z ** building package indices 2021-05-18T14:29:44.9760244Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:45.2277666Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:29:45.2505679Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:45.5012360Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:45.5023580Z * DONE (RNifti) 2021-05-18T14:29:45.5177959Z Installing 6 packages: tinytex, htmltools, rmarkdown, rticles, abind, bitops 2021-05-18T14:29:45.5183435Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:29:45.5184435Z (as ‘lib’ is unspecified) 2021-05-18T14:29:59.0161343Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-18T14:29:59.2846511Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-18T14:29:59.2856501Z ================================================== 2021-05-18T14:29:59.2857433Z downloaded 28 KB 2021-05-18T14:29:59.2857939Z 2021-05-18T14:29:59.2885913Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-18T14:29:59.5561158Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-18T14:29:59.5615080Z ================================================== 2021-05-18T14:29:59.5615828Z downloaded 70 KB 2021-05-18T14:29:59.5616285Z 2021-05-18T14:29:59.5642129Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-18T14:29:59.8451172Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-18T14:29:59.8820448Z ================================================== 2021-05-18T14:29:59.8821441Z downloaded 3.1 MB 2021-05-18T14:29:59.8821974Z 2021-05-18T14:29:59.8853052Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rticles_0.19.tar.gz' 2021-05-18T14:30:00.2780913Z Content type 'binary/octet-stream' length 1634953 bytes (1.6 MB) 2021-05-18T14:30:00.3087018Z ================================================== 2021-05-18T14:30:00.3087875Z downloaded 1.6 MB 2021-05-18T14:30:00.3088434Z 2021-05-18T14:30:00.3119359Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-18T14:30:00.4902540Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-18T14:30:00.4903197Z ================================================== 2021-05-18T14:30:00.4903609Z downloaded 21 KB 2021-05-18T14:30:00.4903869Z 2021-05-18T14:30:00.4933231Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-18T14:30:00.6582518Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-18T14:30:00.6583646Z ================================================== 2021-05-18T14:30:00.6584507Z downloaded 10 KB 2021-05-18T14:30:00.6584869Z 2021-05-18T14:30:00.8590915Z * installing *source* package ‘tinytex’ ... 2021-05-18T14:30:00.8606026Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:00.8607202Z ** using staged installation 2021-05-18T14:30:00.8793919Z ** R 2021-05-18T14:30:00.8861504Z ** inst 2021-05-18T14:30:00.8867706Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:01.5184027Z ** help 2021-05-18T14:30:01.5491208Z *** installing help indices 2021-05-18T14:30:01.5747202Z ** building package indices 2021-05-18T14:30:01.7646510Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:01.9378209Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:02.1191465Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:02.1204221Z * DONE (tinytex) 2021-05-18T14:30:02.3521251Z * installing *source* package ‘htmltools’ ... 2021-05-18T14:30:02.3542711Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:02.3543898Z ** using staged installation 2021-05-18T14:30:02.3679069Z ** libs 2021-05-18T14:30:02.3722371Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:30:02.4148177Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-18T14:30:02.5160460Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:30:02.5397619Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-18T14:30:02.5398819Z ** R 2021-05-18T14:30:02.5497303Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:03.8188549Z ** help 2021-05-18T14:30:03.8943189Z *** installing help indices 2021-05-18T14:30:03.9465272Z ** building package indices 2021-05-18T14:30:04.1753140Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:04.3644728Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:30:04.3814658Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:04.5936970Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:04.5950634Z * DONE (htmltools) 2021-05-18T14:30:04.7969116Z * installing *source* package ‘abind’ ... 2021-05-18T14:30:04.7980606Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:04.7981673Z ** using staged installation 2021-05-18T14:30:04.8090899Z ** R 2021-05-18T14:30:04.8132750Z ** inst 2021-05-18T14:30:04.8139456Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:05.3157739Z ** help 2021-05-18T14:30:05.3399829Z *** installing help indices 2021-05-18T14:30:05.3605982Z ** building package indices 2021-05-18T14:30:05.5436091Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:05.7071560Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:05.8767342Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:05.8774824Z * DONE (abind) 2021-05-18T14:30:06.0702318Z * installing *source* package ‘bitops’ ... 2021-05-18T14:30:06.0710465Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:06.0711521Z ** using staged installation 2021-05-18T14:30:06.0800204Z ** libs 2021-05-18T14:30:06.0848124Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-18T14:30:06.2585070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-18T14:30:06.3133853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:30:06.3564858Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:30:06.3717937Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-18T14:30:06.3726729Z ** R 2021-05-18T14:30:06.3750334Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:06.5808306Z ** help 2021-05-18T14:30:06.6043451Z *** installing help indices 2021-05-18T14:30:06.6211183Z ** building package indices 2021-05-18T14:30:06.7984822Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:06.9634866Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:30:06.9807812Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:07.1437201Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:07.1438019Z * DONE (bitops) 2021-05-18T14:30:07.8573680Z * installing *source* package ‘rmarkdown’ ... 2021-05-18T14:30:07.8842983Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:07.8844109Z ** using staged installation 2021-05-18T14:30:07.9097358Z ** R 2021-05-18T14:30:07.9445696Z ** inst 2021-05-18T14:30:07.9654416Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:10.7937489Z ** help 2021-05-18T14:30:10.9750400Z *** installing help indices 2021-05-18T14:30:11.1033853Z *** copying figures 2021-05-18T14:30:11.1036721Z ** building package indices 2021-05-18T14:30:11.3716869Z ** installing vignettes 2021-05-18T14:30:11.3782493Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:11.6017316Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:11.8840363Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:11.8896102Z * DONE (rmarkdown) 2021-05-18T14:30:12.4087869Z * installing *source* package ‘rticles’ ... 2021-05-18T14:30:12.4245150Z ** package ‘rticles’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:12.4247632Z ** using staged installation 2021-05-18T14:30:12.4444608Z ** R 2021-05-18T14:30:12.4501607Z ** inst 2021-05-18T14:30:12.4712642Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:12.8756770Z ** help 2021-05-18T14:30:12.9081731Z *** installing help indices 2021-05-18T14:30:12.9384906Z ** building package indices 2021-05-18T14:30:13.1298524Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:13.3584929Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:13.5837432Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:13.5873940Z * DONE (rticles) 2021-05-18T14:30:13.5987179Z 2021-05-18T14:30:13.5988083Z The downloaded source packages are in 2021-05-18T14:30:13.5989352Z ‘/tmp/RtmpoGM9yn/downloaded_packages’ 2021-05-18T14:30:13.6920932Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-18T14:30:13.6921852Z Use `force = TRUE` to force installation 2021-05-18T14:30:13.8629678Z 2021-05-18T14:30:13.8646317Z checking for file ‘/tmp/RtmpoGM9yn/remotesd56a48caf01f/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ ... 2021-05-18T14:30:13.8662739Z 2021-05-18T14:30:13.8664491Z ✔ checking for file ‘/tmp/RtmpoGM9yn/remotesd56a48caf01f/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ 2021-05-18T14:30:13.8917698Z 2021-05-18T14:30:13.8918442Z 2021-05-18T14:30:13.8919413Z ─ preparing ‘oro.nifti’: 2021-05-18T14:30:13.8920694Z 2021-05-18T14:30:13.8921204Z 2021-05-18T14:30:13.9043945Z checking DESCRIPTION meta-information ... 2021-05-18T14:30:13.9060482Z 2021-05-18T14:30:13.9061593Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:30:14.0355555Z 2021-05-18T14:30:14.0376357Z 2021-05-18T14:30:14.0377901Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:30:14.0382261Z 2021-05-18T14:30:14.0400675Z 2021-05-18T14:30:14.0401841Z ─ checking for empty or unneeded directories 2021-05-18T14:30:14.0405037Z 2021-05-18T14:30:14.0405564Z 2021-05-18T14:30:14.0406482Z Removed empty directory ‘oro.nifti/vignettes’ 2021-05-18T14:30:14.0412921Z 2021-05-18T14:30:14.0413598Z 2021-05-18T14:30:14.0414773Z Omitted ‘LazyData’ and ‘LazyDataCompression’ from DESCRIPTION 2021-05-18T14:30:14.0540811Z 2021-05-18T14:30:14.0557518Z 2021-05-18T14:30:14.0558547Z ─ building ‘oro.nifti_0.10.3.tar.gz’ 2021-05-18T14:30:14.5202427Z 2021-05-18T14:30:14.5205036Z 2021-05-18T14:30:14.5205418Z 2021-05-18T14:30:14.5371757Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:30:14.5372568Z (as ‘lib’ is unspecified) 2021-05-18T14:30:15.0312446Z * installing *source* package ‘oro.nifti’ ... 2021-05-18T14:30:15.0313808Z ** using staged installation 2021-05-18T14:30:15.0494203Z ** R 2021-05-18T14:30:15.0913189Z ** demo 2021-05-18T14:30:15.0919247Z ** inst 2021-05-18T14:30:15.0987664Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:21.1913947Z 2021-05-18T14:30:21.1915127Z ** help 2021-05-18T14:30:21.1916792Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-18T14:30:21.5319468Z *** installing help indices 2021-05-18T14:30:21.7832229Z ** building package indices 2021-05-18T14:30:22.1685982Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:22.6913194Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:23.3190290Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:23.3263293Z * DONE (oro.nifti) 2021-05-18T14:30:23.5217391Z Downloading GitHub repo neuroconductor/cifti@a7e91f2f3d3e678bd178f132fe0614499802213d 2021-05-18T14:30:25.5556179Z 2021-05-18T14:30:25.7553409Z 2021-05-18T14:30:25.7594898Z checking for file ‘/tmp/RtmpoGM9yn/remotesd56a24c19262/neuroconductor-cifti-a7e91f2/DESCRIPTION’ ... 2021-05-18T14:30:25.7595769Z 2021-05-18T14:30:25.7597082Z ✔ checking for file ‘/tmp/RtmpoGM9yn/remotesd56a24c19262/neuroconductor-cifti-a7e91f2/DESCRIPTION’ 2021-05-18T14:30:25.7781357Z 2021-05-18T14:30:25.7781817Z 2021-05-18T14:30:25.7782627Z ─ preparing ‘cifti’: 2021-05-18T14:30:25.7782917Z 2021-05-18T14:30:25.7783212Z 2021-05-18T14:30:25.7856032Z checking DESCRIPTION meta-information ... 2021-05-18T14:30:25.7873940Z 2021-05-18T14:30:25.7875307Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:30:25.8201491Z 2021-05-18T14:30:25.8222134Z 2021-05-18T14:30:25.8223820Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:30:25.8229922Z 2021-05-18T14:30:25.8249859Z 2021-05-18T14:30:25.8251320Z ─ checking for empty or unneeded directories 2021-05-18T14:30:25.8253120Z Removed empty directory ‘cifti/docs’ 2021-05-18T14:30:25.8254801Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:30:25.8308278Z 2021-05-18T14:30:25.8326697Z 2021-05-18T14:30:25.8327945Z ─ building ‘cifti_0.4.7.tar.gz’ 2021-05-18T14:30:25.9958512Z 2021-05-18T14:30:25.9960473Z 2021-05-18T14:30:25.9961458Z 2021-05-18T14:30:26.0057379Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:30:26.0058398Z (as ‘lib’ is unspecified) 2021-05-18T14:30:26.2877839Z * installing *source* package ‘cifti’ ... 2021-05-18T14:30:26.2882637Z ** using staged installation 2021-05-18T14:30:26.3026675Z ** R 2021-05-18T14:30:26.3087828Z ** inst 2021-05-18T14:30:26.3118786Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:27.2458845Z ** help 2021-05-18T14:30:27.2817306Z *** installing help indices 2021-05-18T14:30:27.3112540Z ** building package indices 2021-05-18T14:30:27.5030862Z ** installing vignettes 2021-05-18T14:30:27.5066401Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:28.1283407Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:28.7605454Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:28.7614010Z * DONE (cifti) 2021-05-18T14:30:28.7719542Z Installing 12 packages: R.methodsS3, R.oo, R.utils, base64enc, RNifti, abind, bitops, tinytex, htmltools, downloader, rmarkdown, pkgfilecache 2021-05-18T14:30:28.7728618Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:30:28.7729419Z (as ‘lib’ is unspecified) 2021-05-18T14:30:42.1829803Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-18T14:30:43.3229214Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-18T14:30:43.3230571Z ================================================== 2021-05-18T14:30:43.3231279Z downloaded 23 KB 2021-05-18T14:30:43.3231792Z 2021-05-18T14:30:43.3262595Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-18T14:30:43.6488275Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-18T14:30:43.6877583Z ================================================== 2021-05-18T14:30:43.6878465Z downloaded 373 KB 2021-05-18T14:30:43.6879005Z 2021-05-18T14:30:43.6912571Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-18T14:30:44.6920977Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-18T14:30:44.7106742Z ================================================== 2021-05-18T14:30:44.7107748Z downloaded 353 KB 2021-05-18T14:30:44.7108286Z 2021-05-18T14:30:44.7141304Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-18T14:30:44.9779992Z Content type 'application/x-tar' length 7843 bytes 2021-05-18T14:30:44.9781376Z ================================================== 2021-05-18T14:30:44.9782104Z downloaded 7843 bytes 2021-05-18T14:30:44.9782681Z 2021-05-18T14:30:44.9813055Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-18T14:30:45.1581330Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-18T14:30:45.1583197Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-18T14:30:45.1584172Z In addition: Warning message: 2021-05-18T14:30:45.1584844Z In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-18T14:30:45.1586468Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-18T14:30:45.1591411Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-18T14:30:45.1592506Z download of package ‘RNifti’ failed 2021-05-18T14:30:45.1604146Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-18T14:30:45.3262841Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-18T14:30:45.3263905Z ================================================== 2021-05-18T14:30:45.3264518Z downloaded 21 KB 2021-05-18T14:30:45.3265043Z 2021-05-18T14:30:45.3295711Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-18T14:30:45.5119007Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-18T14:30:45.5120093Z ================================================== 2021-05-18T14:30:45.5120592Z downloaded 10 KB 2021-05-18T14:30:45.5120892Z 2021-05-18T14:30:45.5145581Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-18T14:30:45.7952460Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-18T14:30:45.7955042Z ================================================== 2021-05-18T14:30:45.7955674Z downloaded 28 KB 2021-05-18T14:30:45.7956263Z 2021-05-18T14:30:45.7977447Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-18T14:30:46.1045343Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-18T14:30:46.1110187Z ================================================== 2021-05-18T14:30:46.1110744Z downloaded 70 KB 2021-05-18T14:30:46.1111051Z 2021-05-18T14:30:46.1142778Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/downloader_0.4.tar.gz' 2021-05-18T14:30:46.2902666Z Content type 'application/x-tar' length 6837 bytes 2021-05-18T14:30:46.2903468Z ================================================== 2021-05-18T14:30:46.2904022Z downloaded 6837 bytes 2021-05-18T14:30:46.2904559Z 2021-05-18T14:30:46.2938475Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-18T14:30:46.4552784Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-18T14:30:46.4906691Z ================================================== 2021-05-18T14:30:46.4907367Z downloaded 3.1 MB 2021-05-18T14:30:46.4907738Z 2021-05-18T14:30:46.4942598Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgfilecache_0.1.4.tar.gz' 2021-05-18T14:30:48.4608274Z Content type 'binary/octet-stream' length 25631 bytes (25 KB) 2021-05-18T14:30:48.4609060Z ================================================== 2021-05-18T14:30:48.4609541Z downloaded 25 KB 2021-05-18T14:30:48.4609845Z 2021-05-18T14:30:48.6767689Z * installing *source* package ‘R.methodsS3’ ... 2021-05-18T14:30:48.6781891Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:48.6811290Z ** using staged installation 2021-05-18T14:30:48.6925758Z ** R 2021-05-18T14:30:48.6986637Z ** inst 2021-05-18T14:30:48.6994122Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:49.1396936Z ** help 2021-05-18T14:30:49.1730289Z *** installing help indices 2021-05-18T14:30:49.2054352Z ** building package indices 2021-05-18T14:30:49.3988928Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:49.5657848Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:49.7370934Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:49.7379742Z * DONE (R.methodsS3) 2021-05-18T14:30:49.9281726Z * installing *source* package ‘base64enc’ ... 2021-05-18T14:30:49.9289502Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:49.9318404Z ** using staged installation 2021-05-18T14:30:49.9416888Z ** libs 2021-05-18T14:30:49.9461166Z 2021-05-18T14:30:49.9462502Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:30:50.0496303Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-18T14:30:50.1205168Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-18T14:30:50.1893281Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:30:50.2102284Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-18T14:30:50.2116923Z ** R 2021-05-18T14:30:50.2144315Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:50.4484178Z ** help 2021-05-18T14:30:50.4697089Z *** installing help indices 2021-05-18T14:30:50.4849917Z ** building package indices 2021-05-18T14:30:50.6619225Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:50.8270353Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:30:50.8438087Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:51.0050388Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:51.0056157Z * DONE (base64enc) 2021-05-18T14:30:51.2065020Z * installing *source* package ‘abind’ ... 2021-05-18T14:30:51.2077140Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:51.2106134Z ** using staged installation 2021-05-18T14:30:51.2207376Z ** R 2021-05-18T14:30:51.2253802Z ** inst 2021-05-18T14:30:51.2261386Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:51.7271800Z ** help 2021-05-18T14:30:51.7515714Z *** installing help indices 2021-05-18T14:30:51.7722015Z ** building package indices 2021-05-18T14:30:51.9565342Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:52.1218657Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:52.2919201Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:52.2928017Z * DONE (abind) 2021-05-18T14:30:52.4837594Z * installing *source* package ‘bitops’ ... 2021-05-18T14:30:52.4845456Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:52.4874683Z ** using staged installation 2021-05-18T14:30:52.4966121Z ** libs 2021-05-18T14:30:52.5011292Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-18T14:30:52.6742336Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-18T14:30:52.7293116Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:30:52.7718175Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:30:52.7866312Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-18T14:30:52.7881044Z ** R 2021-05-18T14:30:52.7904234Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:52.9958396Z ** help 2021-05-18T14:30:53.0192925Z *** installing help indices 2021-05-18T14:30:53.0360865Z ** building package indices 2021-05-18T14:30:53.2140588Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:53.3793398Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:30:53.3965129Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:53.5583526Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:53.5588219Z * DONE (bitops) 2021-05-18T14:30:53.7642418Z * installing *source* package ‘tinytex’ ... 2021-05-18T14:30:53.7654349Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:53.7683624Z ** using staged installation 2021-05-18T14:30:53.7871382Z ** R 2021-05-18T14:30:53.7938564Z ** inst 2021-05-18T14:30:53.7945760Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:54.4476789Z ** help 2021-05-18T14:30:54.4757932Z *** installing help indices 2021-05-18T14:30:54.5015309Z ** building package indices 2021-05-18T14:30:54.6953661Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:54.8684725Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:55.0506158Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:55.0515148Z * DONE (tinytex) 2021-05-18T14:30:55.2456698Z * installing *source* package ‘downloader’ ... 2021-05-18T14:30:55.2464877Z ** package ‘downloader’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:55.2466026Z ** using staged installation 2021-05-18T14:30:55.2567514Z ** R 2021-05-18T14:30:55.2594913Z ** inst 2021-05-18T14:30:55.2603493Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:55.4841356Z ** help 2021-05-18T14:30:55.5055680Z *** installing help indices 2021-05-18T14:30:55.5219955Z ** building package indices 2021-05-18T14:30:55.7023596Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:55.8682559Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:56.0333911Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:56.0339676Z * DONE (downloader) 2021-05-18T14:30:56.3701085Z * installing *source* package ‘R.oo’ ... 2021-05-18T14:30:56.3768401Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:56.3797826Z ** using staged installation 2021-05-18T14:30:56.3924620Z ** R 2021-05-18T14:30:56.4228730Z ** inst 2021-05-18T14:30:56.4241949Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:58.8216338Z ** help 2021-05-18T14:30:59.2513545Z *** installing help indices 2021-05-18T14:30:59.5429102Z ** building package indices 2021-05-18T14:30:59.9678899Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:00.1644293Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:00.4318045Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:00.4358178Z * DONE (R.oo) 2021-05-18T14:31:00.6714556Z * installing *source* package ‘htmltools’ ... 2021-05-18T14:31:00.6735376Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:00.6764157Z ** using staged installation 2021-05-18T14:31:00.6910584Z ** libs 2021-05-18T14:31:00.6952904Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:31:00.7382827Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-18T14:31:00.8381837Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:31:00.8597758Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-18T14:31:00.8602430Z ** R 2021-05-18T14:31:00.8722167Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:02.1524678Z ** help 2021-05-18T14:31:02.2278358Z *** installing help indices 2021-05-18T14:31:02.2802457Z ** building package indices 2021-05-18T14:31:02.5062594Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:02.6927910Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:31:02.7097955Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:02.9191259Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:02.9204927Z * DONE (htmltools) 2021-05-18T14:31:03.1304700Z * installing *source* package ‘pkgfilecache’ ... 2021-05-18T14:31:03.1321914Z ** package ‘pkgfilecache’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:03.1325103Z ** using staged installation 2021-05-18T14:31:03.1499451Z ** R 2021-05-18T14:31:03.1533929Z ** inst 2021-05-18T14:31:03.1544944Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:03.4436852Z ** help 2021-05-18T14:31:03.4712956Z *** installing help indices 2021-05-18T14:31:03.4983958Z ** building package indices 2021-05-18T14:31:03.6937274Z ** installing vignettes 2021-05-18T14:31:03.6938549Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:03.8585743Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:04.0230063Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:04.0236235Z * DONE (pkgfilecache) 2021-05-18T14:31:04.5123254Z * installing *source* package ‘R.utils’ ... 2021-05-18T14:31:04.5247420Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:04.5276652Z ** using staged installation 2021-05-18T14:31:04.5411064Z ** R 2021-05-18T14:31:04.6056549Z ** inst 2021-05-18T14:31:04.6067200Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:09.7620404Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-18T14:31:09.7621729Z ** help 2021-05-18T14:31:09.7622598Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-18T14:31:10.5387654Z *** installing help indices 2021-05-18T14:31:10.9601395Z ** building package indices 2021-05-18T14:31:11.6182590Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:11.8431830Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:12.8620911Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:12.8622737Z * DONE (R.utils) 2021-05-18T14:31:12.9469884Z * installing *source* package ‘rmarkdown’ ... 2021-05-18T14:31:12.9739710Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:12.9766354Z ** using staged installation 2021-05-18T14:31:13.0019536Z ** R 2021-05-18T14:31:13.0368455Z ** inst 2021-05-18T14:31:13.0576550Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:15.9116529Z ** help 2021-05-18T14:31:16.0908205Z *** installing help indices 2021-05-18T14:31:16.2219333Z *** copying figures 2021-05-18T14:31:16.2220579Z ** building package indices 2021-05-18T14:31:16.4916919Z ** installing vignettes 2021-05-18T14:31:16.4969083Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:16.7217531Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:17.0020781Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:17.0076897Z * DONE (rmarkdown) 2021-05-18T14:31:17.0263242Z 2021-05-18T14:31:17.0264168Z The downloaded source packages are in 2021-05-18T14:31:17.0265426Z ‘/tmp/RtmpoGM9yn/downloaded_packages’ 2021-05-18T14:31:17.1051037Z Skipping install of 'gifti' from a github remote, the SHA1 (e3ff5e0b) has not changed since last install. 2021-05-18T14:31:17.1052391Z Use `force = TRUE` to force installation 2021-05-18T14:31:17.1925103Z Skipping install of 'oro.nifti' from a github remote, the SHA1 (bd06b05d) has not changed since last install. 2021-05-18T14:31:17.1926495Z Use `force = TRUE` to force installation 2021-05-18T14:31:17.2694165Z Skipping install of 'cifti' from a github remote, the SHA1 (a7e91f2f) has not changed since last install. 2021-05-18T14:31:17.2695507Z Use `force = TRUE` to force installation 2021-05-18T14:31:30.1601754Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-18T14:31:30.1604034Z Use `force = TRUE` to force installation 2021-05-18T14:31:30.1614546Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-18T14:31:30.1615474Z Use `force = TRUE` to force installation 2021-05-18T14:31:30.1749348Z ##[group]Run options(width = 100) 2021-05-18T14:31:30.1749846Z options(width = 100) 2021-05-18T14:31:30.1750364Z pkgs <- installed.packages()[, "Package"] 2021-05-18T14:31:30.1751018Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-18T14:31:30.1758112Z shell: /usr/local/bin/Rscript {0} 2021-05-18T14:31:30.1758506Z env: 2021-05-18T14:31:30.1758921Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:31:30.1759358Z TIC_DEPLOY_KEY: 2021-05-18T14:31:30.1760114Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:31:30.1761737Z GITHUB_PAT: *** 2021-05-18T14:31:30.1762555Z COVERALLS_TOKEN: *** 2021-05-18T14:31:30.1763021Z continue-on-error: true 2021-05-18T14:31:30.1763468Z VDIFFR_RUN_TESTS: 2021-05-18T14:31:30.1763911Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:31:30.1764345Z TZ: UTC 2021-05-18T14:31:30.1764698Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:31:30.1765114Z NOT_CRAN: true 2021-05-18T14:31:30.1765474Z ##[endgroup] 2021-05-18T14:31:30.5903091Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-05-18T14:31:30.5903810Z setting value 2021-05-18T14:31:30.5904753Z version R Under development (unstable) (2021-05-16 r80304) 2021-05-18T14:31:30.5905470Z os Ubuntu 20.04.2 LTS 2021-05-18T14:31:30.5906259Z system x86_64, linux-gnu 2021-05-18T14:31:30.5906866Z ui X11 2021-05-18T14:31:30.5907449Z language (EN) 2021-05-18T14:31:30.5908230Z collate C.UTF-8 2021-05-18T14:31:30.5909027Z ctype C.UTF-8 2021-05-18T14:31:30.5909886Z tz UTC 2021-05-18T14:31:30.5911793Z date 2021-05-18 2021-05-18T14:31:30.5912118Z 2021-05-18T14:31:30.5927756Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-05-18T14:31:30.5928582Z package * version date lib source 2021-05-18T14:31:30.5929580Z abind 1.4-5 2016-07-21 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5930448Z aghast 0.2.1 2021-05-18 [1] Github (muschellij2/aghast@0c3b853) 2021-05-18T14:31:30.5931293Z askpass 1.1 2019-01-13 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5932063Z base * 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.5932851Z base64enc 0.1-3 2015-07-28 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5933662Z bitops 1.0-7 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5934434Z boot 1.3-28 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5935177Z brew 1.0-6 2011-04-13 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5935929Z brio 1.1.2 2021-04-23 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5936690Z cachem 1.0.5 2021-05-15 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5937439Z callr 3.7.0 2021-04-20 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5938291Z cifti 0.4.7 2021-05-18 [1] Github (neuroconductor/cifti@a7e91f2) 2021-05-18T14:31:30.5939148Z class 7.3-19 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5939890Z cli 2.5.0 2021-04-26 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5940647Z clipr 0.7.1 2020-10-08 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5941610Z cluster 2.1.2 2021-04-17 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5942403Z codetools 0.2-18 2020-11-04 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5943208Z commonmark 1.7 2018-12-01 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5943997Z compiler 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.5944747Z covr 3.5.1 2020-09-16 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5945499Z cpp11 0.2.7 2021-03-29 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5946258Z crayon 1.4.1 2021-02-08 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5947038Z credentials 1.3.0 2020-07-21 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5947821Z curl 4.3.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5948588Z datasets * 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.5949364Z debugme 1.1.0 2017-10-22 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5950207Z desc 1.2.0.9000 2021-05-18 [1] Github (muschellij2/desc@7be86f2) 2021-05-18T14:31:30.5951038Z devtools 2.4.1 2021-05-05 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5951812Z diffobj 0.3.4 2021-03-22 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5952581Z digest 0.6.27 2020-10-24 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5953378Z downloader 0.4 2015-07-09 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5954167Z dplyr 1.0.6 2021-05-05 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5957804Z ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5958636Z evaluate 0.14 2019-05-28 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5959416Z fansi 0.4.2 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5960188Z fastmap 1.1.0 2021-01-25 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5960956Z foreign 0.8-81 2020-12-22 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5961720Z fs 1.5.0 2020-07-31 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5962488Z generics 0.1.0 2020-10-31 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5963248Z gert 1.3.0 2021-03-29 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5964006Z gh 1.3.0 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5964863Z ghtravis 0.15.1 2021-05-18 [1] Github (muschellij2/ghtravis@0b26809) 2021-05-18T14:31:30.5965807Z gifti 0.7.6 2021-05-18 [1] Github (neuroconductor/gifti@e3ff5e0) 2021-05-18T14:31:30.5966660Z git2r 0.28.0 2021-01-10 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5967429Z gitcreds 0.1.1 2020-12-04 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5968227Z glue 1.4.2 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5968995Z graphics * 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.5969773Z grDevices * 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.5970542Z grid 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.5971297Z highr 0.9 2021-04-16 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5972067Z htmltools 0.5.1.1 2021-01-22 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5972945Z httr 1.4.2 2020-07-20 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5973713Z ini 0.3.1 2018-05-20 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5974465Z jsonlite 1.7.2 2020-12-09 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5975268Z KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5976051Z knitr 1.33 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5976802Z lattice 0.20-44 2021-05-02 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5977590Z lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5978525Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5979318Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5980116Z markdown 1.1 2019-08-07 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5980883Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5981631Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5982404Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5983167Z methods * 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.5983925Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5984676Z mime 0.10 2021-02-13 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5985413Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5986160Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.5987039Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5987921Z oro.nifti 0.10.3 2021-05-18 [1] Github (neuroconductor/oro.nifti@bd06b05) 2021-05-18T14:31:30.5988818Z parallel 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.5989605Z pillar 1.6.1 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5990373Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5991169Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5991989Z pkgfilecache 0.1.4 2021-05-17 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5992794Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5993566Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5994372Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5995164Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5996047Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5996816Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5997594Z R.methodsS3 1.8.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5998371Z R.oo 1.24.0 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5999114Z R.utils 2.10.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.5999859Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6000625Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6001499Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6002295Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6003072Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6003848Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6004610Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6005367Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6006128Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6006998Z RNifti 1.3.1 2021-05-18 [1] Github (neuroconductor/RNifti@929106d) 2021-05-18T14:31:30.6007862Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6008631Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.6009408Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6010209Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6010988Z rticles 0.19 2021-03-04 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6011768Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6012578Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6013398Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.6014178Z splines 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.6014928Z stats * 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.6015769Z stats4 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.6016540Z stringi 1.6.2 2021-05-17 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6017300Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6018085Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.2.0) 2021-05-18T14:31:30.6018851Z sys 3.4 2020-07-23 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6019652Z sysreqs 1.0.0.9000 2021-05-18 [1] Github (r-hub/sysreqs@f068afa) 2021-05-18T14:31:30.6020458Z tcltk 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.6021223Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6021988Z tibble 3.1.2 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6022802Z tic 0.10.0 2021-05-18 [1] Github (ropensci/tic@3b4dfb8) 2021-05-18T14:31:30.6023595Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6024368Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6025159Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6025921Z tools 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.6026669Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6027437Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6028188Z utils * 4.2.0 2021-05-17 [2] local 2021-05-18T14:31:30.6028928Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6029747Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6030515Z whisker 0.4 2019-08-28 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6031285Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6032037Z xfun 0.23 2021-05-15 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6032773Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6033531Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6034302Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6035037Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-18T14:31:30.6035332Z 2021-05-18T14:31:30.6035776Z [1] /home/runner/work/_temp/Library 2021-05-18T14:31:30.6036381Z [2] /opt/R/devel/lib/R/library 2021-05-18T14:31:30.6065179Z ##[group]Run Rscript -e 'tic::script()' 2021-05-18T14:31:30.6065750Z Rscript -e 'tic::script()' 2021-05-18T14:31:30.6066141Z ls -l check 2021-05-18T14:31:30.6106427Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-18T14:31:30.6106912Z env: 2021-05-18T14:31:30.6107326Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:31:30.6107753Z TIC_DEPLOY_KEY: 2021-05-18T14:31:30.6108507Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:31:30.6109993Z GITHUB_PAT: *** 2021-05-18T14:31:30.6110981Z COVERALLS_TOKEN: *** 2021-05-18T14:31:30.6111444Z continue-on-error: true 2021-05-18T14:31:30.6111889Z VDIFFR_RUN_TESTS: 2021-05-18T14:31:30.6112328Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:31:30.6112746Z TZ: UTC 2021-05-18T14:31:30.6113099Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:31:30.6113488Z NOT_CRAN: true 2021-05-18T14:31:30.6113946Z ##[endgroup] 2021-05-18T14:31:30.8521064Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:31:30.9687102Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-18T14:31:30.9688290Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-18T14:31:30.9689125Z timeout = Inf, check_dir = "check") 2021-05-18T14:31:31.0355098Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-18T14:31:31.2339253Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-18T14:31:31.2548125Z * preparing ‘freesurferformats’: 2021-05-18T14:31:31.2651569Z * checking DESCRIPTION meta-information ... OK 2021-05-18T14:31:31.4521820Z * installing the package to build vignettes 2021-05-18T14:31:39.6680567Z * creating vignettes ... OK 2021-05-18T14:31:39.7122058Z * checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:31:39.7139734Z * checking for empty or unneeded directories 2021-05-18T14:31:39.7189363Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:31:39.7253863Z * building ‘freesurferformats_0.1.13.tar.gz’ 2021-05-18T14:31:40.1568979Z 2021-05-18T14:31:40.4393211Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-18T14:31:40.6370211Z * using log directory ‘/home/runner/work/freesurferformats/freesurferformats/check/freesurferformats.Rcheck’ 2021-05-18T14:31:40.6371943Z * using R Under development (unstable) (2021-05-16 r80304) 2021-05-18T14:31:40.6372971Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-18T14:31:40.6373880Z * using session charset: UTF-8 2021-05-18T14:31:40.9260585Z * using option ‘--as-cran’ 2021-05-18T14:31:40.9281343Z * checking for file ‘freesurferformats/DESCRIPTION’ ... OK 2021-05-18T14:31:40.9282540Z * checking extension type ... Package 2021-05-18T14:31:40.9283764Z * this is package ‘freesurferformats’ version ‘0.1.13’ 2021-05-18T14:31:40.9292188Z * package encoding: UTF-8 2021-05-18T14:31:40.9325271Z * checking package namespace information ... OK 2021-05-18T14:31:54.8514778Z * checking package dependencies ... OK 2021-05-18T14:31:54.8532232Z * checking if this is a source package ... OK 2021-05-18T14:31:54.8540262Z * checking if there is a namespace ... OK 2021-05-18T14:31:55.9244769Z * checking for executable files ... OK 2021-05-18T14:31:55.9261487Z * checking for hidden files and directories ... OK 2021-05-18T14:31:55.9302290Z * checking for portable file names ... OK 2021-05-18T14:31:55.9313705Z * checking for sufficient/correct file permissions ... OK 2021-05-18T14:31:55.9343721Z * checking serialization versions ... OK 2021-05-18T14:32:00.8705500Z * checking whether package ‘freesurferformats’ can be installed ... OK 2021-05-18T14:32:00.9153987Z * checking installed package size ... OK 2021-05-18T14:32:00.9838909Z * checking package directory ... OK 2021-05-18T14:32:00.9839854Z * checking for future file timestamps ... OK 2021-05-18T14:32:00.9841430Z * checking ‘build’ directory ... OK 2021-05-18T14:32:01.1334281Z * checking DESCRIPTION meta-information ... OK 2021-05-18T14:32:01.1335214Z * checking top-level files ... OK 2021-05-18T14:32:01.1349411Z * checking for left-over files ... OK 2021-05-18T14:32:01.2970165Z * checking index information ... OK 2021-05-18T14:32:01.4630089Z * checking package subdirectories ... OK 2021-05-18T14:32:01.5125861Z * checking R files for non-ASCII characters ... OK 2021-05-18T14:32:01.5843761Z * checking R files for syntax errors ... OK 2021-05-18T14:32:01.7540054Z * checking whether the package can be loaded ... OK 2021-05-18T14:32:01.9001960Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-18T14:32:02.0482519Z * checking whether the package can be unloaded cleanly ... OK 2021-05-18T14:32:02.1994731Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-18T14:32:02.3666474Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-18T14:32:02.5463110Z * checking loading without being on the library search path ... OK 2021-05-18T14:32:03.3897098Z * checking dependencies in R code ... OK 2021-05-18T14:32:03.8905945Z * checking S3 generic/method consistency ... OK 2021-05-18T14:32:04.0659249Z * checking replacement functions ... OK 2021-05-18T14:32:04.6110603Z * checking foreign function calls ... OK 2021-05-18T14:32:15.0896400Z * checking R code for possible problems ... OK 2021-05-18T14:32:15.6437584Z * checking Rd files ... OK 2021-05-18T14:32:15.6900030Z * checking Rd metadata ... OK 2021-05-18T14:32:15.9824662Z * checking Rd line widths ... OK 2021-05-18T14:32:16.1760081Z * checking Rd cross-references ... OK 2021-05-18T14:32:16.3879730Z * checking for missing documentation entries ... OK 2021-05-18T14:32:17.2997469Z * checking for code/documentation mismatches ... OK 2021-05-18T14:32:18.4262883Z * checking Rd \usage sections ... OK 2021-05-18T14:32:18.6775239Z * checking Rd contents ... OK 2021-05-18T14:32:18.9397275Z * checking for unstated dependencies in examples ... OK 2021-05-18T14:32:18.9501077Z * checking installed files from ‘inst/doc’ ... OK 2021-05-18T14:32:18.9575914Z * checking files in ‘vignettes’ ... OK 2021-05-18T14:32:31.6847611Z * checking examples ... OK 2021-05-18T14:32:44.4070745Z * checking examples with --run-donttest ... OK 2021-05-18T14:32:44.6381753Z * checking for unstated dependencies in ‘tests’ ... OK 2021-05-18T14:32:44.7887565Z * checking tests ... 2021-05-18T14:34:03.1905175Z Running ‘testthat.R’ [45s/78s] 2021-05-18T14:34:03.1953103Z OK 2021-05-18T14:34:03.3797260Z * checking for unstated dependencies in vignettes ... OK 2021-05-18T14:34:03.4428837Z * checking package vignettes in ‘inst/doc’ ... OK 2021-05-18T14:34:07.7787258Z * checking re-building of vignette outputs ... OK 2021-05-18T14:34:12.3344680Z * checking PDF version of manual ... OK 2021-05-18T14:34:12.3346269Z * checking for non-standard things in the check directory ... OK 2021-05-18T14:34:12.3347175Z * checking for detritus in the temp directory ... OK 2021-05-18T14:34:12.3347819Z * DONE 2021-05-18T14:34:12.3355265Z 2021-05-18T14:34:12.3355868Z Status: OK 2021-05-18T14:34:12.3358344Z 2021-05-18T14:34:12.4160452Z ── R CMD check results ─────────────────────────── freesurferformats 0.1.13 ──── 2021-05-18T14:34:12.4178434Z Duration: 2m 32.2s 2021-05-18T14:34:12.4179933Z 2021-05-18T14:34:12.4192031Z 0 errors ✔ | 0 warnings ✔ | 0 notes ✔ 2021-05-18T14:34:12.4284524Z total 7304 2021-05-18T14:34:12.4286119Z drwxr-xr-x 6 runner docker 4096 May 18 14:34 freesurferformats.Rcheck 2021-05-18T14:34:12.4287293Z -rw-r--r-- 1 runner docker 3519575 May 18 14:31 freesurferformats_0.1.13.tar.gz 2021-05-18T14:34:12.4289336Z -rw-r--r-- 1 runner docker 3952087 May 18 14:32 freesurferformats_0.1.13_R_x86_64-pc-linux-gnu.tar.gz 2021-05-18T14:34:12.4325302Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-18T14:34:12.4326025Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-18T14:34:12.4372507Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-18T14:34:12.4373109Z env: 2021-05-18T14:34:12.4373513Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:34:12.4373960Z TIC_DEPLOY_KEY: 2021-05-18T14:34:12.4374697Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:34:12.4376351Z GITHUB_PAT: *** 2021-05-18T14:34:12.4377134Z COVERALLS_TOKEN: *** 2021-05-18T14:34:12.4377597Z continue-on-error: true 2021-05-18T14:34:12.4378032Z VDIFFR_RUN_TESTS: 2021-05-18T14:34:12.4378489Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:34:12.4378900Z TZ: UTC 2021-05-18T14:34:12.4379265Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:34:12.4379657Z NOT_CRAN: true 2021-05-18T14:34:12.4379997Z ##[endgroup] 2021-05-18T14:34:12.4488314Z 2021-05-18T14:34:12.4489635Z R Under development (unstable) (2021-05-16 r80304) -- "Unsuffered Consequences" 2021-05-18T14:34:12.4490607Z Copyright (C) 2021 The R Foundation for Statistical Computing 2021-05-18T14:34:12.4491553Z Platform: x86_64-pc-linux-gnu (64-bit) 2021-05-18T14:34:12.4491940Z 2021-05-18T14:34:12.4492578Z R is free software and comes with ABSOLUTELY NO WARRANTY. 2021-05-18T14:34:12.4493467Z You are welcome to redistribute it under certain conditions. 2021-05-18T14:34:12.4494522Z Type 'license()' or 'licence()' for distribution details. 2021-05-18T14:34:12.4494968Z 2021-05-18T14:34:12.4495590Z R is a collaborative project with many contributors. 2021-05-18T14:34:12.4496552Z Type 'contributors()' for more information and 2021-05-18T14:34:12.4497544Z 'citation()' on how to cite R or R packages in publications. 2021-05-18T14:34:12.4497982Z 2021-05-18T14:34:12.4498762Z Type 'demo()' for some demos, 'help()' for on-line help, or 2021-05-18T14:34:12.4499729Z 'help.start()' for an HTML browser interface to help. 2021-05-18T14:34:12.4500451Z Type 'q()' to quit R. 2021-05-18T14:34:12.4500738Z 2021-05-18T14:34:12.4501164Z > library(testthat) 2021-05-18T14:34:12.4501743Z > library(freesurferformats) 2021-05-18T14:34:12.4502231Z > 2021-05-18T14:34:12.4502759Z > test_check("freesurferformats") 2021-05-18T14:34:12.4504766Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/label/lh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot' 2021-05-18T14:34:12.4506784Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot' 2021-05-18T14:34:12.4507972Z Content type 'unknown' length 1197156 bytes (1.1 MB) 2021-05-18T14:34:12.4508566Z ================================================== 2021-05-18T14:34:12.4509029Z downloaded 1.1 MB 2021-05-18T14:34:12.4509371Z 2021-05-18T14:34:12.4511061Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/label/lh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot' 2021-05-18T14:34:12.4512930Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot' 2021-05-18T14:34:12.4514076Z Content type 'unknown' length 1195465 bytes (1.1 MB) 2021-05-18T14:34:12.4514676Z ================================================== 2021-05-18T14:34:12.4515184Z downloaded 1.1 MB 2021-05-18T14:34:12.4515443Z 2021-05-18T14:34:12.4517113Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/label/lh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label' 2021-05-18T14:34:12.4518775Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label' 2021-05-18T14:34:12.4521715Z Content type 'unknown' length 6293309 bytes (6.0 MB) 2021-05-18T14:34:12.4523021Z ================================================== 2021-05-18T14:34:12.4523440Z downloaded 6.0 MB 2021-05-18T14:34:12.4523851Z 2021-05-18T14:34:12.4525491Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/label/rh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot' 2021-05-18T14:34:12.4527260Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot' 2021-05-18T14:34:12.4528394Z Content type 'unknown' length 1229868 bytes (1.2 MB) 2021-05-18T14:34:12.4528908Z ================================================== 2021-05-18T14:34:12.4529317Z downloaded 1.2 MB 2021-05-18T14:34:12.4529579Z 2021-05-18T14:34:12.4531040Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/label/rh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot' 2021-05-18T14:34:12.4532639Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot' 2021-05-18T14:34:12.4533722Z Content type 'unknown' length 1228177 bytes (1.2 MB) 2021-05-18T14:34:12.4534267Z ================================================== 2021-05-18T14:34:12.4534676Z downloaded 1.2 MB 2021-05-18T14:34:12.4534937Z 2021-05-18T14:34:12.4536410Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/label/rh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label' 2021-05-18T14:34:12.4538053Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label' 2021-05-18T14:34:12.4539043Z Content type 'unknown' length 6336335 bytes (6.0 MB) 2021-05-18T14:34:12.4539572Z ================================================== 2021-05-18T14:34:12.4539974Z downloaded 6.0 MB 2021-05-18T14:34:12.4540230Z 2021-05-18T14:34:12.4541566Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/mri/brain.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz' 2021-05-18T14:34:12.4543041Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz' 2021-05-18T14:34:12.4543990Z Content type 'unknown' length 1441225 bytes (1.4 MB) 2021-05-18T14:34:12.4544503Z ================================================== 2021-05-18T14:34:12.4544904Z downloaded 1.4 MB 2021-05-18T14:34:12.4545161Z 2021-05-18T14:34:12.4546552Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/lh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness' 2021-05-18T14:34:12.4548101Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness' 2021-05-18T14:34:12.4549073Z Content type 'unknown' length 596991 bytes (582 KB) 2021-05-18T14:34:12.4549590Z ================================================== 2021-05-18T14:34:12.4549991Z downloaded 582 KB 2021-05-18T14:34:12.4550247Z 2021-05-18T14:34:12.4551574Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/lh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white' 2021-05-18T14:34:12.4553054Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white' 2021-05-18T14:34:12.4554003Z Content type 'unknown' length 5374135 bytes (5.1 MB) 2021-05-18T14:34:12.4554517Z ================================================== 2021-05-18T14:34:12.4554916Z downloaded 5.1 MB 2021-05-18T14:34:12.4555177Z 2021-05-18T14:34:12.4556723Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/rh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness' 2021-05-18T14:34:12.4558288Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness' 2021-05-18T14:34:12.4559263Z Content type 'unknown' length 613347 bytes (598 KB) 2021-05-18T14:34:12.4559780Z ================================================== 2021-05-18T14:34:12.4560187Z downloaded 598 KB 2021-05-18T14:34:12.4560448Z 2021-05-18T14:34:12.4561878Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/rh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white' 2021-05-18T14:34:12.4563366Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white' 2021-05-18T14:34:12.4564319Z Content type 'unknown' length 5521339 bytes (5.3 MB) 2021-05-18T14:34:12.4564902Z ================================================== 2021-05-18T14:34:12.4565304Z downloaded 5.3 MB 2021-05-18T14:34:12.4565561Z 2021-05-18T14:34:12.4567486Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh' 2021-05-18T14:34:12.4569715Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh' 2021-05-18T14:34:12.4570901Z Content type 'unknown' length 668600 bytes (652 KB) 2021-05-18T14:34:12.4571414Z ================================================== 2021-05-18T14:34:12.4571813Z downloaded 652 KB 2021-05-18T14:34:12.4572076Z 2021-05-18T14:34:12.4573996Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh' 2021-05-18T14:34:12.4576207Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh' 2021-05-18T14:34:12.4577391Z Content type 'unknown' length 668600 bytes (652 KB) 2021-05-18T14:34:12.4577913Z ================================================== 2021-05-18T14:34:12.4578299Z downloaded 652 KB 2021-05-18T14:34:12.4578557Z 2021-05-18T14:34:12.4579896Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/lh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area' 2021-05-18T14:34:12.4581331Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area' 2021-05-18T14:34:12.4582269Z Content type 'unknown' length 596991 bytes (582 KB) 2021-05-18T14:34:12.4582798Z ================================================== 2021-05-18T14:34:12.4583186Z downloaded 582 KB 2021-05-18T14:34:12.4583443Z 2021-05-18T14:34:12.4584774Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/rh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area' 2021-05-18T14:34:12.4586211Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area' 2021-05-18T14:34:12.4587145Z Content type 'unknown' length 613347 bytes (598 KB) 2021-05-18T14:34:12.4587668Z ================================================== 2021-05-18T14:34:12.4588055Z downloaded 598 KB 2021-05-18T14:34:12.4588310Z 2021-05-18T14:34:12.4590059Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh' 2021-05-18T14:34:12.4592048Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh' 2021-05-18T14:34:12.4593153Z Content type 'unknown' length 668600 bytes (652 KB) 2021-05-18T14:34:12.4593679Z ================================================== 2021-05-18T14:34:12.4594068Z downloaded 652 KB 2021-05-18T14:34:12.4594327Z 2021-05-18T14:34:12.4596242Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh' 2021-05-18T14:34:12.4598256Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh' 2021-05-18T14:34:12.4599352Z Content type 'unknown' length 668600 bytes (652 KB) 2021-05-18T14:34:12.4599880Z ================================================== 2021-05-18T14:34:12.4600271Z downloaded 652 KB 2021-05-18T14:34:12.4600531Z 2021-05-18T14:34:12.4602192Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/label/lh.aparc.a2005s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2005s.annot' 2021-05-18T14:34:12.4603959Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2005s.annot' 2021-05-18T14:34:12.4604980Z Content type 'unknown' length 1197518 bytes (1.1 MB) 2021-05-18T14:34:12.4605582Z ================================================== 2021-05-18T14:34:12.4605984Z downloaded 1.1 MB 2021-05-18T14:34:12.4606229Z 2021-05-18T14:34:12.4607815Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/label/rh.aparc.a2005s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2005s.annot' 2021-05-18T14:34:12.4609589Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2005s.annot' 2021-05-18T14:34:12.4610611Z Content type 'unknown' length 1230230 bytes (1.2 MB) 2021-05-18T14:34:12.4611142Z ================================================== 2021-05-18T14:34:12.4611543Z downloaded 1.2 MB 2021-05-18T14:34:12.4611793Z 2021-05-18T14:34:12.4613317Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/ext/lh.cortex.patch.3d' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/ext/lh.cortex.patch.3d' 2021-05-18T14:34:12.4615015Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/ext/lh.cortex.patch.3d' 2021-05-18T14:34:12.4616020Z Content type 'unknown' length 2388760 bytes (2.3 MB) 2021-05-18T14:34:12.4616548Z ================================================== 2021-05-18T14:34:12.4616948Z downloaded 2.3 MB 2021-05-18T14:34:12.4617194Z 2021-05-18T14:34:12.4618795Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/ext/lh.cortex.patch.3d.asc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/ext/lh.cortex.patch.3d.asc' 2021-05-18T14:34:12.4620602Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/ext/lh.cortex.patch.3d.asc' 2021-05-18T14:34:12.4621662Z Content type 'text/plain' length 15337998 bytes (14.6 MB) 2021-05-18T14:34:12.4622198Z ================================================== 2021-05-18T14:34:12.4622599Z downloaded 14.6 MB 2021-05-18T14:34:12.4622854Z 2021-05-18T14:34:12.4624376Z Download file to '~/.local/share/freesurferformats/subjects_dir/subject1/surf/lh.thickness.nii.gz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.nii.gz' 2021-05-18T14:34:12.4626105Z trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.nii.gz' 2021-05-18T14:34:12.4627117Z Content type 'unknown' length 501835 bytes (490 KB) 2021-05-18T14:34:12.4627629Z ================================================== 2021-05-18T14:34:12.4628028Z downloaded 490 KB 2021-05-18T14:34:12.4628281Z 2021-05-18T14:34:12.4629801Z Download file to '~/.local/share/freesurferformats/cifti/Conte69.L.inflated.32k_fs_LR.surf.gii' from 'http://rcmd.org/projects/nitestdata/cifti/Conte69.L.inflated.32k_fs_LR.surf.gii' 2021-05-18T14:34:12.4631498Z trying URL 'http://rcmd.org/projects/nitestdata/cifti/Conte69.L.inflated.32k_fs_LR.surf.gii' 2021-05-18T14:34:12.4632510Z Content type 'unknown' length 726328 bytes (709 KB) 2021-05-18T14:34:12.4633021Z ================================================== 2021-05-18T14:34:12.4633422Z downloaded 709 KB 2021-05-18T14:34:12.4633681Z 2021-05-18T14:34:12.4635170Z Download file to '~/.local/share/freesurferformats/cifti/Conte69.R.inflated.32k_fs_LR.surf.gii' from 'http://rcmd.org/projects/nitestdata/cifti/Conte69.R.inflated.32k_fs_LR.surf.gii' 2021-05-18T14:34:12.4637005Z trying URL 'http://rcmd.org/projects/nitestdata/cifti/Conte69.R.inflated.32k_fs_LR.surf.gii' 2021-05-18T14:34:12.4638024Z Content type 'unknown' length 714713 bytes (697 KB) 2021-05-18T14:34:12.4638536Z ================================================== 2021-05-18T14:34:12.4638939Z downloaded 697 KB 2021-05-18T14:34:12.4639197Z 2021-05-18T14:34:12.4641210Z Download file to '~/.local/share/freesurferformats/cifti/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii' from 'http://rcmd.org/projects/nitestdata/cifti/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii' 2021-05-18T14:34:12.4643511Z trying URL 'http://rcmd.org/projects/nitestdata/cifti/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii' 2021-05-18T14:34:12.4644717Z Content type 'unknown' length 840936 bytes (821 KB) 2021-05-18T14:34:12.4645298Z ================================================== 2021-05-18T14:34:12.4645699Z downloaded 821 KB 2021-05-18T14:34:12.4645955Z 2021-05-18T14:34:12.4647268Z Download file to '~/.local/share/freesurferformats/nifti2/avg152T1_LR_nifti2.nii.gz' from 'http://rcmd.org/projects/nitestdata/nifti2/avg152T1_LR_nifti2.nii.gz' 2021-05-18T14:34:12.4648702Z trying URL 'http://rcmd.org/projects/nitestdata/nifti2/avg152T1_LR_nifti2.nii.gz' 2021-05-18T14:34:12.4649636Z Content type 'unknown' length 763810 bytes (745 KB) 2021-05-18T14:34:12.4650148Z ================================================== 2021-05-18T14:34:12.4650552Z downloaded 745 KB 2021-05-18T14:34:12.4650811Z 2021-05-18T14:34:12.4651321Z [1] "Label table cdata (region names for the rows below):" 2021-05-18T14:34:12.4651932Z [1] "unknown" "bankssts" 2021-05-18T14:34:12.4652679Z [3] "caudalanteriorcingulate" "caudalmiddlefrontal" 2021-05-18T14:34:12.4653441Z [5] "corpuscallosum" "cuneus" 2021-05-18T14:34:12.4654042Z [7] "entorhinal" "fusiform" 2021-05-18T14:34:12.4654714Z [9] "inferiorparietal" "inferiortemporal" 2021-05-18T14:34:12.4655467Z [11] "isthmuscingulate" "lateraloccipital" 2021-05-18T14:34:12.4656210Z [13] "lateralorbitofrontal" "lingual" 2021-05-18T14:34:12.4656966Z [15] "medialorbitofrontal" "middletemporal" 2021-05-18T14:34:12.4657691Z [17] "parahippocampal" "paracentral" 2021-05-18T14:34:12.4658391Z [19] "parsopercularis" "parsorbitalis" 2021-05-18T14:34:12.4659098Z [21] "parstriangularis" "pericalcarine" 2021-05-18T14:34:12.4659831Z [23] "postcentral" "posteriorcingulate" 2021-05-18T14:34:12.4660501Z [25] "precentral" "precuneus" 2021-05-18T14:34:12.4661279Z [27] "rostralanteriorcingulate" "rostralmiddlefrontal" 2021-05-18T14:34:12.4662147Z [29] "superiorfrontal" "superiorparietal" 2021-05-18T14:34:12.4662887Z [31] "superiortemporal" "supramarginal" 2021-05-18T14:34:12.4663553Z [33] "frontalpole" "temporalpole" 2021-05-18T14:34:12.4664215Z [35] "transversetemporal" "insula" 2021-05-18T14:34:12.4664802Z [1] "Label table attribute columns:" 2021-05-18T14:34:12.4665415Z Red Green Blue Alpha Key Index 2021-05-18T14:34:12.4665974Z unknown 25 5 25 0 1639705 1639705 2021-05-18T14:34:12.4666474Z bankssts 25 100 40 0 2647065 2647065 2021-05-18T14:34:12.4667115Z caudalanteriorcingulate 125 100 160 0 10511485 10511485 2021-05-18T14:34:12.4667835Z caudalmiddlefrontal 100 25 0 0 6500 6500 2021-05-18T14:34:12.4668459Z corpuscallosum 120 70 50 0 3294840 3294840 2021-05-18T14:34:12.4669002Z cuneus 220 20 100 0 6558940 6558940 2021-05-18T14:34:12.4669543Z entorhinal 220 20 10 0 660700 660700 2021-05-18T14:34:12.4670057Z fusiform 180 220 140 0 9231540 9231540 2021-05-18T14:34:12.4670631Z inferiorparietal 220 60 220 0 14433500 14433500 2021-05-18T14:34:12.4671254Z inferiortemporal 180 40 120 0 7874740 7874740 2021-05-18T14:34:12.4671864Z isthmuscingulate 140 20 140 0 9180300 9180300 2021-05-18T14:34:12.4672483Z lateraloccipital 20 30 140 0 9182740 9182740 2021-05-18T14:34:12.4673142Z lateralorbitofrontal 35 75 50 0 3296035 3296035 2021-05-18T14:34:12.4673787Z lingual 225 140 140 0 9211105 9211105 2021-05-18T14:34:12.4674380Z medialorbitofrontal 200 35 75 0 4924360 4924360 2021-05-18T14:34:12.4675016Z middletemporal 160 100 50 0 3302560 3302560 2021-05-18T14:34:12.4675606Z parahippocampal 20 220 60 0 3988500 3988500 2021-05-18T14:34:12.4676393Z paracentral 60 220 60 0 3988540 3988540 2021-05-18T14:34:12.4676968Z parsopercularis 220 180 140 0 9221340 9221340 2021-05-18T14:34:12.4677555Z parsorbitalis 20 100 50 0 3302420 3302420 2021-05-18T14:34:12.4678146Z parstriangularis 220 60 20 0 1326300 1326300 2021-05-18T14:34:12.4678736Z pericalcarine 120 100 60 0 3957880 3957880 2021-05-18T14:34:12.4679297Z postcentral 220 20 20 0 1316060 1316060 2021-05-18T14:34:12.4679901Z posteriorcingulate 220 180 220 0 14464220 14464220 2021-05-18T14:34:12.4680498Z precentral 60 20 220 0 14423100 14423100 2021-05-18T14:34:12.4681041Z precuneus 160 140 180 0 11832480 11832480 2021-05-18T14:34:12.4681694Z rostralanteriorcingulate 80 20 140 0 9180240 9180240 2021-05-18T14:34:12.4682413Z rostralmiddlefrontal 75 50 125 0 8204875 8204875 2021-05-18T14:34:12.4683200Z superiorfrontal 20 220 160 0 10542100 10542100 2021-05-18T14:34:12.4683807Z superiorparietal 20 180 140 0 9221140 9221140 2021-05-18T14:34:12.4684439Z superiortemporal 140 220 220 0 14474380 14474380 2021-05-18T14:34:12.4685038Z supramarginal 80 160 20 0 1351760 1351760 2021-05-18T14:34:12.4685593Z frontalpole 100 0 100 0 6553700 6553700 2021-05-18T14:34:12.4686153Z temporalpole 70 20 170 0 11146310 11146310 2021-05-18T14:34:12.4686768Z transversetemporal 150 150 200 0 13145750 13145750 2021-05-18T14:34:12.4687339Z insula 255 192 32 0 2146559 2146559 2021-05-18T14:34:12.4688242Z ══ Skipped tests ═══════════════════════════════════════════════════════════════ 2021-05-18T14:34:12.4689063Z • Freesurfer installation with GCA file available. (1) 2021-05-18T14:34:12.4689746Z • Test data missing. (2) 2021-05-18T14:34:12.4690031Z 2021-05-18T14:34:12.4690450Z [ FAIL 0 | WARN 0 | SKIP 3 | PASS 796 ] 2021-05-18T14:34:12.4690806Z > 2021-05-18T14:34:12.4691153Z > proc.time() 2021-05-18T14:34:12.4691580Z user system elapsed 2021-05-18T14:34:12.4691989Z 42.144 2.435 78.339 2021-05-18T14:34:12.4739386Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-05-18T14:34:12.4739923Z Rscript -e "tic::before_deploy()" 2021-05-18T14:34:12.4777082Z shell: /usr/bin/bash -e {0} 2021-05-18T14:34:12.4777438Z env: 2021-05-18T14:34:12.4777850Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:34:12.4778276Z TIC_DEPLOY_KEY: 2021-05-18T14:34:12.4779013Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:34:12.4780226Z GITHUB_PAT: *** 2021-05-18T14:34:12.4780956Z COVERALLS_TOKEN: *** 2021-05-18T14:34:12.4781417Z continue-on-error: true 2021-05-18T14:34:12.4781860Z VDIFFR_RUN_TESTS: 2021-05-18T14:34:12.4782309Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:34:12.4782734Z TZ: UTC 2021-05-18T14:34:12.4783083Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:34:12.4783470Z NOT_CRAN: true 2021-05-18T14:34:12.4783826Z ##[endgroup] 2021-05-18T14:34:12.7184034Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:34:12.8303889Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-05-18T14:34:12.8304422Z with: 2021-05-18T14:34:12.8305274Z upload_url: https://uploads.github.com/repos/neuroconductor/freesurferformats/releases/43144280/assets{?name,label} 2021-05-18T14:34:12.8306362Z asset_path: check/freesurferformats_0.1.13_R_x86_64-pc-linux-gnu.tar.gz 2021-05-18T14:34:12.8307204Z asset_name: freesurferformats_0.1.13_R_x86_64-pc-linux-gnu_R4.1.tar.gz 2021-05-18T14:34:12.8307885Z asset_content_type: application/octet-stream 2021-05-18T14:34:12.8308352Z env: 2021-05-18T14:34:12.8308761Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:34:12.8309186Z TIC_DEPLOY_KEY: 2021-05-18T14:34:12.8309928Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:34:12.8311546Z GITHUB_PAT: *** 2021-05-18T14:34:12.8312351Z COVERALLS_TOKEN: *** 2021-05-18T14:34:12.8312809Z continue-on-error: true 2021-05-18T14:34:12.8313252Z VDIFFR_RUN_TESTS: 2021-05-18T14:34:12.8313727Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:34:12.8314133Z TZ: UTC 2021-05-18T14:34:12.8314499Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:34:12.8314871Z NOT_CRAN: true 2021-05-18T14:34:12.8315731Z GITHUB_TOKEN: *** 2021-05-18T14:34:12.8316253Z ##[endgroup] 2021-05-18T14:34:13.4979068Z ##[group]Run Rscript -e "tic::deploy()" 2021-05-18T14:34:13.4979660Z Rscript -e "tic::deploy()" 2021-05-18T14:34:13.5021621Z shell: /usr/bin/bash -e {0} 2021-05-18T14:34:13.5021983Z env: 2021-05-18T14:34:13.5022403Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:34:13.5022835Z TIC_DEPLOY_KEY: 2021-05-18T14:34:13.5023601Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:34:13.5025222Z GITHUB_PAT: *** 2021-05-18T14:34:13.5026011Z COVERALLS_TOKEN: *** 2021-05-18T14:34:13.5026476Z continue-on-error: true 2021-05-18T14:34:13.5026927Z VDIFFR_RUN_TESTS: 2021-05-18T14:34:13.5027370Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:34:13.5027792Z TZ: UTC 2021-05-18T14:34:13.5028147Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:34:13.5028538Z NOT_CRAN: true 2021-05-18T14:34:13.5028898Z ##[endgroup] 2021-05-18T14:34:13.7463904Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:34:13.8570637Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-05-18T14:34:13.8571190Z Rscript -e "tic::after_deploy()" 2021-05-18T14:34:13.8612181Z shell: /usr/bin/bash -e {0} 2021-05-18T14:34:13.8612553Z env: 2021-05-18T14:34:13.8612961Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:34:13.8613405Z TIC_DEPLOY_KEY: 2021-05-18T14:34:13.8614158Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:34:13.8615553Z GITHUB_PAT: *** 2021-05-18T14:34:13.8616320Z COVERALLS_TOKEN: *** 2021-05-18T14:34:13.8616784Z continue-on-error: true 2021-05-18T14:34:13.8617217Z VDIFFR_RUN_TESTS: 2021-05-18T14:34:13.8617669Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:34:13.8618077Z TZ: UTC 2021-05-18T14:34:13.8618436Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:34:13.8618823Z NOT_CRAN: true 2021-05-18T14:34:13.8619163Z ##[endgroup] 2021-05-18T14:34:14.1142323Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:34:14.3702804Z Post job cleanup. 2021-05-18T14:34:14.4103417Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-18T14:34:14.4182778Z Post job cleanup. 2021-05-18T14:34:14.5115020Z [command]/usr/bin/git version 2021-05-18T14:34:14.5175892Z git version 2.31.1 2021-05-18T14:34:14.5210320Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-18T14:34:14.5257384Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-18T14:34:14.5507515Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-18T14:34:14.5545996Z http.https://github.com/.extraheader 2021-05-18T14:34:14.5554459Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-18T14:34:14.5602511Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-18T14:34:14.5875023Z Cleaning up orphan processes